Wall clock time and date at job start Tue Mar 31 2020 20:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46499 * 109.47348 * 2 1 4 4 N 1.28448 * 125.19099 * 274.51741 * 3 2 1 5 5 C 1.30864 * 110.92583 * 180.15720 * 4 3 2 6 6 C 1.39673 * 107.86263 * 359.61405 * 5 4 3 7 7 C 1.36596 * 125.18821 * 94.24739 * 3 2 1 8 8 C 1.47160 * 126.88693 * 0.03260 * 7 3 2 9 9 O 1.21630 * 120.00020 * 354.37504 * 8 7 3 10 10 N 1.34780 * 120.00317 * 174.37320 * 8 7 3 11 11 C 1.46495 * 120.00271 * 185.11082 * 10 8 7 12 12 C 1.53002 * 109.47059 * 179.97438 * 11 10 8 13 13 H 1.08995 * 109.47227 * 65.00323 * 12 11 10 14 14 C 1.53004 * 109.46948 * 185.00435 * 12 11 10 15 15 N 1.46903 * 109.47232 * 304.99988 * 12 11 10 16 16 C 1.46903 * 111.00015 * 298.95691 * 15 12 11 17 17 C 1.46900 * 110.99733 * 174.99782 * 15 12 11 18 18 C 1.50697 * 109.46593 * 190.00111 * 17 15 12 19 19 O 1.21286 * 120.00656 * 0.02562 * 18 17 15 20 20 N 1.34785 * 119.99655 * 180.02562 * 18 17 15 21 21 C 1.37095 * 119.99748 * 180.02562 * 20 18 17 22 22 H 1.07994 * 120.00579 * 359.97438 * 21 20 18 23 23 C 1.38951 * 119.99943 * 179.97438 * 21 20 18 24 24 N 1.31423 * 119.99842 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00460 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47034 * 59.99985 * 25 23 21 27 27 H 1.48496 * 109.47651 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.47000 * 300.00098 * 25 23 21 29 29 H 1.09000 * 109.47719 * 59.99604 * 1 2 3 30 30 H 1.09002 * 109.47594 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46673 * 299.99615 * 1 2 3 32 32 H 1.09006 * 109.46673 * 240.00385 * 2 1 3 33 33 H 1.08996 * 109.47270 * 120.00202 * 2 1 3 34 34 H 1.08002 * 126.06365 * 179.87336 * 5 4 3 35 35 H 1.07995 * 127.31765 * 180.24295 * 6 5 4 36 36 H 0.96998 * 119.99442 * 5.11191 * 10 8 7 37 37 H 1.09000 * 109.46985 * 300.00374 * 11 10 8 38 38 H 1.08999 * 109.46700 * 60.00321 * 11 10 8 39 39 H 1.08996 * 109.47094 * 180.02562 * 14 12 11 40 40 H 1.09007 * 109.46572 * 300.00063 * 14 12 11 41 41 H 1.08995 * 109.47248 * 59.99901 * 14 12 11 42 42 H 1.08992 * 109.47294 * 60.00148 * 16 15 12 43 43 H 1.08998 * 109.46371 * 179.97438 * 16 15 12 44 44 H 1.08999 * 109.46908 * 299.99636 * 16 15 12 45 45 H 1.08998 * 109.47360 * 310.00468 * 17 15 12 46 46 H 1.08998 * 109.46990 * 70.00450 * 17 15 12 47 47 H 0.97001 * 120.00097 * 359.97438 * 20 18 17 48 48 H 0.96991 * 119.99631 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.1872 2.1067 -1.0465 5 6 2.6371 3.2928 -0.7253 6 6 2.7637 3.3410 0.6649 7 6 2.3587 2.0957 1.1133 8 6 2.3061 1.6339 2.5096 9 8 1.8326 0.5449 2.7725 10 7 2.7827 2.4177 3.4971 11 6 2.8336 1.9143 4.8719 12 6 3.4119 2.9937 5.7891 13 1 2.7338 3.8465 5.8193 14 6 3.5815 2.4268 7.2001 15 7 4.7185 3.4251 5.2745 16 6 5.6680 2.3045 5.2431 17 6 5.2511 4.5446 6.0626 18 6 6.4594 5.1177 5.3679 19 8 6.8391 4.6410 4.3193 20 7 7.1180 6.1603 5.9119 21 6 8.2169 6.6821 5.2797 22 1 8.5550 6.2576 4.3460 23 6 8.8956 7.7572 5.8402 24 7 8.4839 8.2741 6.9762 25 14 10.3925 8.4688 4.9785 26 1 10.0032 8.9539 3.6301 27 1 10.9314 9.5999 5.7755 28 1 11.4330 7.4177 4.8451 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5138 0.8899 34 1 2.8656 4.0938 -1.4128 35 1 3.1047 4.1732 1.2627 36 1 3.0919 3.3151 3.2974 37 1 1.8271 1.6573 5.2021 38 1 3.4664 1.0277 4.9108 39 1 3.9930 3.1958 7.8536 40 1 2.6119 2.1067 7.5819 41 1 4.2596 1.5740 7.1699 42 1 5.2801 1.5177 4.5962 43 1 6.6267 2.6515 4.8577 44 1 5.8015 1.9130 6.2515 45 1 4.4876 5.3163 6.1597 46 1 5.5360 4.1887 7.0527 47 1 6.8141 6.5418 6.7504 48 1 8.9579 9.0244 7.3676 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275812064.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:06 Heat of formation + Delta-G solvation = -7.282918 kcal Electronic energy + Delta-G solvation = -29500.004177 eV Core-core repulsion = 25398.215905 eV Total energy + Delta-G solvation = -4101.788272 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.51966 -40.84443 -40.17692 -38.70202 -36.02792 -35.73377 -35.02651 -33.22401 -32.55882 -31.43592 -30.73003 -29.33684 -27.49690 -26.98180 -25.44591 -24.95419 -23.79862 -22.30149 -21.43745 -20.85400 -20.48272 -19.76043 -18.95769 -17.92522 -17.34713 -17.23214 -16.82693 -16.67545 -16.45780 -16.19626 -15.82242 -15.67769 -15.55622 -15.36272 -14.96323 -14.75270 -14.68225 -14.20305 -13.95720 -13.84357 -13.62858 -13.50085 -13.40735 -13.07910 -13.00213 -12.87220 -12.78110 -12.41473 -12.36450 -12.29351 -12.22332 -12.10826 -11.84809 -11.74389 -11.39416 -11.15512 -10.36563 -10.21637 -10.05306 -9.94523 -9.93335 -9.14884 -8.42204 -5.89690 0.22017 1.38585 1.41764 1.43784 1.53774 1.63440 2.13173 2.13515 2.25394 2.31557 2.79177 3.25571 3.47606 3.55638 3.62539 3.74756 4.00892 4.08253 4.09633 4.20271 4.29292 4.30195 4.33478 4.38982 4.57648 4.59309 4.61711 4.64959 4.68787 4.70589 4.77563 4.84226 4.87922 4.89247 5.04613 5.09816 5.22761 5.32117 5.40300 5.45573 5.54707 5.75778 5.91391 6.10175 6.22947 6.44009 6.66657 7.01262 7.10468 7.19025 7.64012 8.20159 8.74922 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013753 B = 0.002575 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.384178 B =10869.215488 C =12487.941048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.106 3.894 3 N -0.263 5.263 4 N -0.297 5.297 5 C -0.009 4.009 6 C -0.184 4.184 7 C -0.057 4.057 8 C 0.589 3.411 9 O -0.571 6.571 10 N -0.691 5.691 11 C 0.135 3.865 12 C 0.070 3.930 13 H 0.107 0.893 14 C -0.182 4.182 15 N -0.522 5.522 16 C 0.026 3.974 17 C 0.058 3.942 18 C 0.443 3.557 19 O -0.612 6.612 20 N -0.577 5.577 21 C -0.327 4.327 22 H 0.078 0.922 23 C -0.014 4.014 24 N -0.921 5.921 25 Si 0.988 3.012 26 H -0.272 1.272 27 H -0.273 1.273 28 H -0.274 1.274 29 H 0.061 0.939 30 H 0.103 0.897 31 H 0.047 0.953 32 H 0.111 0.889 33 H 0.108 0.892 34 H 0.212 0.788 35 H 0.176 0.824 36 H 0.417 0.583 37 H 0.088 0.912 38 H 0.062 0.938 39 H 0.065 0.935 40 H 0.084 0.916 41 H 0.058 0.942 42 H 0.066 0.934 43 H 0.053 0.947 44 H 0.036 0.964 45 H 0.113 0.887 46 H 0.069 0.931 47 H 0.395 0.605 48 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.411 -12.128 -4.231 20.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.013 4.013 3 N -0.052 5.052 4 N -0.130 5.130 5 C -0.184 4.184 6 C -0.213 4.213 7 C -0.186 4.186 8 C 0.375 3.625 9 O -0.452 6.452 10 N -0.341 5.341 11 C 0.011 3.989 12 C -0.039 4.039 13 H 0.125 0.875 14 C -0.241 4.241 15 N -0.246 5.246 16 C -0.122 4.122 17 C -0.073 4.073 18 C 0.231 3.769 19 O -0.497 6.497 20 N -0.215 5.215 21 C -0.457 4.457 22 H 0.096 0.904 23 C -0.213 4.213 24 N -0.563 5.563 25 Si 0.812 3.188 26 H -0.197 1.197 27 H -0.197 1.197 28 H -0.199 1.199 29 H 0.080 0.920 30 H 0.122 0.878 31 H 0.066 0.934 32 H 0.129 0.871 33 H 0.126 0.874 34 H 0.229 0.771 35 H 0.193 0.807 36 H 0.254 0.746 37 H 0.106 0.894 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.103 0.897 41 H 0.077 0.923 42 H 0.085 0.915 43 H 0.072 0.928 44 H 0.054 0.946 45 H 0.131 0.869 46 H 0.086 0.914 47 H 0.229 0.771 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -16.827 -13.712 -5.992 22.519 hybrid contribution 1.418 1.356 1.437 2.432 sum -15.409 -12.356 -4.555 20.270 Atomic orbital electron populations 1.22006 0.92458 1.04597 1.01993 1.22342 0.97069 0.75900 1.06005 1.46073 1.44500 1.12865 1.01736 1.73159 1.19654 1.05853 1.14307 1.24098 1.03306 0.95434 0.95594 1.22621 1.05476 0.97020 0.96178 1.21548 1.12036 0.94979 0.90007 1.16971 0.77905 0.84127 0.83498 1.90733 1.47674 1.22501 1.84330 1.45546 1.62560 1.18633 1.07386 1.21517 1.01511 0.96362 0.79473 1.22112 0.90618 0.98172 0.92973 0.87507 1.22366 1.03817 1.01910 0.96034 1.61748 1.03173 1.07310 1.52330 1.22395 0.96913 0.93072 0.99848 1.21739 0.95453 0.95150 0.94945 1.20819 0.86860 0.82296 0.86972 1.90479 1.70428 1.62887 1.25941 1.41940 1.26571 1.29553 1.23430 1.19571 1.05755 1.13689 1.06670 0.90380 1.25962 1.01756 0.96812 0.96788 1.69662 1.42217 1.25612 1.18788 0.85058 0.77804 0.77789 0.78132 1.19723 1.19743 1.19949 0.92035 0.87844 0.93378 0.87104 0.87426 0.77102 0.80712 0.74610 0.89430 0.91928 0.91574 0.89700 0.92288 0.91536 0.92812 0.94565 0.86860 0.91351 0.77106 0.91473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 10.24 71.98 0.74 -1.77 16 2 C 0.11 2.08 6.58 86.38 0.57 2.65 16 3 N -0.26 -6.58 3.35 -334.69 -1.12 -7.70 16 4 N -0.30 -7.57 11.90 -57.14 -0.68 -8.25 16 5 C -0.01 -0.21 12.03 85.18 1.02 0.82 16 6 C -0.18 -4.31 10.50 22.66 0.24 -4.07 16 7 C -0.06 -1.48 6.96 40.79 0.28 -1.20 16 8 C 0.59 15.29 7.78 86.59 0.67 15.97 16 9 O -0.57 -16.62 14.68 -4.13 -0.06 -16.68 16 10 N -0.69 -15.47 5.38 -466.64 -2.51 -17.98 16 11 C 0.13 2.62 4.69 86.38 0.41 3.03 16 12 C 0.07 1.29 2.50 44.92 0.11 1.40 16 13 H 0.11 1.70 8.03 -2.39 -0.02 1.68 16 14 C -0.18 -2.83 8.50 71.98 0.61 -2.22 16 15 N -0.52 -13.95 3.93 -901.62 -3.54 -17.50 16 16 C 0.03 0.75 8.46 127.69 1.08 1.83 16 17 C 0.06 1.75 4.89 85.56 0.42 2.16 16 18 C 0.44 19.52 7.47 87.65 0.66 20.18 16 19 O -0.61 -31.54 13.91 -3.05 -0.04 -31.58 16 20 N -0.58 -28.19 5.29 -306.99 -1.62 -29.81 16 21 C -0.33 -17.99 9.68 84.04 0.81 -17.18 16 22 H 0.08 4.59 7.16 -2.91 -0.02 4.57 16 23 C -0.01 -0.72 5.50 84.92 0.47 -0.25 16 24 N -0.92 -48.73 13.05 21.66 0.28 -48.45 16 25 Si 0.99 42.31 29.55 68.60 2.03 44.34 16 26 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 27 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 28 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 29 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.10 1.16 8.14 -2.39 -0.02 1.15 16 31 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 32 H 0.11 1.77 8.14 -2.38 -0.02 1.75 16 33 H 0.11 2.31 6.20 -2.39 -0.01 2.30 16 34 H 0.21 3.35 8.06 -2.91 -0.02 3.33 16 35 H 0.18 3.53 7.59 -2.91 -0.02 3.50 16 36 H 0.42 9.28 7.17 -92.71 -0.67 8.62 16 37 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.06 1.34 6.70 -2.39 -0.02 1.33 16 39 H 0.07 1.06 6.75 -2.39 -0.02 1.05 16 40 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 41 H 0.06 0.99 6.39 -2.39 -0.02 0.98 16 42 H 0.07 1.83 6.44 -2.39 -0.02 1.81 16 43 H 0.05 2.06 5.82 -2.39 -0.01 2.05 16 44 H 0.04 0.93 6.28 -2.39 -0.01 0.91 16 45 H 0.11 2.88 8.00 -2.39 -0.02 2.87 16 46 H 0.07 1.86 6.94 -2.39 -0.02 1.84 16 47 H 0.40 18.36 7.90 -92.71 -0.73 17.63 16 48 H 0.28 13.77 8.31 -92.72 -0.77 13.00 16 Total: -1.00 -70.06 390.73 0.43 -69.63 By element: Atomic # 1 Polarization: 43.02 SS G_CDS: -0.39 Total: 42.63 kcal Atomic # 6 Polarization: 13.26 SS G_CDS: 8.09 Total: 21.35 kcal Atomic # 7 Polarization: -120.50 SS G_CDS: -9.19 Total: -129.69 kcal Atomic # 8 Polarization: -48.16 SS G_CDS: -0.10 Total: -48.26 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.34 kcal Total: -70.06 0.43 -69.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275812064.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.349 kcal (2) G-P(sol) polarization free energy of solvation -70.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds