Wall clock time and date at job start Tue Mar 31 2020 20:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46499 * 109.47348 * 2 1 4 4 N 1.28448 * 125.19099 * 274.51741 * 3 2 1 5 5 C 1.30864 * 110.92583 * 180.15720 * 4 3 2 6 6 C 1.39673 * 107.86263 * 359.61405 * 5 4 3 7 7 C 1.36596 * 125.18821 * 94.24739 * 3 2 1 8 8 C 1.47160 * 126.88693 * 0.03260 * 7 3 2 9 9 O 1.21630 * 120.00020 * 354.37504 * 8 7 3 10 10 N 1.34780 * 120.00317 * 174.37320 * 8 7 3 11 11 C 1.46495 * 120.00271 * 185.11082 * 10 8 7 12 12 C 1.53002 * 109.47059 * 179.97438 * 11 10 8 13 13 H 1.08995 * 109.47227 * 65.00323 * 12 11 10 14 14 C 1.53004 * 109.46948 * 185.00435 * 12 11 10 15 15 N 1.46903 * 109.47232 * 304.99988 * 12 11 10 16 16 C 1.46903 * 111.00015 * 298.95691 * 15 12 11 17 17 C 1.46900 * 110.99733 * 174.99782 * 15 12 11 18 18 C 1.50697 * 109.46593 * 190.00111 * 17 15 12 19 19 O 1.21286 * 120.00656 * 0.02562 * 18 17 15 20 20 N 1.34785 * 119.99655 * 180.02562 * 18 17 15 21 21 C 1.37095 * 119.99748 * 180.02562 * 20 18 17 22 22 H 1.07994 * 120.00579 * 359.97438 * 21 20 18 23 23 C 1.38951 * 119.99943 * 179.97438 * 21 20 18 24 24 N 1.31423 * 119.99842 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00460 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47034 * 59.99985 * 25 23 21 27 27 H 1.48496 * 109.47651 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.47000 * 300.00098 * 25 23 21 29 29 H 1.09000 * 109.47719 * 59.99604 * 1 2 3 30 30 H 1.09002 * 109.47594 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46673 * 299.99615 * 1 2 3 32 32 H 1.09006 * 109.46673 * 240.00385 * 2 1 3 33 33 H 1.08996 * 109.47270 * 120.00202 * 2 1 3 34 34 H 1.08002 * 126.06365 * 179.87336 * 5 4 3 35 35 H 1.07995 * 127.31765 * 180.24295 * 6 5 4 36 36 H 0.96998 * 119.99442 * 5.11191 * 10 8 7 37 37 H 1.09000 * 109.46985 * 300.00374 * 11 10 8 38 38 H 1.08999 * 109.46700 * 60.00321 * 11 10 8 39 39 H 1.08996 * 109.47094 * 180.02562 * 14 12 11 40 40 H 1.09007 * 109.46572 * 300.00063 * 14 12 11 41 41 H 1.08995 * 109.47248 * 59.99901 * 14 12 11 42 42 H 1.08992 * 109.47294 * 60.00148 * 16 15 12 43 43 H 1.08998 * 109.46371 * 179.97438 * 16 15 12 44 44 H 1.08999 * 109.46908 * 299.99636 * 16 15 12 45 45 H 1.08998 * 109.47360 * 310.00468 * 17 15 12 46 46 H 1.08998 * 109.46990 * 70.00450 * 17 15 12 47 47 H 0.97001 * 120.00097 * 359.97438 * 20 18 17 48 48 H 0.96991 * 119.99631 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.1872 2.1067 -1.0465 5 6 2.6371 3.2928 -0.7253 6 6 2.7637 3.3410 0.6649 7 6 2.3587 2.0957 1.1133 8 6 2.3061 1.6339 2.5096 9 8 1.8326 0.5449 2.7725 10 7 2.7827 2.4177 3.4971 11 6 2.8336 1.9143 4.8719 12 6 3.4119 2.9937 5.7891 13 1 2.7338 3.8465 5.8193 14 6 3.5815 2.4268 7.2001 15 7 4.7185 3.4251 5.2745 16 6 5.6680 2.3045 5.2431 17 6 5.2511 4.5446 6.0626 18 6 6.4594 5.1177 5.3679 19 8 6.8391 4.6410 4.3193 20 7 7.1180 6.1603 5.9119 21 6 8.2169 6.6821 5.2797 22 1 8.5550 6.2576 4.3460 23 6 8.8956 7.7572 5.8402 24 7 8.4839 8.2741 6.9762 25 14 10.3925 8.4688 4.9785 26 1 10.0032 8.9539 3.6301 27 1 10.9314 9.5999 5.7755 28 1 11.4330 7.4177 4.8451 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5138 0.8899 34 1 2.8656 4.0938 -1.4128 35 1 3.1047 4.1732 1.2627 36 1 3.0919 3.3151 3.2974 37 1 1.8271 1.6573 5.2021 38 1 3.4664 1.0277 4.9108 39 1 3.9930 3.1958 7.8536 40 1 2.6119 2.1067 7.5819 41 1 4.2596 1.5740 7.1699 42 1 5.2801 1.5177 4.5962 43 1 6.6267 2.6515 4.8577 44 1 5.8015 1.9130 6.2515 45 1 4.4876 5.3163 6.1597 46 1 5.5360 4.1887 7.0527 47 1 6.8141 6.5418 6.7504 48 1 8.9579 9.0244 7.3676 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275812064.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:07 Heat of formation + Delta-G solvation = 16.499862 kcal Electronic energy + Delta-G solvation = -29498.972879 eV Core-core repulsion = 25398.215905 eV Total energy + Delta-G solvation = -4100.756974 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.59614 -39.74371 -38.78607 -37.32276 -34.96840 -34.21490 -33.81316 -31.57570 -31.24324 -30.47504 -29.90216 -27.98301 -26.59222 -25.40861 -24.27008 -23.85851 -22.83963 -21.37820 -20.31635 -19.66541 -19.10306 -18.02064 -17.85428 -16.61352 -16.36275 -16.20995 -15.70898 -15.48948 -14.96737 -14.82087 -14.71409 -14.56867 -14.30232 -14.10650 -13.88750 -13.54927 -13.32857 -13.13313 -12.97785 -12.86944 -12.70370 -12.32002 -12.30574 -11.92830 -11.80366 -11.51591 -11.47545 -11.26143 -11.23258 -10.95424 -10.89504 -10.79454 -10.45954 -10.23480 -10.14046 -9.48789 -9.38225 -9.14238 -8.99388 -8.51059 -8.01023 -7.90328 -6.43966 -3.84776 1.19127 2.25890 2.55590 3.09386 3.18372 3.20757 3.24543 3.28619 3.86854 3.91057 4.21557 4.37940 4.55096 4.62211 4.74507 4.88112 4.91022 5.03342 5.07917 5.09032 5.16314 5.22905 5.37285 5.39016 5.44663 5.48313 5.51475 5.62968 5.67823 5.72386 5.74119 5.80640 5.85370 5.87393 5.94809 6.11721 6.24493 6.31836 6.43429 6.53370 6.64338 7.17312 7.29106 7.41966 7.52986 7.95955 8.03743 8.07676 8.59215 9.15934 9.52001 10.03618 10.73626 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013753 B = 0.002575 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.384178 B =10869.215488 C =12487.941048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.112 3.888 3 N -0.257 5.257 4 N -0.281 5.281 5 C -0.004 4.004 6 C -0.180 4.180 7 C -0.039 4.039 8 C 0.591 3.409 9 O -0.552 6.552 10 N -0.696 5.696 11 C 0.133 3.867 12 C 0.063 3.937 13 H 0.090 0.910 14 C -0.186 4.186 15 N -0.511 5.511 16 C 0.016 3.984 17 C 0.044 3.956 18 C 0.443 3.557 19 O -0.577 6.577 20 N -0.564 5.564 21 C -0.299 4.299 22 H 0.102 0.898 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.930 3.070 26 H -0.273 1.273 27 H -0.285 1.285 28 H -0.274 1.274 29 H 0.062 0.938 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.095 0.905 33 H 0.116 0.884 34 H 0.186 0.814 35 H 0.164 0.836 36 H 0.416 0.584 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.059 0.941 43 H 0.096 0.904 44 H 0.020 0.980 45 H 0.088 0.912 46 H 0.050 0.950 47 H 0.392 0.608 48 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.344 -12.117 -4.770 20.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.007 4.007 3 N -0.046 5.046 4 N -0.113 5.113 5 C -0.180 4.180 6 C -0.209 4.209 7 C -0.167 4.167 8 C 0.376 3.624 9 O -0.432 6.432 10 N -0.347 5.347 11 C 0.009 3.991 12 C -0.047 4.047 13 H 0.108 0.892 14 C -0.245 4.245 15 N -0.234 5.234 16 C -0.131 4.131 17 C -0.087 4.087 18 C 0.228 3.772 19 O -0.461 6.461 20 N -0.201 5.201 21 C -0.428 4.428 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.543 5.543 25 Si 0.757 3.243 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.200 1.200 29 H 0.081 0.919 30 H 0.097 0.903 31 H 0.083 0.917 32 H 0.113 0.887 33 H 0.134 0.866 34 H 0.203 0.797 35 H 0.182 0.818 36 H 0.253 0.747 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.114 0.886 44 H 0.039 0.961 45 H 0.106 0.894 46 H 0.068 0.932 47 H 0.225 0.775 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -15.740 -13.696 -6.554 21.870 hybrid contribution 1.136 1.428 1.635 2.450 sum -14.604 -12.268 -4.919 19.697 Atomic orbital electron populations 1.22065 0.93582 1.03320 1.03020 1.22158 0.96149 0.76752 1.05682 1.45803 1.44598 1.12217 1.01941 1.73177 1.19021 1.05213 1.13899 1.23589 1.04045 0.95175 0.95166 1.22385 1.05790 0.96984 0.95767 1.21378 1.11231 0.94297 0.89821 1.16896 0.78031 0.84283 0.83182 1.90750 1.46646 1.21741 1.84037 1.45527 1.63238 1.18831 1.07124 1.21447 1.00880 0.96685 0.80071 1.22058 0.92705 0.97541 0.92358 0.89179 1.22401 1.02644 1.02218 0.97263 1.61829 1.02091 1.07845 1.51663 1.22600 0.98642 0.92822 0.99078 1.21880 0.97669 0.94063 0.95076 1.19722 0.86141 0.83732 0.87562 1.90492 1.69205 1.62234 1.24172 1.41866 1.26525 1.28556 1.23112 1.19632 1.03939 1.12526 1.06715 0.87974 1.25256 0.99540 0.96932 0.96191 1.69603 1.41305 1.25323 1.18112 0.85930 0.80985 0.78356 0.79032 1.19859 1.21007 1.19952 0.91904 0.90252 0.91660 0.88692 0.86554 0.79653 0.81838 0.74684 0.90861 0.91152 0.91556 0.91868 0.91788 0.92184 0.88563 0.96124 0.89427 0.93168 0.77537 0.91828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 10.24 37.16 0.38 -1.01 16 2 C 0.11 1.13 6.58 -4.04 -0.03 1.10 16 3 N -0.26 -3.25 3.35 -57.14 -0.19 -3.44 16 4 N -0.28 -3.66 11.90 30.59 0.36 -3.29 16 5 C 0.00 -0.05 12.03 -17.43 -0.21 -0.26 16 6 C -0.18 -2.16 10.50 -38.98 -0.41 -2.57 16 7 C -0.04 -0.51 6.96 -82.06 -0.57 -1.08 16 8 C 0.59 7.81 7.78 -12.64 -0.10 7.71 16 9 O -0.55 -8.14 14.68 5.25 0.08 -8.06 16 10 N -0.70 -8.20 5.38 -61.47 -0.33 -8.53 16 11 C 0.13 1.43 4.69 -4.04 -0.02 1.41 16 12 C 0.06 0.67 2.50 -67.71 -0.17 0.50 16 13 H 0.09 0.89 8.03 -51.93 -0.42 0.47 16 14 C -0.19 -1.75 8.50 37.16 0.32 -1.43 16 15 N -0.51 -7.25 3.93 -236.33 -0.93 -8.18 16 16 C 0.02 0.24 8.46 60.07 0.51 0.75 16 17 C 0.04 0.71 4.89 -4.98 -0.02 0.68 16 18 C 0.44 9.74 7.47 -10.98 -0.08 9.66 16 19 O -0.58 -14.55 13.91 5.55 0.08 -14.47 16 20 N -0.56 -13.64 5.29 -10.97 -0.06 -13.70 16 21 C -0.30 -8.05 9.68 -14.93 -0.14 -8.20 16 22 H 0.10 2.89 7.16 -52.49 -0.38 2.52 16 23 C 0.02 0.59 5.50 -17.46 -0.10 0.49 16 24 N -0.90 -23.98 13.05 55.50 0.72 -23.26 16 25 Si 0.93 20.66 29.55 -169.99 -5.02 15.64 16 26 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 27 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 28 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.12 1.25 6.20 -51.93 -0.32 0.93 16 34 H 0.19 1.61 8.06 -52.49 -0.42 1.19 16 35 H 0.16 1.71 7.59 -52.49 -0.40 1.31 16 36 H 0.42 4.87 7.17 -40.82 -0.29 4.58 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.81 6.70 -51.93 -0.35 0.47 16 39 H 0.07 0.65 6.75 -51.93 -0.35 0.30 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.63 6.39 -51.93 -0.33 0.30 16 42 H 0.06 0.84 6.44 -51.93 -0.33 0.51 16 43 H 0.10 1.81 5.82 -51.93 -0.30 1.51 16 44 H 0.02 0.28 6.28 -51.93 -0.33 -0.05 16 45 H 0.09 1.25 8.00 -51.93 -0.42 0.83 16 46 H 0.05 0.74 6.94 -51.93 -0.36 0.38 16 47 H 0.39 9.09 7.90 -40.82 -0.32 8.76 16 48 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 390.73 15.07 5.89 5.89 Total: -1.00 -31.98 390.73 -7.04 -39.02 By element: Atomic # 1 Polarization: 21.62 SS G_CDS: -6.99 Total: 14.63 kcal Atomic # 6 Polarization: 8.40 SS G_CDS: -0.65 Total: 7.75 kcal Atomic # 7 Polarization: -59.97 SS G_CDS: -0.42 Total: -60.39 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: 0.15 Total: -22.53 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.98 -7.04 -39.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275812064.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.519 kcal (2) G-P(sol) polarization free energy of solvation -31.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds