Wall clock time and date at job start Tue Mar 31 2020 20:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46504 * 109.46818 * 2 1 4 4 N 1.28439 * 125.19370 * 263.07831 * 3 2 1 5 5 C 1.30864 * 110.93030 * 180.16224 * 4 3 2 6 6 C 1.39674 * 107.85876 * 359.61023 * 5 4 3 7 7 C 1.36599 * 125.18638 * 82.80555 * 3 2 1 8 8 C 1.47157 * 126.88952 * 0.02562 * 7 3 2 9 9 O 1.21631 * 120.00511 * 173.80354 * 8 7 3 10 10 N 1.34781 * 119.99837 * 353.80668 * 8 7 3 11 11 C 1.46502 * 120.00085 * 184.77814 * 10 8 7 12 12 C 1.52999 * 109.46894 * 174.99092 * 11 10 8 13 13 H 1.09003 * 109.46806 * 183.90512 * 12 11 10 14 14 C 1.53001 * 109.47195 * 63.91229 * 12 11 10 15 15 N 1.46895 * 109.47460 * 303.90923 * 12 11 10 16 16 C 1.46901 * 110.99619 * 308.78098 * 15 12 11 17 17 C 1.46896 * 111.00250 * 184.82691 * 15 12 11 18 18 C 1.50695 * 109.47245 * 189.99767 * 17 15 12 19 19 O 1.21302 * 120.00122 * 359.97438 * 18 17 15 20 20 N 1.34777 * 120.00347 * 180.02562 * 18 17 15 21 21 C 1.37093 * 120.00347 * 180.02562 * 20 18 17 22 22 H 1.08006 * 119.99969 * 359.97438 * 21 20 18 23 23 C 1.38957 * 120.00253 * 179.97438 * 21 20 18 24 24 N 1.31407 * 120.00131 * 179.97438 * 23 21 20 25 25 Si 1.86795 * 119.99566 * 359.97438 * 23 21 20 26 26 H 1.48498 * 109.47351 * 90.00130 * 25 23 21 27 27 H 1.48500 * 109.47114 * 210.00007 * 25 23 21 28 28 H 1.48498 * 109.47665 * 329.99893 * 25 23 21 29 29 H 1.09001 * 109.47167 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47169 * 299.99465 * 1 2 3 31 31 H 1.09003 * 109.47467 * 59.99895 * 1 2 3 32 32 H 1.08998 * 109.47169 * 240.00535 * 2 1 3 33 33 H 1.08993 * 109.46791 * 119.99773 * 2 1 3 34 34 H 1.08001 * 126.06980 * 179.87019 * 5 4 3 35 35 H 1.08005 * 127.31792 * 180.24899 * 6 5 4 36 36 H 0.97006 * 119.99935 * 4.77171 * 10 8 7 37 37 H 1.09002 * 109.46577 * 294.98633 * 11 10 8 38 38 H 1.08998 * 109.47460 * 54.98911 * 11 10 8 39 39 H 1.09003 * 109.46658 * 299.99374 * 14 12 11 40 40 H 1.09002 * 109.47691 * 59.99342 * 14 12 11 41 41 H 1.08995 * 109.47241 * 179.97438 * 14 12 11 42 42 H 1.08999 * 109.47197 * 65.53575 * 16 15 12 43 43 H 1.09001 * 109.47022 * 185.53255 * 16 15 12 44 44 H 1.09004 * 109.47473 * 305.53377 * 16 15 12 45 45 H 1.08998 * 109.47209 * 309.99892 * 17 15 12 46 46 H 1.09003 * 109.47026 * 69.99543 * 17 15 12 47 47 H 0.97000 * 119.99934 * 359.97438 * 20 18 17 48 48 H 0.96997 * 120.00053 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.3843 2.0371 -1.0420 5 6 2.7736 3.2446 -0.7215 6 6 2.6383 3.3854 0.6615 7 6 2.1488 2.1700 1.1076 8 6 1.8331 1.8013 2.4968 9 8 2.1026 2.5642 3.4049 10 7 1.2451 0.6180 2.7629 11 6 0.8356 0.2950 4.1320 12 6 0.0882 -1.0400 4.1391 13 1 -0.2767 -1.2467 5.1452 14 6 1.0365 -2.1578 3.7009 15 7 -1.0482 -0.9700 3.2109 16 6 -1.8702 0.2187 3.4739 17 6 -1.8572 -2.1944 3.2758 18 6 -2.8588 -2.1949 2.1499 19 8 -2.8955 -1.2663 1.3703 20 7 -3.7146 -3.2266 2.0097 21 6 -4.6255 -3.2274 0.9851 22 1 -4.6576 -2.4010 0.2904 23 6 -5.5075 -4.2914 0.8402 24 7 -6.3809 -4.2918 -0.1416 25 14 -5.4514 -5.7210 2.0412 26 1 -6.3614 -5.4452 3.1819 27 1 -5.8837 -6.9634 1.3523 28 1 -4.0646 -5.8909 2.5442 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8934 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.1316 3.9999 -1.4055 35 1 2.8666 4.2575 1.2564 36 1 1.0930 -0.0197 2.0479 37 1 1.7183 0.2206 4.7672 38 1 0.1808 1.0800 4.5102 39 1 1.4014 -1.9511 2.6948 40 1 1.8798 -2.2098 4.3897 41 1 0.5042 -3.1089 3.7065 42 1 -1.2915 1.1163 3.2558 43 1 -2.7566 0.1950 2.8399 44 1 -2.1727 0.2270 4.5211 45 1 -1.2072 -3.0646 3.1843 46 1 -2.3829 -2.2323 4.2299 47 1 -3.6856 -3.9690 2.6333 48 1 -6.9963 -5.0347 -0.2429 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275812065.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:10 Heat of formation + Delta-G solvation = 37.521400 kcal Electronic energy + Delta-G solvation = -30776.093487 eV Core-core repulsion = 26676.248076 eV Total energy + Delta-G solvation = -4099.845411 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.67535 -39.91895 -38.87978 -37.45124 -35.40422 -34.20091 -33.68893 -31.75693 -31.54305 -30.69451 -29.85201 -28.71682 -26.51831 -25.02982 -24.23677 -23.74630 -22.73613 -21.62026 -20.42472 -20.02170 -19.40430 -18.38918 -18.03663 -16.80660 -16.30055 -15.98706 -15.84530 -15.55891 -15.19929 -15.06562 -15.00375 -14.55382 -14.19235 -14.09658 -13.88674 -13.41586 -13.24032 -13.17728 -13.09963 -12.72660 -12.58558 -12.52801 -12.31759 -11.95487 -11.91028 -11.77302 -11.57703 -11.42095 -11.35475 -11.09114 -10.99807 -10.79395 -10.66403 -10.21843 -10.04929 -9.60689 -9.38156 -9.22249 -9.04429 -8.67812 -8.26248 -8.13172 -6.38204 -3.89858 1.16707 2.30519 2.54160 2.92654 2.95259 3.00211 3.09395 3.14543 3.64453 3.73090 4.03279 4.16085 4.43839 4.52417 4.65128 4.77535 4.82649 4.88403 4.97152 5.06715 5.13305 5.18267 5.28480 5.38750 5.45192 5.49270 5.51154 5.59892 5.69554 5.70709 5.72309 5.80144 5.83856 5.84280 5.87373 6.00909 6.17974 6.36850 6.40202 6.43979 6.61082 6.99299 7.11979 7.30051 7.50486 7.88414 8.02544 8.06827 8.52092 8.87873 9.34921 9.74725 10.74760 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.015929 B = 0.003086 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.388557 B = 9071.333510 C =10128.709878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.101 3.899 3 N -0.269 5.269 4 N -0.272 5.272 5 C -0.010 4.010 6 C -0.161 4.161 7 C -0.044 4.044 8 C 0.589 3.411 9 O -0.531 6.531 10 N -0.719 5.719 11 C 0.124 3.876 12 C 0.061 3.939 13 H 0.060 0.940 14 C -0.148 4.148 15 N -0.513 5.513 16 C 0.018 3.982 17 C 0.038 3.962 18 C 0.451 3.549 19 O -0.557 6.557 20 N -0.590 5.590 21 C -0.305 4.305 22 H 0.120 0.880 23 C 0.042 3.958 24 N -0.880 5.880 25 Si 0.879 3.121 26 H -0.272 1.272 27 H -0.277 1.277 28 H -0.270 1.270 29 H 0.097 0.903 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.111 0.889 33 H 0.093 0.907 34 H 0.187 0.813 35 H 0.162 0.838 36 H 0.410 0.590 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.058 0.942 40 H 0.063 0.937 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.097 0.903 44 H 0.017 0.983 45 H 0.092 0.908 46 H 0.050 0.950 47 H 0.369 0.631 48 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.335 5.407 7.439 19.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.019 4.019 3 N -0.059 5.059 4 N -0.105 5.105 5 C -0.186 4.186 6 C -0.190 4.190 7 C -0.171 4.171 8 C 0.375 3.625 9 O -0.407 6.407 10 N -0.378 5.378 11 C 0.001 3.999 12 C -0.047 4.047 13 H 0.078 0.922 14 C -0.206 4.206 15 N -0.238 5.238 16 C -0.130 4.130 17 C -0.094 4.094 18 C 0.237 3.763 19 O -0.439 6.439 20 N -0.229 5.229 21 C -0.433 4.433 22 H 0.138 0.862 23 C -0.161 4.161 24 N -0.520 5.520 25 Si 0.705 3.295 26 H -0.197 1.197 27 H -0.202 1.202 28 H -0.195 1.195 29 H 0.116 0.884 30 H 0.098 0.902 31 H 0.085 0.915 32 H 0.129 0.871 33 H 0.111 0.889 34 H 0.204 0.796 35 H 0.179 0.821 36 H 0.254 0.746 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.115 0.885 44 H 0.036 0.964 45 H 0.110 0.890 46 H 0.068 0.932 47 H 0.202 0.798 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 17.279 5.612 6.094 19.162 hybrid contribution -0.506 -1.161 2.027 2.390 sum 16.772 4.452 8.122 19.160 Atomic orbital electron populations 1.22270 0.90315 1.05892 1.04321 1.22370 0.97946 0.76699 1.04847 1.46087 1.44618 1.12239 1.02991 1.73161 1.15798 1.07528 1.13965 1.23600 1.05426 0.94566 0.95009 1.22155 1.04362 0.97283 0.95198 1.21722 1.12059 0.94412 0.88903 1.16999 0.77739 0.81726 0.86068 1.90813 1.53626 1.51185 1.45087 1.46498 1.60842 1.18482 1.12000 1.21494 0.98851 0.96314 0.83290 1.22011 0.92361 0.94763 0.95614 0.92202 1.21918 0.98788 0.98132 1.01756 1.61670 1.09269 1.02491 1.50380 1.22600 0.99309 0.92012 0.99077 1.21981 0.95928 0.93677 0.97777 1.19588 0.84042 0.84599 0.88064 1.90535 1.72156 1.35581 1.45598 1.42221 1.32666 1.19504 1.28542 1.19404 1.09811 1.07862 1.06265 0.86235 1.25040 0.96171 0.97894 0.97002 1.69613 1.19920 1.32308 1.30127 0.86691 0.78432 0.82897 0.81445 1.19701 1.20189 1.19527 0.88390 0.90205 0.91477 0.87111 0.88914 0.79648 0.82052 0.74634 0.90790 0.90671 0.92281 0.91819 0.91593 0.91839 0.88462 0.96404 0.88984 0.93249 0.79806 0.91569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.21 9.58 37.16 0.36 -1.85 16 2 C 0.10 1.08 6.20 -4.04 -0.03 1.06 16 3 N -0.27 -3.41 3.35 -57.14 -0.19 -3.60 16 4 N -0.27 -3.58 11.90 30.59 0.36 -3.22 16 5 C -0.01 -0.11 12.03 -17.43 -0.21 -0.32 16 6 C -0.16 -1.95 10.85 -38.98 -0.42 -2.37 16 7 C -0.04 -0.58 6.95 -82.06 -0.57 -1.16 16 8 C 0.59 8.10 7.79 -12.64 -0.10 8.00 16 9 O -0.53 -8.59 16.93 5.25 0.09 -8.50 16 10 N -0.72 -8.30 4.31 -61.47 -0.27 -8.56 16 11 C 0.12 1.29 4.55 -4.04 -0.02 1.27 16 12 C 0.06 0.59 2.33 -67.71 -0.16 0.44 16 13 H 0.06 0.53 8.13 -51.93 -0.42 0.10 16 14 C -0.15 -1.23 8.97 37.16 0.33 -0.89 16 15 N -0.51 -6.50 3.93 -236.34 -0.93 -7.43 16 16 C 0.02 0.25 8.43 60.07 0.51 0.75 16 17 C 0.04 0.53 5.31 -4.98 -0.03 0.50 16 18 C 0.45 8.96 7.42 -10.99 -0.08 8.88 16 19 O -0.56 -12.82 13.96 5.54 0.08 -12.74 16 20 N -0.59 -12.84 5.09 -10.96 -0.06 -12.89 16 21 C -0.30 -8.09 10.16 -14.93 -0.15 -8.25 16 22 H 0.12 3.65 7.39 -52.48 -0.39 3.27 16 23 C 0.04 1.10 5.50 -17.47 -0.10 1.01 16 24 N -0.88 -24.86 13.96 55.50 0.77 -24.08 16 25 Si 0.88 18.49 27.74 -169.99 -4.71 13.78 16 26 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 27 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 28 H -0.27 -5.10 6.52 56.52 0.37 -4.73 16 29 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 30 H 0.08 1.15 6.94 -51.93 -0.36 0.79 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.09 0.85 5.78 -51.93 -0.30 0.55 16 34 H 0.19 1.43 8.06 -52.49 -0.42 1.01 16 35 H 0.16 1.70 8.06 -52.48 -0.42 1.27 16 36 H 0.41 4.51 1.70 -40.82 -0.07 4.44 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.08 0.85 6.68 -51.93 -0.35 0.50 16 39 H 0.06 0.50 6.86 -51.93 -0.36 0.15 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.07 0.54 6.33 -51.93 -0.33 0.21 16 42 H 0.06 0.87 6.47 -51.93 -0.34 0.53 16 43 H 0.10 1.70 5.79 -51.93 -0.30 1.40 16 44 H 0.02 0.22 8.13 -51.93 -0.42 -0.20 16 45 H 0.09 1.10 6.03 -51.93 -0.31 0.79 16 46 H 0.05 0.63 8.12 -51.93 -0.42 0.21 16 47 H 0.37 7.10 5.76 -40.82 -0.24 6.86 16 48 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 383.22 15.07 5.78 5.78 Total: -1.00 -32.38 383.22 -6.47 -38.84 By element: Atomic # 1 Polarization: 22.29 SS G_CDS: -6.73 Total: 15.57 kcal Atomic # 6 Polarization: 7.73 SS G_CDS: -0.66 Total: 7.06 kcal Atomic # 7 Polarization: -59.48 SS G_CDS: -0.30 Total: -59.78 kcal Atomic # 8 Polarization: -21.41 SS G_CDS: 0.17 Total: -21.24 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -4.71 Total: 13.78 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.38 -6.47 -38.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275812065.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.365 kcal (2) G-P(sol) polarization free energy of solvation -32.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds