Wall clock time and date at job start Tue Mar 31 2020 20:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46503 * 109.47113 * 2 1 4 4 C 1.34263 * 125.75347 * 125.30784 * 3 2 1 5 5 C 1.38046 * 107.41432 * 180.10670 * 4 3 2 6 6 C 1.47429 * 126.41215 * 179.86586 * 5 4 3 7 7 O 1.21606 * 119.99995 * 359.72154 * 6 5 4 8 8 N 1.34779 * 119.99883 * 179.71271 * 6 5 4 9 9 C 1.46496 * 120.00158 * 180.02562 * 8 6 5 10 10 C 1.53000 * 109.47385 * 180.02562 * 9 8 6 11 11 H 1.08988 * 109.46974 * 295.00252 * 10 9 8 12 12 C 1.53002 * 109.46895 * 175.00087 * 10 9 8 13 13 N 1.46898 * 109.46633 * 55.00334 * 10 9 8 14 14 C 1.46901 * 111.00524 * 66.04740 * 13 10 9 15 15 C 1.46906 * 110.99746 * 189.99859 * 13 10 9 16 16 C 1.50703 * 109.47109 * 169.99823 * 15 13 10 17 17 O 1.21296 * 119.99996 * 0.02562 * 16 15 13 18 18 N 1.34776 * 119.99978 * 180.02562 * 16 15 13 19 19 C 1.37099 * 119.99848 * 180.02562 * 18 16 15 20 20 H 1.07998 * 120.00405 * 359.97438 * 19 18 16 21 21 C 1.38953 * 119.99358 * 179.97438 * 19 18 16 22 22 N 1.31413 * 119.99517 * 179.97438 * 21 19 18 23 23 Si 1.86793 * 120.00588 * 359.97438 * 21 19 18 24 24 H 1.48505 * 109.47149 * 89.99828 * 23 21 19 25 25 H 1.48498 * 109.47388 * 209.99797 * 23 21 19 26 26 H 1.48501 * 109.46930 * 330.00192 * 23 21 19 27 27 C 1.41291 * 107.17177 * 359.61053 * 5 4 3 28 28 N 1.30448 * 108.01986 * 0.23580 * 27 5 4 29 29 H 1.09002 * 109.46982 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47332 * 300.00087 * 1 2 3 31 31 H 1.09006 * 109.47053 * 59.99943 * 1 2 3 32 32 H 1.09001 * 109.47332 * 239.99913 * 2 1 3 33 33 H 1.08997 * 109.47178 * 119.99839 * 2 1 3 34 34 H 1.07993 * 126.29153 * 359.96071 * 4 3 2 35 35 H 0.97000 * 119.99632 * 0.02562 * 8 6 5 36 36 H 1.09007 * 109.47099 * 59.99899 * 9 8 6 37 37 H 1.08998 * 109.47139 * 300.00757 * 9 8 6 38 38 H 1.09000 * 109.47057 * 300.00018 * 12 10 9 39 39 H 1.08996 * 109.47026 * 60.00351 * 12 10 9 40 40 H 1.09000 * 109.46787 * 180.02562 * 12 10 9 41 41 H 1.08998 * 109.47452 * 183.95577 * 14 13 10 42 42 H 1.09000 * 109.46497 * 303.95201 * 14 13 10 43 43 H 1.09001 * 109.46901 * 63.94983 * 14 13 10 44 44 H 1.08992 * 109.47459 * 289.99741 * 15 13 10 45 45 H 1.09004 * 109.47040 * 49.99892 * 15 13 10 46 46 H 0.97002 * 119.99767 * 359.97438 * 18 16 15 47 47 H 0.96997 * 120.00211 * 180.02562 * 22 21 19 48 48 H 1.08001 * 125.99022 * 180.23930 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8735 1.9110 0.8892 5 6 3.0717 3.2307 0.5361 6 6 3.9339 4.2029 1.2326 7 8 4.5518 3.8664 2.2244 8 7 4.0372 5.4646 0.7699 9 6 4.8943 6.4305 1.4616 10 6 4.8327 7.7771 0.7378 11 1 5.2610 7.6736 -0.2590 12 6 5.6275 8.8181 1.5288 13 7 3.4333 8.2098 0.6271 14 6 2.8651 8.4982 1.9507 15 6 3.3105 9.3720 -0.2630 16 6 1.8542 9.6351 -0.5476 17 8 1.0023 8.9247 -0.0568 18 7 1.4983 10.6597 -1.3475 19 6 0.1733 10.8994 -1.6060 20 1 -0.5852 10.2669 -1.1689 21 6 -0.1935 11.9562 -2.4302 22 7 -1.4634 12.1856 -2.6784 23 14 1.1183 13.0506 -3.1856 24 1 1.5307 12.4945 -4.4994 25 1 0.5722 14.4183 -3.3765 26 1 2.2949 13.1091 -2.2815 27 6 2.2983 3.4736 -0.6211 28 7 1.6772 2.3691 -0.9306 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.3219 1.3993 1.7279 35 1 3.5441 5.7330 -0.0210 36 1 5.9219 6.0667 1.4661 37 1 4.5483 6.5538 2.4878 38 1 5.1991 8.9215 2.5258 39 1 6.6658 8.4969 1.6110 40 1 5.5832 9.7775 1.0134 41 1 1.8093 8.7484 1.8463 42 1 2.9692 7.6213 2.5897 43 1 3.3952 9.3389 2.3983 44 1 3.7504 10.2458 0.2174 45 1 3.8328 9.1701 -1.1983 46 1 2.1795 11.2281 -1.7397 47 1 -1.7196 12.9231 -3.2541 48 1 2.2328 4.4098 -1.1557 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275789817.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:04 Heat of formation + Delta-G solvation = -9.066606 kcal Electronic energy + Delta-G solvation = -29099.113208 eV Core-core repulsion = 24997.247589 eV Total energy + Delta-G solvation = -4101.865619 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.34136 -40.76835 -40.06263 -38.67833 -35.97876 -35.50053 -35.10071 -33.70290 -32.17921 -31.52614 -30.54006 -29.39903 -27.35582 -26.98641 -25.27843 -24.69919 -23.51303 -21.65220 -21.29613 -21.01972 -20.66179 -20.04612 -18.82183 -17.91222 -17.12943 -16.90777 -16.87798 -16.69683 -16.54888 -16.25360 -15.71925 -15.60510 -15.35722 -15.05497 -14.85791 -14.68050 -14.60009 -14.26333 -14.10146 -13.90106 -13.68917 -13.49356 -13.36629 -13.10160 -12.99060 -12.84660 -12.76545 -12.45716 -12.40402 -12.33735 -12.24555 -11.95043 -11.88558 -11.69093 -11.41685 -10.87278 -10.58050 -10.30626 -10.18417 -10.04127 -9.57170 -9.13678 -8.37431 -5.97425 0.57620 1.17840 1.32050 1.38117 1.43607 1.46399 2.03633 2.25978 2.39037 2.54702 2.68685 3.19105 3.32246 3.50215 3.80362 3.82584 4.02235 4.06446 4.08540 4.17591 4.24207 4.34917 4.36513 4.40063 4.43575 4.48761 4.60209 4.68388 4.71142 4.72193 4.78601 4.87957 4.90422 4.92551 5.06176 5.20991 5.25636 5.36126 5.42859 5.57541 5.60807 5.92521 5.94822 6.05903 6.23403 6.52562 6.64886 6.74091 6.94553 7.37717 7.46389 8.05016 8.80493 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010954 B = 0.002675 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2555.539144 B =10464.301215 C =12479.807960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.117 3.883 3 N -0.358 5.358 4 C 0.132 3.868 5 C -0.316 4.316 6 C 0.593 3.407 7 O -0.596 6.596 8 N -0.706 5.706 9 C 0.135 3.865 10 C 0.071 3.929 11 H 0.110 0.890 12 C -0.181 4.181 13 N -0.526 5.526 14 C 0.026 3.974 15 C 0.054 3.946 16 C 0.453 3.547 17 O -0.603 6.603 18 N -0.595 5.595 19 C -0.322 4.322 20 H 0.054 0.946 21 C -0.018 4.018 22 N -0.939 5.939 23 Si 0.964 3.036 24 H -0.257 1.257 25 H -0.279 1.279 26 H -0.230 1.230 27 C 0.081 3.919 28 N -0.324 5.324 29 H 0.104 0.896 30 H 0.050 0.950 31 H 0.049 0.951 32 H 0.101 0.899 33 H 0.133 0.867 34 H 0.212 0.788 35 H 0.412 0.588 36 H 0.081 0.919 37 H 0.054 0.946 38 H 0.057 0.943 39 H 0.083 0.917 40 H 0.068 0.932 41 H 0.050 0.950 42 H 0.065 0.935 43 H 0.039 0.961 44 H 0.078 0.922 45 H 0.125 0.875 46 H 0.389 0.611 47 H 0.277 0.723 48 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.949 -18.028 5.064 25.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.002 4.002 3 N -0.137 5.137 4 C -0.021 4.021 5 C -0.331 4.331 6 C 0.382 3.618 7 O -0.479 6.479 8 N -0.355 5.355 9 C 0.011 3.989 10 C -0.037 4.037 11 H 0.128 0.872 12 C -0.240 4.240 13 N -0.250 5.250 14 C -0.122 4.122 15 C -0.077 4.077 16 C 0.241 3.759 17 O -0.487 6.487 18 N -0.237 5.237 19 C -0.451 4.451 20 H 0.072 0.928 21 C -0.216 4.216 22 N -0.580 5.580 23 Si 0.784 3.216 24 H -0.182 1.182 25 H -0.204 1.204 26 H -0.153 1.153 27 C -0.106 4.106 28 N -0.144 5.144 29 H 0.122 0.878 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.119 0.881 33 H 0.151 0.849 34 H 0.229 0.771 35 H 0.248 0.752 36 H 0.100 0.900 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.102 0.898 40 H 0.087 0.913 41 H 0.069 0.931 42 H 0.084 0.916 43 H 0.057 0.943 44 H 0.096 0.904 45 H 0.143 0.857 46 H 0.224 0.776 47 H 0.087 0.913 48 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 16.498 -19.729 4.946 26.190 hybrid contribution 0.344 2.155 0.046 2.183 sum 16.842 -17.575 4.993 24.849 Atomic orbital electron populations 1.22039 0.93661 1.04258 1.02148 1.22248 0.96277 0.75197 1.06481 1.49022 1.33420 1.11469 1.19793 1.23361 0.90973 0.93192 0.94534 1.20318 1.12581 0.96116 1.04127 1.17404 0.79857 0.81898 0.82635 1.90707 1.49285 1.79873 1.28045 1.45614 1.48188 1.09609 1.32133 1.21407 0.94668 0.87153 0.95690 1.22100 0.86974 0.93411 1.01229 0.87249 1.22368 1.01559 0.99329 1.00776 1.61688 1.17373 1.34248 1.11683 1.22387 1.00141 0.99977 0.89686 1.21861 0.91753 0.94186 0.99896 1.20949 0.92205 0.81481 0.81291 1.90536 1.54113 1.49868 1.54144 1.42049 1.06580 1.29314 1.45796 1.18973 0.83314 1.14080 1.28771 0.92756 1.26110 0.99263 0.98863 0.97389 1.69813 1.18094 1.31766 1.38296 0.85373 0.78708 0.77658 0.79823 1.18154 1.20423 1.15302 1.24322 0.93457 0.97749 0.95100 1.77125 1.24523 0.97996 1.14800 0.87755 0.93119 0.93207 0.88058 0.84864 0.77149 0.75188 0.90049 0.92790 0.92433 0.89846 0.91270 0.93100 0.91610 0.94297 0.90392 0.85740 0.77605 0.91322 0.78627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.92 10.09 71.98 0.73 -1.20 16 2 C 0.12 1.21 7.21 86.38 0.62 1.83 16 3 N -0.36 -6.97 3.65 -346.30 -1.26 -8.24 16 4 C 0.13 2.65 11.25 84.28 0.95 3.60 16 5 C -0.32 -7.91 6.13 -20.15 -0.12 -8.03 16 6 C 0.59 16.37 7.81 86.66 0.68 17.04 16 7 O -0.60 -19.50 16.90 -4.05 -0.07 -19.57 16 8 N -0.71 -16.96 5.38 -466.37 -2.51 -19.47 16 9 C 0.13 2.83 4.85 86.38 0.42 3.25 16 10 C 0.07 1.30 2.47 44.92 0.11 1.41 16 11 H 0.11 1.62 7.93 -2.39 -0.02 1.60 16 12 C -0.18 -2.67 8.44 71.98 0.61 -2.06 16 13 N -0.53 -13.90 3.89 -901.62 -3.51 -17.41 16 14 C 0.03 0.77 8.32 127.69 1.06 1.84 16 15 C 0.05 1.49 5.02 85.56 0.43 1.92 16 16 C 0.45 19.39 7.51 87.66 0.66 20.05 16 17 O -0.60 -31.98 13.88 -3.08 -0.04 -32.02 16 18 N -0.60 -27.14 5.09 -306.98 -1.56 -28.70 16 19 C -0.32 -18.60 10.16 84.04 0.85 -17.74 16 20 H 0.05 3.76 7.39 -2.91 -0.02 3.74 16 21 C -0.02 -1.01 5.50 84.93 0.47 -0.54 16 22 N -0.94 -56.70 13.96 21.66 0.30 -56.39 16 23 Si 0.96 38.34 27.74 68.60 1.90 40.24 16 24 H -0.26 -9.67 7.11 99.48 0.71 -8.97 16 25 H -0.28 -11.14 7.11 99.48 0.71 -10.44 16 26 H -0.23 -7.57 6.52 99.48 0.65 -6.93 16 27 C 0.08 2.05 11.50 85.65 0.99 3.03 16 28 N -0.32 -8.38 12.33 -56.27 -0.69 -9.08 16 29 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 32 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.13 0.47 8.06 -2.39 -0.02 0.45 16 34 H 0.21 2.93 8.06 -2.91 -0.02 2.90 16 35 H 0.41 9.67 7.09 -92.71 -0.66 9.01 16 36 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 37 H 0.05 1.29 6.71 -2.39 -0.02 1.28 16 38 H 0.06 0.95 6.42 -2.39 -0.02 0.94 16 39 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.07 0.97 6.91 -2.39 -0.02 0.95 16 41 H 0.05 1.99 5.88 -2.39 -0.01 1.98 16 42 H 0.07 1.86 6.40 -2.39 -0.02 1.85 16 43 H 0.04 0.99 6.46 -2.39 -0.02 0.98 16 44 H 0.08 1.81 7.06 -2.39 -0.02 1.79 16 45 H 0.12 2.65 7.93 -2.38 -0.02 2.63 16 46 H 0.39 14.57 5.76 -92.71 -0.53 14.03 16 47 H 0.28 15.35 8.31 -92.71 -0.77 14.58 16 48 H 0.20 4.43 7.50 -2.91 -0.02 4.41 16 Total: -1.00 -84.83 392.54 0.75 -84.08 By element: Atomic # 1 Polarization: 42.39 SS G_CDS: -0.25 Total: 42.14 kcal Atomic # 6 Polarization: 15.95 SS G_CDS: 8.44 Total: 24.40 kcal Atomic # 7 Polarization: -130.04 SS G_CDS: -9.24 Total: -139.28 kcal Atomic # 8 Polarization: -51.48 SS G_CDS: -0.11 Total: -51.59 kcal Atomic # 14 Polarization: 38.34 SS G_CDS: 1.90 Total: 40.24 kcal Total: -84.83 0.75 -84.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275789817.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.015 kcal (2) G-P(sol) polarization free energy of solvation -84.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds