Wall clock time and date at job start Tue Mar 31 2020 20:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46503 * 109.47113 * 2 1 4 4 C 1.34263 * 125.75347 * 125.30784 * 3 2 1 5 5 C 1.38046 * 107.41432 * 180.10670 * 4 3 2 6 6 C 1.47429 * 126.41215 * 179.86586 * 5 4 3 7 7 O 1.21606 * 119.99995 * 359.72154 * 6 5 4 8 8 N 1.34779 * 119.99883 * 179.71271 * 6 5 4 9 9 C 1.46496 * 120.00158 * 180.02562 * 8 6 5 10 10 C 1.53000 * 109.47385 * 180.02562 * 9 8 6 11 11 H 1.08988 * 109.46974 * 295.00252 * 10 9 8 12 12 C 1.53002 * 109.46895 * 175.00087 * 10 9 8 13 13 N 1.46898 * 109.46633 * 55.00334 * 10 9 8 14 14 C 1.46901 * 111.00524 * 66.04740 * 13 10 9 15 15 C 1.46906 * 110.99746 * 189.99859 * 13 10 9 16 16 C 1.50703 * 109.47109 * 169.99823 * 15 13 10 17 17 O 1.21296 * 119.99996 * 0.02562 * 16 15 13 18 18 N 1.34776 * 119.99978 * 180.02562 * 16 15 13 19 19 C 1.37099 * 119.99848 * 180.02562 * 18 16 15 20 20 H 1.07998 * 120.00405 * 359.97438 * 19 18 16 21 21 C 1.38953 * 119.99358 * 179.97438 * 19 18 16 22 22 N 1.31413 * 119.99517 * 179.97438 * 21 19 18 23 23 Si 1.86793 * 120.00588 * 359.97438 * 21 19 18 24 24 H 1.48505 * 109.47149 * 89.99828 * 23 21 19 25 25 H 1.48498 * 109.47388 * 209.99797 * 23 21 19 26 26 H 1.48501 * 109.46930 * 330.00192 * 23 21 19 27 27 C 1.41291 * 107.17177 * 359.61053 * 5 4 3 28 28 N 1.30448 * 108.01986 * 0.23580 * 27 5 4 29 29 H 1.09002 * 109.46982 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47332 * 300.00087 * 1 2 3 31 31 H 1.09006 * 109.47053 * 59.99943 * 1 2 3 32 32 H 1.09001 * 109.47332 * 239.99913 * 2 1 3 33 33 H 1.08997 * 109.47178 * 119.99839 * 2 1 3 34 34 H 1.07993 * 126.29153 * 359.96071 * 4 3 2 35 35 H 0.97000 * 119.99632 * 0.02562 * 8 6 5 36 36 H 1.09007 * 109.47099 * 59.99899 * 9 8 6 37 37 H 1.08998 * 109.47139 * 300.00757 * 9 8 6 38 38 H 1.09000 * 109.47057 * 300.00018 * 12 10 9 39 39 H 1.08996 * 109.47026 * 60.00351 * 12 10 9 40 40 H 1.09000 * 109.46787 * 180.02562 * 12 10 9 41 41 H 1.08998 * 109.47452 * 183.95577 * 14 13 10 42 42 H 1.09000 * 109.46497 * 303.95201 * 14 13 10 43 43 H 1.09001 * 109.46901 * 63.94983 * 14 13 10 44 44 H 1.08992 * 109.47459 * 289.99741 * 15 13 10 45 45 H 1.09004 * 109.47040 * 49.99892 * 15 13 10 46 46 H 0.97002 * 119.99767 * 359.97438 * 18 16 15 47 47 H 0.96997 * 120.00211 * 180.02562 * 22 21 19 48 48 H 1.08001 * 125.99022 * 180.23930 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8735 1.9110 0.8892 5 6 3.0717 3.2307 0.5361 6 6 3.9339 4.2029 1.2326 7 8 4.5518 3.8664 2.2244 8 7 4.0372 5.4646 0.7699 9 6 4.8943 6.4305 1.4616 10 6 4.8327 7.7771 0.7378 11 1 5.2610 7.6736 -0.2590 12 6 5.6275 8.8181 1.5288 13 7 3.4333 8.2098 0.6271 14 6 2.8651 8.4982 1.9507 15 6 3.3105 9.3720 -0.2630 16 6 1.8542 9.6351 -0.5476 17 8 1.0023 8.9247 -0.0568 18 7 1.4983 10.6597 -1.3475 19 6 0.1733 10.8994 -1.6060 20 1 -0.5852 10.2669 -1.1689 21 6 -0.1935 11.9562 -2.4302 22 7 -1.4634 12.1856 -2.6784 23 14 1.1183 13.0506 -3.1856 24 1 1.5307 12.4945 -4.4994 25 1 0.5722 14.4183 -3.3765 26 1 2.2949 13.1091 -2.2815 27 6 2.2983 3.4736 -0.6211 28 7 1.6772 2.3691 -0.9306 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.3219 1.3993 1.7279 35 1 3.5441 5.7330 -0.0210 36 1 5.9219 6.0667 1.4661 37 1 4.5483 6.5538 2.4878 38 1 5.1991 8.9215 2.5258 39 1 6.6658 8.4969 1.6110 40 1 5.5832 9.7775 1.0134 41 1 1.8093 8.7484 1.8463 42 1 2.9692 7.6213 2.5897 43 1 3.3952 9.3389 2.3983 44 1 3.7504 10.2458 0.2174 45 1 3.8328 9.1701 -1.1983 46 1 2.1795 11.2281 -1.7397 47 1 -1.7196 12.9231 -3.2541 48 1 2.2328 4.4098 -1.1557 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275789817.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:05 Heat of formation + Delta-G solvation = 19.589072 kcal Electronic energy + Delta-G solvation = -29097.870604 eV Core-core repulsion = 24997.247589 eV Total energy + Delta-G solvation = -4100.623016 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.47413 -39.55005 -38.71270 -37.34719 -34.78932 -34.28378 -33.80387 -31.68361 -31.15245 -30.69400 -29.73848 -28.03833 -26.50986 -25.41855 -24.19900 -23.62388 -22.55677 -20.83568 -20.10125 -19.72895 -19.31455 -18.25113 -17.93521 -16.59129 -16.17784 -15.93053 -15.84642 -15.46296 -14.97328 -14.95481 -14.76749 -14.43253 -14.25360 -14.05739 -13.75429 -13.32820 -13.17233 -13.08443 -12.87634 -12.79017 -12.67295 -12.49904 -12.44033 -12.17874 -11.92363 -11.81611 -11.62864 -11.34669 -11.27203 -11.06640 -11.00802 -10.77926 -10.60249 -9.97772 -9.79784 -9.73326 -9.53642 -9.02603 -8.67406 -8.58939 -8.18039 -7.95605 -6.31007 -3.82315 1.43852 2.13066 2.15516 3.01700 3.06208 3.14720 3.35753 3.55233 3.73992 3.90897 4.10060 4.14886 4.53033 4.57674 4.69346 4.73256 4.77000 4.81340 4.99111 5.08332 5.17489 5.19377 5.21846 5.27518 5.40901 5.44256 5.49839 5.50797 5.61885 5.70877 5.74587 5.76956 5.82000 5.88569 5.93012 5.96803 6.11252 6.32253 6.53793 6.60075 6.64879 7.13766 7.28200 7.41802 7.58579 7.74765 8.15094 8.41041 8.60376 8.95787 9.42817 9.83969 10.82188 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010954 B = 0.002675 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2555.539144 B =10464.301215 C =12479.807960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.127 3.873 3 N -0.364 5.364 4 C 0.123 3.877 5 C -0.291 4.291 6 C 0.595 3.405 7 O -0.565 6.565 8 N -0.709 5.709 9 C 0.135 3.865 10 C 0.063 3.937 11 H 0.088 0.912 12 C -0.185 4.185 13 N -0.510 5.510 14 C 0.016 3.984 15 C 0.041 3.959 16 C 0.453 3.547 17 O -0.558 6.558 18 N -0.592 5.592 19 C -0.303 4.303 20 H 0.120 0.880 21 C 0.041 3.959 22 N -0.882 5.882 23 Si 0.879 3.121 24 H -0.271 1.271 25 H -0.277 1.277 26 H -0.270 1.270 27 C 0.088 3.912 28 N -0.294 5.294 29 H 0.076 0.924 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.098 0.902 34 H 0.185 0.815 35 H 0.410 0.590 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.096 0.904 42 H 0.062 0.938 43 H 0.021 0.979 44 H 0.050 0.950 45 H 0.089 0.911 46 H 0.370 0.630 47 H 0.273 0.727 48 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.948 -17.938 5.445 23.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.006 3.994 3 N -0.143 5.143 4 C -0.029 4.029 5 C -0.306 4.306 6 C 0.383 3.617 7 O -0.445 6.445 8 N -0.360 5.360 9 C 0.011 3.989 10 C -0.046 4.046 11 H 0.106 0.894 12 C -0.244 4.244 13 N -0.234 5.234 14 C -0.131 4.131 15 C -0.090 4.090 16 C 0.238 3.762 17 O -0.439 6.439 18 N -0.232 5.232 19 C -0.432 4.432 20 H 0.137 0.863 21 C -0.162 4.162 22 N -0.522 5.522 23 Si 0.706 3.294 24 H -0.196 1.196 25 H -0.203 1.203 26 H -0.196 1.196 27 C -0.100 4.100 28 N -0.114 5.114 29 H 0.095 0.905 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.106 0.894 33 H 0.116 0.884 34 H 0.202 0.798 35 H 0.246 0.754 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.114 0.886 42 H 0.081 0.919 43 H 0.039 0.961 44 H 0.068 0.932 45 H 0.107 0.893 46 H 0.202 0.798 47 H 0.084 0.916 48 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 12.477 -19.625 5.333 23.859 hybrid contribution 1.694 2.327 -0.167 2.883 sum 14.172 -17.298 5.167 22.951 Atomic orbital electron populations 1.22066 0.93337 1.03031 1.04048 1.21800 0.96524 0.76978 1.04053 1.48669 1.34163 1.10666 1.20811 1.22932 0.91810 0.93691 0.94423 1.20256 1.11619 0.95234 1.03491 1.17210 0.80121 0.81393 0.83014 1.90736 1.47808 1.79268 1.26690 1.45578 1.48378 1.09784 1.32282 1.21324 0.94355 0.86894 0.96365 1.22057 0.89059 0.93727 0.99804 0.89359 1.22399 1.00762 0.99748 1.01527 1.61797 1.14697 1.34511 1.12378 1.22610 1.02631 0.99149 0.88734 1.21929 0.96846 0.92552 0.97703 1.19644 0.89557 0.83333 0.83624 1.90536 1.51679 1.48621 1.53102 1.42219 1.08158 1.28063 1.44712 1.19418 0.82028 1.13977 1.27770 0.86272 1.25038 0.96236 0.97465 0.97461 1.69621 1.14906 1.30594 1.37080 0.86680 0.81454 0.81185 0.80097 1.19615 1.20252 1.19568 1.24200 0.93465 0.97452 0.94915 1.77189 1.23665 0.97212 1.13315 0.90540 0.91855 0.90759 0.89391 0.88387 0.79778 0.75350 0.91299 0.91461 0.91688 0.91874 0.91926 0.88558 0.91945 0.96083 0.93161 0.89316 0.79786 0.91639 0.79042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.06 10.09 37.15 0.37 -0.68 16 2 C 0.13 0.78 7.21 -4.04 -0.03 0.75 16 3 N -0.36 -3.71 3.65 -60.81 -0.22 -3.93 16 4 C 0.12 1.30 11.25 -16.56 -0.19 1.11 16 5 C -0.29 -3.65 6.13 -105.06 -0.64 -4.29 16 6 C 0.59 8.28 7.81 -12.52 -0.10 8.18 16 7 O -0.56 -9.34 16.90 5.27 0.09 -9.25 16 8 N -0.71 -8.78 5.38 -61.38 -0.33 -9.11 16 9 C 0.14 1.54 4.85 -4.04 -0.02 1.52 16 10 C 0.06 0.68 2.47 -67.71 -0.17 0.51 16 11 H 0.09 0.86 7.93 -51.94 -0.41 0.45 16 12 C -0.19 -1.74 8.44 37.16 0.31 -1.42 16 13 N -0.51 -7.23 3.89 -236.33 -0.92 -8.15 16 14 C 0.02 0.25 8.32 60.07 0.50 0.75 16 15 C 0.04 0.63 5.02 -4.97 -0.02 0.61 16 16 C 0.45 9.74 7.51 -10.98 -0.08 9.65 16 17 O -0.56 -14.14 13.88 5.54 0.08 -14.06 16 18 N -0.59 -13.63 5.09 -10.96 -0.06 -13.69 16 19 C -0.30 -8.40 10.16 -14.93 -0.15 -8.55 16 20 H 0.12 3.79 7.39 -52.49 -0.39 3.40 16 21 C 0.04 1.11 5.50 -17.47 -0.10 1.01 16 22 N -0.88 -25.58 13.96 55.50 0.77 -24.80 16 23 Si 0.88 19.10 27.74 -169.99 -4.71 14.38 16 24 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 25 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 26 H -0.27 -5.32 6.52 56.52 0.37 -4.95 16 27 C 0.09 1.08 11.50 -16.98 -0.20 0.89 16 28 N -0.29 -3.76 12.33 30.86 0.38 -3.38 16 29 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.10 0.33 8.06 -51.93 -0.42 -0.09 16 34 H 0.19 1.47 8.06 -52.49 -0.42 1.05 16 35 H 0.41 4.93 7.09 -40.82 -0.29 4.64 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.84 6.71 -51.93 -0.35 0.49 16 38 H 0.06 0.64 6.42 -51.93 -0.33 0.31 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.59 6.91 -51.93 -0.36 0.24 16 41 H 0.10 1.82 5.88 -51.93 -0.31 1.51 16 42 H 0.06 0.88 6.40 -51.93 -0.33 0.55 16 43 H 0.02 0.28 6.46 -51.93 -0.34 -0.05 16 44 H 0.05 0.70 7.06 -51.93 -0.37 0.33 16 45 H 0.09 1.16 7.93 -51.93 -0.41 0.75 16 46 H 0.37 7.48 5.76 -40.82 -0.24 7.25 16 47 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 48 H 0.19 2.07 7.50 -52.49 -0.39 1.67 16 LS Contribution 392.54 15.07 5.92 5.92 Total: -1.00 -35.46 392.54 -6.57 -42.03 By element: Atomic # 1 Polarization: 21.09 SS G_CDS: -7.06 Total: 14.03 kcal Atomic # 6 Polarization: 10.52 SS G_CDS: -0.51 Total: 10.02 kcal Atomic # 7 Polarization: -62.68 SS G_CDS: -0.37 Total: -63.05 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: 0.17 Total: -23.32 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -4.71 Total: 14.38 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.46 -6.57 -42.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275789817.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.616 kcal (2) G-P(sol) polarization free energy of solvation -35.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds