Wall clock time and date at job start Tue Mar 31 2020 19:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.46693 * 2 1 4 4 C 1.53000 * 109.46889 * 240.00335 * 2 1 3 5 5 N 1.46510 * 109.46751 * 184.99802 * 4 2 1 6 6 C 1.46494 * 119.99647 * 269.99753 * 5 4 2 7 7 C 1.36935 * 119.99928 * 89.99634 * 5 4 2 8 8 H 1.08003 * 120.00291 * 20.30506 * 7 5 4 9 9 C 1.38806 * 119.99968 * 200.30045 * 7 5 4 10 10 N 1.31619 * 120.00170 * 15.02019 * 9 7 5 11 11 Si 1.86797 * 120.00227 * 195.01693 * 9 7 5 12 12 H 1.48504 * 109.47268 * 85.00418 * 11 9 7 13 13 H 1.48502 * 109.47429 * 205.00395 * 11 9 7 14 14 H 1.48508 * 109.47373 * 325.00513 * 11 9 7 15 15 N 1.46501 * 109.47245 * 119.99604 * 2 1 3 16 16 C 1.34773 * 120.00514 * 275.00068 * 15 2 1 17 17 O 1.21599 * 119.99496 * 0.02562 * 16 15 2 18 18 C 1.47518 * 120.00054 * 179.97438 * 16 15 2 19 19 C 1.36601 * 125.76636 * 180.02562 * 18 16 15 20 20 N 1.34819 * 106.83644 * 179.97438 * 19 18 16 21 21 C 1.46494 * 126.59392 * 180.02562 * 20 19 18 22 22 C 1.52998 * 109.47197 * 124.99456 * 21 20 19 23 23 H 1.08999 * 110.45801 * 52.40025 * 22 21 20 24 24 C 1.54513 * 110.51208 * 174.99727 * 22 21 20 25 25 C 1.54479 * 104.05973 * 118.64775 * 24 22 21 26 26 O 1.44423 * 104.80585 * 23.98227 * 25 24 22 27 27 C 1.44430 * 105.27315 * 319.48673 * 26 25 24 28 28 N 1.40213 * 106.81282 * 359.97438 * 20 19 18 29 29 N 1.28762 * 108.36232 * 359.74926 * 28 20 19 30 30 H 1.08993 * 109.47054 * 60.00046 * 1 2 3 31 31 H 1.09000 * 109.46654 * 299.99700 * 1 2 3 32 32 H 1.09004 * 109.46693 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47138 * 304.99185 * 4 2 1 34 34 H 1.08998 * 109.47494 * 65.00121 * 4 2 1 35 35 H 1.08997 * 109.47235 * 95.10469 * 6 5 4 36 36 H 1.09002 * 109.46958 * 215.10708 * 6 5 4 37 37 H 1.08993 * 109.47341 * 335.10313 * 6 5 4 38 38 H 0.97000 * 120.00336 * 179.97438 * 10 9 7 39 39 H 0.97007 * 119.99379 * 94.99985 * 15 2 1 40 40 H 1.07999 * 126.58324 * 0.02562 * 19 18 16 41 41 H 1.08997 * 109.47435 * 244.99716 * 21 20 19 42 42 H 1.09002 * 109.47165 * 4.99411 * 21 20 19 43 43 H 1.08999 * 110.51116 * 237.29179 * 24 22 21 44 44 H 1.08996 * 110.50999 * 0.02562 * 24 22 21 45 45 H 1.09004 * 110.37360 * 142.81305 * 25 24 22 46 46 H 1.09001 * 110.36980 * 265.14643 * 25 24 22 47 47 H 1.09009 * 110.37036 * 281.68121 * 27 26 25 48 48 H 1.08995 * 110.37037 * 159.34624 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5001 -0.8263 -1.1906 6 6 4.3343 0.2342 -1.7613 7 6 4.0851 -1.9157 -0.6023 8 1 3.5230 -2.8297 -0.4790 9 6 5.4004 -1.8454 -0.1646 10 7 5.9904 -0.6757 -0.0382 11 14 6.3334 -3.4110 0.2453 12 1 6.9260 -3.9732 -0.9949 13 1 7.4149 -3.1033 1.2152 14 1 5.4009 -4.4013 0.8413 15 7 2.0184 -0.6905 1.1962 16 6 2.1472 -0.0182 2.3572 17 8 1.8575 1.1615 2.4118 18 6 2.6384 -0.7138 3.5618 19 6 2.8130 -0.1501 4.7938 20 7 3.2731 -1.1225 5.6064 21 6 3.6063 -0.9888 7.0267 22 6 2.8241 -2.0268 7.8339 23 1 2.9722 -3.0234 7.4181 24 6 3.2501 -1.9911 9.3187 25 6 1.9548 -1.6149 10.0718 26 8 0.8846 -2.0277 9.1943 27 6 1.3219 -1.6680 7.8656 28 7 3.3704 -2.2867 4.8310 29 7 2.9834 -2.0107 3.6344 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6055 -1.7198 -1.2952 34 1 1.7517 -0.1582 -2.1370 35 1 4.6151 0.9372 -0.9772 36 1 5.2330 -0.2043 -2.1951 37 1 3.7755 0.7586 -2.5363 38 1 6.9094 -0.6265 0.2681 39 1 2.2491 -1.6318 1.1526 40 1 2.6188 0.8770 5.0650 41 1 4.6751 -1.1504 7.1660 42 1 3.3425 0.0119 7.3691 43 1 3.6064 -2.9706 9.6375 44 1 4.0176 -1.2337 9.4777 45 1 1.8971 -2.1514 11.0190 46 1 1.9132 -0.5389 10.2411 47 1 1.1831 -0.6001 7.6966 48 1 0.7780 -2.2452 7.1180 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275689433.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:31 Heat of formation + Delta-G solvation = 14.415735 kcal Electronic energy + Delta-G solvation = -30074.000598 eV Core-core repulsion = 25973.153249 eV Total energy + Delta-G solvation = -4100.847348 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.19778 -40.58006 -40.30078 -37.97569 -36.30683 -35.68175 -33.42399 -33.11293 -32.19400 -31.16410 -30.26340 -28.00926 -27.54011 -27.34248 -25.00160 -24.13093 -23.39945 -23.01855 -22.05181 -21.41326 -20.94693 -19.24124 -18.58619 -17.69267 -17.28575 -17.14119 -16.94617 -16.71202 -16.47370 -16.22975 -15.81308 -15.56629 -15.47703 -15.21852 -15.00950 -14.62882 -14.44713 -14.01095 -13.85165 -13.73729 -13.34400 -13.09499 -13.06894 -12.95616 -12.83679 -12.70659 -12.54280 -12.42864 -12.28692 -12.15798 -12.10699 -11.95412 -11.93419 -11.65879 -11.61564 -11.25128 -11.02185 -10.83825 -10.57001 -10.32124 -9.75654 -8.75319 -7.77154 -5.19880 0.17998 0.74020 1.11396 1.44277 1.46650 1.52613 2.29831 2.52436 2.54621 2.89959 3.26670 3.27809 3.39134 3.49867 3.72774 3.73278 3.80647 3.93278 4.01964 4.06656 4.19377 4.19729 4.30173 4.36937 4.47549 4.52875 4.57544 4.67052 4.73601 4.79083 4.81480 4.87930 4.90046 4.94833 5.00633 5.04342 5.10277 5.21673 5.36860 5.44045 5.48051 5.68602 5.76312 5.76570 5.77940 6.35919 6.67291 7.00916 7.20386 7.36136 7.93396 8.36416 9.26174 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013223 B = 0.003275 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.949405 B = 8548.470046 C = 9949.776522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.119 3.881 3 H 0.050 0.950 4 C 0.139 3.861 5 N -0.612 5.612 6 C 0.178 3.822 7 C -0.239 4.239 8 H 0.073 0.927 9 C -0.041 4.041 10 N -0.931 5.931 11 Si 0.945 3.055 12 H -0.286 1.286 13 H -0.307 1.307 14 H -0.270 1.270 15 N -0.676 5.676 16 C 0.597 3.403 17 O -0.585 6.585 18 C -0.118 4.118 19 C 0.104 3.896 20 N -0.348 5.348 21 C 0.122 3.878 22 C -0.132 4.132 23 H 0.080 0.920 24 C -0.138 4.138 25 C 0.036 3.964 26 O -0.402 6.402 27 C 0.049 3.951 28 N -0.091 5.091 29 N -0.225 5.225 30 H 0.086 0.914 31 H 0.043 0.957 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.081 0.919 35 H -0.006 1.006 36 H 0.017 0.983 37 H 0.032 0.968 38 H 0.240 0.760 39 H 0.407 0.593 40 H 0.237 0.763 41 H 0.119 0.881 42 H 0.146 0.854 43 H 0.085 0.915 44 H 0.112 0.888 45 H 0.103 0.897 46 H 0.079 0.921 47 H 0.077 0.923 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.538 1.698 18.393 20.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.012 3.988 3 H 0.068 0.932 4 C 0.013 3.987 5 N -0.334 5.334 6 C 0.033 3.967 7 C -0.369 4.369 8 H 0.091 0.909 9 C -0.236 4.236 10 N -0.579 5.579 11 Si 0.775 3.225 12 H -0.213 1.213 13 H -0.235 1.235 14 H -0.195 1.195 15 N -0.322 5.322 16 C 0.382 3.618 17 O -0.467 6.467 18 C -0.258 4.258 19 C -0.053 4.053 20 N -0.133 5.133 21 C 0.003 3.997 22 C -0.152 4.152 23 H 0.099 0.901 24 C -0.176 4.176 25 C -0.040 4.040 26 O -0.321 6.321 27 C -0.028 4.028 28 N -0.071 5.071 29 N -0.098 5.098 30 H 0.105 0.895 31 H 0.062 0.938 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.099 0.901 35 H 0.013 0.987 36 H 0.035 0.965 37 H 0.051 0.949 38 H 0.049 0.951 39 H 0.242 0.758 40 H 0.253 0.747 41 H 0.137 0.863 42 H 0.164 0.836 43 H 0.103 0.897 44 H 0.130 0.870 45 H 0.121 0.879 46 H 0.097 0.903 47 H 0.095 0.905 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.391 0.932 18.521 20.354 hybrid contribution 1.178 -0.100 0.129 1.189 sum -7.213 0.831 18.650 20.014 Atomic orbital electron populations 1.22033 0.93471 1.02545 1.02440 1.21831 0.94353 0.96426 0.86161 0.93209 1.21421 0.83157 0.99380 0.94768 1.44154 1.00968 1.22052 1.66213 1.20505 0.92697 0.89863 0.93613 1.19311 0.95614 0.90611 1.31375 0.90894 1.25423 0.99698 0.97865 1.00622 1.70259 1.12201 1.23219 1.52180 0.85598 0.78599 0.81336 0.76942 1.21349 1.23487 1.19509 1.45668 1.63571 1.14534 1.08476 1.16998 0.76912 0.85311 0.82576 1.90682 1.54449 1.15751 1.85787 1.21616 1.15599 0.91705 0.96898 1.23753 0.95015 0.97557 0.89016 1.50741 1.43295 1.07460 1.11848 1.22647 1.02641 1.03147 0.71298 1.22805 0.95141 0.99872 0.97349 0.90116 1.22946 0.99103 1.04791 0.90725 1.23702 0.84850 1.01043 0.94419 1.89142 1.42543 1.83043 1.17391 1.23496 0.93549 1.00637 0.85140 1.81842 1.22783 1.06229 0.96253 1.74670 1.08629 1.14338 1.12208 0.89542 0.93760 0.91572 0.91827 0.90123 0.98739 0.96459 0.94919 0.95081 0.75753 0.74694 0.86314 0.83582 0.89660 0.86991 0.87889 0.90284 0.90529 0.91222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.21 9.48 71.98 0.68 -3.53 16 2 C 0.12 4.49 2.88 44.99 0.13 4.62 16 3 H 0.05 2.16 7.58 -2.38 -0.02 2.14 16 4 C 0.14 5.25 5.36 86.38 0.46 5.72 16 5 N -0.61 -29.62 2.82 -726.95 -2.05 -31.67 16 6 C 0.18 8.88 9.02 127.77 1.15 10.03 16 7 C -0.24 -12.66 8.02 84.03 0.67 -11.99 16 8 H 0.07 3.76 7.86 -2.91 -0.02 3.73 16 9 C -0.04 -2.30 5.06 84.86 0.43 -1.87 16 10 N -0.93 -56.02 10.67 21.65 0.23 -55.79 16 11 Si 0.94 46.86 29.58 68.60 2.03 48.89 16 12 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 13 H -0.31 -15.77 7.11 99.48 0.71 -15.06 16 14 H -0.27 -13.00 7.11 99.48 0.71 -12.29 16 15 N -0.68 -28.05 4.48 -445.70 -2.00 -30.05 16 16 C 0.60 25.11 7.78 86.69 0.67 25.78 16 17 O -0.59 -26.04 16.53 -4.03 -0.07 -26.11 16 18 C -0.12 -4.41 6.99 40.82 0.29 -4.12 16 19 C 0.10 2.79 11.27 83.85 0.95 3.74 16 20 N -0.35 -8.33 3.58 -347.11 -1.24 -9.57 16 21 C 0.12 1.50 5.69 86.38 0.49 1.99 16 22 C -0.13 -1.79 3.24 -9.78 -0.03 -1.82 16 23 H 0.08 1.51 8.06 -2.39 -0.02 1.49 16 24 C -0.14 -1.09 6.74 31.61 0.21 -0.88 16 25 C 0.04 0.36 7.63 72.48 0.55 0.91 16 26 O -0.40 -7.58 11.65 -148.98 -1.74 -9.31 16 27 C 0.05 0.81 7.08 72.48 0.51 1.33 16 28 N -0.09 -3.08 13.57 37.02 0.50 -2.58 16 29 N -0.23 -8.97 12.04 -50.00 -0.60 -9.57 16 30 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 33 H 0.06 2.25 8.03 -2.39 -0.02 2.23 16 34 H 0.08 2.61 7.86 -2.39 -0.02 2.60 16 35 H -0.01 -0.32 7.40 -2.39 -0.02 -0.34 16 36 H 0.02 0.91 7.21 -2.39 -0.02 0.89 16 37 H 0.03 1.36 7.83 -2.39 -0.02 1.34 16 38 H 0.24 14.37 8.31 -92.71 -0.77 13.60 16 39 H 0.41 17.67 7.09 -92.70 -0.66 17.02 16 40 H 0.24 4.35 8.06 -2.91 -0.02 4.33 16 41 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.15 0.68 7.90 -2.39 -0.02 0.66 16 43 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 44 H 0.11 0.29 7.73 -2.39 -0.02 0.27 16 45 H 0.10 0.81 8.14 -2.38 -0.02 0.79 16 46 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 47 H 0.08 1.02 7.75 -2.38 -0.02 1.00 16 48 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -78.34 396.29 2.55 -75.79 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: 0.31 Total: 20.08 kcal Atomic # 6 Polarization: 22.73 SS G_CDS: 7.18 Total: 29.90 kcal Atomic # 7 Polarization: -134.07 SS G_CDS: -5.16 Total: -139.23 kcal Atomic # 8 Polarization: -33.62 SS G_CDS: -1.80 Total: -35.42 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.03 Total: 48.89 kcal Total: -78.34 2.55 -75.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275689433.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.207 kcal (2) G-P(sol) polarization free energy of solvation -78.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds