Wall clock time and date at job start Tue Mar 31 2020 20:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46504 * 109.46818 * 2 1 4 4 N 1.28439 * 125.19370 * 263.07831 * 3 2 1 5 5 C 1.30864 * 110.93030 * 180.16224 * 4 3 2 6 6 C 1.39674 * 107.85876 * 359.61023 * 5 4 3 7 7 C 1.36599 * 125.18638 * 82.80555 * 3 2 1 8 8 C 1.47157 * 126.88952 * 0.02562 * 7 3 2 9 9 O 1.21631 * 120.00511 * 173.80354 * 8 7 3 10 10 N 1.34781 * 119.99837 * 353.80668 * 8 7 3 11 11 C 1.46502 * 120.00085 * 184.77814 * 10 8 7 12 12 C 1.52999 * 109.46894 * 174.99092 * 11 10 8 13 13 H 1.09003 * 109.46806 * 183.90512 * 12 11 10 14 14 C 1.53001 * 109.47195 * 63.91229 * 12 11 10 15 15 N 1.46895 * 109.47460 * 303.90923 * 12 11 10 16 16 C 1.46901 * 110.99619 * 308.78098 * 15 12 11 17 17 C 1.46896 * 111.00250 * 184.82691 * 15 12 11 18 18 C 1.50695 * 109.47245 * 189.99767 * 17 15 12 19 19 O 1.21302 * 120.00122 * 359.97438 * 18 17 15 20 20 N 1.34777 * 120.00347 * 180.02562 * 18 17 15 21 21 C 1.37093 * 120.00347 * 180.02562 * 20 18 17 22 22 H 1.08006 * 119.99969 * 359.97438 * 21 20 18 23 23 C 1.38957 * 120.00253 * 179.97438 * 21 20 18 24 24 N 1.31407 * 120.00131 * 179.97438 * 23 21 20 25 25 Si 1.86795 * 119.99566 * 359.97438 * 23 21 20 26 26 H 1.48498 * 109.47351 * 90.00130 * 25 23 21 27 27 H 1.48500 * 109.47114 * 210.00007 * 25 23 21 28 28 H 1.48498 * 109.47665 * 329.99893 * 25 23 21 29 29 H 1.09001 * 109.47167 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47169 * 299.99465 * 1 2 3 31 31 H 1.09003 * 109.47467 * 59.99895 * 1 2 3 32 32 H 1.08998 * 109.47169 * 240.00535 * 2 1 3 33 33 H 1.08993 * 109.46791 * 119.99773 * 2 1 3 34 34 H 1.08001 * 126.06980 * 179.87019 * 5 4 3 35 35 H 1.08005 * 127.31792 * 180.24899 * 6 5 4 36 36 H 0.97006 * 119.99935 * 4.77171 * 10 8 7 37 37 H 1.09002 * 109.46577 * 294.98633 * 11 10 8 38 38 H 1.08998 * 109.47460 * 54.98911 * 11 10 8 39 39 H 1.09003 * 109.46658 * 299.99374 * 14 12 11 40 40 H 1.09002 * 109.47691 * 59.99342 * 14 12 11 41 41 H 1.08995 * 109.47241 * 179.97438 * 14 12 11 42 42 H 1.08999 * 109.47197 * 65.53575 * 16 15 12 43 43 H 1.09001 * 109.47022 * 185.53255 * 16 15 12 44 44 H 1.09004 * 109.47473 * 305.53377 * 16 15 12 45 45 H 1.08998 * 109.47209 * 309.99892 * 17 15 12 46 46 H 1.09003 * 109.47026 * 69.99543 * 17 15 12 47 47 H 0.97000 * 119.99934 * 359.97438 * 20 18 17 48 48 H 0.96997 * 120.00053 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.3843 2.0371 -1.0420 5 6 2.7736 3.2446 -0.7215 6 6 2.6383 3.3854 0.6615 7 6 2.1488 2.1700 1.1076 8 6 1.8331 1.8013 2.4968 9 8 2.1026 2.5642 3.4049 10 7 1.2451 0.6180 2.7629 11 6 0.8356 0.2950 4.1320 12 6 0.0882 -1.0400 4.1391 13 1 -0.2767 -1.2467 5.1452 14 6 1.0365 -2.1578 3.7009 15 7 -1.0482 -0.9700 3.2109 16 6 -1.8702 0.2187 3.4739 17 6 -1.8572 -2.1944 3.2758 18 6 -2.8588 -2.1949 2.1499 19 8 -2.8955 -1.2663 1.3703 20 7 -3.7146 -3.2266 2.0097 21 6 -4.6255 -3.2274 0.9851 22 1 -4.6576 -2.4010 0.2904 23 6 -5.5075 -4.2914 0.8402 24 7 -6.3809 -4.2918 -0.1416 25 14 -5.4514 -5.7210 2.0412 26 1 -6.3614 -5.4452 3.1819 27 1 -5.8837 -6.9634 1.3523 28 1 -4.0646 -5.8909 2.5442 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8934 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.1316 3.9999 -1.4055 35 1 2.8666 4.2575 1.2564 36 1 1.0930 -0.0197 2.0479 37 1 1.7183 0.2206 4.7672 38 1 0.1808 1.0800 4.5102 39 1 1.4014 -1.9511 2.6948 40 1 1.8798 -2.2098 4.3897 41 1 0.5042 -3.1089 3.7065 42 1 -1.2915 1.1163 3.2558 43 1 -2.7566 0.1950 2.8399 44 1 -2.1727 0.2270 4.5211 45 1 -1.2072 -3.0646 3.1843 46 1 -2.3829 -2.2323 4.2299 47 1 -3.6856 -3.9690 2.6333 48 1 -6.9963 -5.0347 -0.2429 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275812065.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:09 Heat of formation + Delta-G solvation = 12.717330 kcal Electronic energy + Delta-G solvation = -30777.169073 eV Core-core repulsion = 26676.248076 eV Total energy + Delta-G solvation = -4100.920997 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.62092 -40.97618 -40.27300 -38.68942 -36.43883 -35.88874 -34.82341 -33.68332 -32.50331 -31.59672 -30.84046 -29.90968 -27.64462 -26.39752 -25.26884 -25.00274 -23.75125 -22.56439 -21.44653 -21.18298 -20.85756 -20.07528 -19.04071 -17.95948 -17.29487 -17.23031 -16.87160 -16.77515 -16.63758 -16.14333 -16.10052 -15.74148 -15.38964 -15.29058 -14.94173 -14.83630 -14.43440 -14.26610 -14.15406 -14.10530 -13.84612 -13.59941 -13.40936 -13.16191 -13.03256 -12.93585 -12.72195 -12.41151 -12.38515 -12.34398 -12.25843 -11.97362 -11.95701 -11.67487 -11.39862 -11.28503 -10.39887 -10.25967 -10.16429 -10.15033 -9.98740 -9.22733 -8.36741 -5.96022 0.16046 1.31578 1.37328 1.38716 1.45806 1.61995 1.97054 2.05472 2.14518 2.25816 2.61263 3.20642 3.25984 3.29904 3.54857 3.69212 3.84068 3.97137 4.01460 4.10003 4.14045 4.27531 4.34369 4.41222 4.46414 4.51538 4.56252 4.61956 4.68794 4.70486 4.76280 4.78088 4.90750 4.94236 5.01246 5.17481 5.26578 5.29229 5.36113 5.51363 5.57921 5.68641 5.91736 6.03727 6.16757 6.32232 6.65534 6.90975 6.96011 7.04625 7.48187 8.06081 8.80965 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.015929 B = 0.003086 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.388557 B = 9071.333510 C =10128.709878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.104 3.896 3 N -0.273 5.273 4 N -0.294 5.294 5 C -0.005 4.005 6 C -0.167 4.167 7 C -0.064 4.064 8 C 0.588 3.412 9 O -0.561 6.561 10 N -0.710 5.710 11 C 0.121 3.879 12 C 0.067 3.933 13 H 0.083 0.917 14 C -0.149 4.149 15 N -0.524 5.524 16 C 0.028 3.972 17 C 0.050 3.950 18 C 0.454 3.546 19 O -0.593 6.593 20 N -0.596 5.596 21 C -0.318 4.318 22 H 0.057 0.943 23 C -0.018 4.018 24 N -0.939 5.939 25 Si 0.961 3.039 26 H -0.262 1.262 27 H -0.281 1.281 28 H -0.227 1.227 29 H 0.087 0.913 30 H 0.063 0.937 31 H 0.048 0.952 32 H 0.127 0.873 33 H 0.112 0.888 34 H 0.220 0.780 35 H 0.174 0.826 36 H 0.412 0.588 37 H 0.090 0.910 38 H 0.065 0.935 39 H 0.053 0.947 40 H 0.084 0.916 41 H 0.073 0.927 42 H 0.059 0.941 43 H 0.055 0.945 44 H 0.036 0.964 45 H 0.126 0.874 46 H 0.076 0.924 47 H 0.387 0.613 48 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.775 3.674 10.257 22.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.015 4.015 3 N -0.063 5.063 4 N -0.127 5.127 5 C -0.180 4.180 6 C -0.196 4.196 7 C -0.191 4.191 8 C 0.374 3.626 9 O -0.440 6.440 10 N -0.368 5.368 11 C -0.002 4.002 12 C -0.041 4.041 13 H 0.101 0.899 14 C -0.207 4.207 15 N -0.249 5.249 16 C -0.120 4.120 17 C -0.081 4.081 18 C 0.242 3.758 19 O -0.476 6.476 20 N -0.239 5.239 21 C -0.447 4.447 22 H 0.075 0.925 23 C -0.216 4.216 24 N -0.580 5.580 25 Si 0.782 3.218 26 H -0.187 1.187 27 H -0.206 1.206 28 H -0.150 1.150 29 H 0.105 0.895 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.145 0.855 33 H 0.129 0.871 34 H 0.236 0.764 35 H 0.192 0.808 36 H 0.256 0.744 37 H 0.108 0.892 38 H 0.083 0.917 39 H 0.072 0.928 40 H 0.103 0.897 41 H 0.092 0.908 42 H 0.078 0.922 43 H 0.074 0.926 44 H 0.054 0.946 45 H 0.143 0.857 46 H 0.094 0.906 47 H 0.222 0.778 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 19.748 3.872 8.929 22.016 hybrid contribution -1.222 -0.417 1.080 1.683 sum 18.526 3.455 10.009 21.338 Atomic orbital electron populations 1.22069 0.92282 1.04533 1.02599 1.22410 0.96005 0.76470 1.06605 1.46164 1.44840 1.12626 1.02717 1.73154 1.16643 1.08492 1.14400 1.24185 1.04098 0.94488 0.95253 1.22479 1.03886 0.97378 0.95849 1.21901 1.12907 0.95249 0.89056 1.17087 0.77622 0.81953 0.85945 1.90789 1.55197 1.52126 1.45847 1.46501 1.59774 1.17768 1.12768 1.21641 0.99426 0.96491 0.82660 1.22094 0.91073 0.94885 0.96017 0.89884 1.21963 0.99138 0.97543 1.02019 1.61591 1.09586 1.01477 1.52273 1.22371 0.97845 0.92718 0.99105 1.21909 0.95117 0.95400 0.95695 1.20834 0.83601 0.82877 0.88489 1.90542 1.72893 1.36804 1.47337 1.42053 1.32673 1.21034 1.28126 1.18959 1.11988 1.06680 1.07102 0.92503 1.26063 0.95013 1.01300 0.99212 1.69807 1.21396 1.33827 1.33016 0.85415 0.80860 0.77264 0.78284 1.18692 1.20607 1.14995 0.89476 0.91811 0.93273 0.85460 0.87067 0.76390 0.80832 0.74355 0.89195 0.91684 0.92841 0.89737 0.90796 0.92186 0.92604 0.94570 0.85654 0.90582 0.77773 0.91433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.19 9.58 71.98 0.69 -3.50 16 2 C 0.10 2.17 6.20 86.38 0.54 2.70 16 3 N -0.27 -6.77 3.35 -334.69 -1.12 -7.89 16 4 N -0.29 -7.52 11.90 -57.14 -0.68 -8.20 16 5 C 0.00 -0.10 12.03 85.18 1.02 0.93 16 6 C -0.17 -3.90 10.85 22.66 0.25 -3.65 16 7 C -0.06 -1.68 6.95 40.79 0.28 -1.39 16 8 C 0.59 15.80 7.79 86.58 0.67 16.47 16 9 O -0.56 -17.87 16.93 -4.13 -0.07 -17.94 16 10 N -0.71 -15.45 4.31 -466.62 -2.01 -17.46 16 11 C 0.12 2.22 4.55 86.38 0.39 2.61 16 12 C 0.07 1.05 2.33 44.92 0.10 1.16 16 13 H 0.08 1.02 8.13 -2.39 -0.02 1.00 16 14 C -0.15 -1.81 8.97 71.98 0.65 -1.16 16 15 N -0.52 -12.11 3.93 -901.63 -3.55 -15.66 16 16 C 0.03 0.75 8.43 127.69 1.08 1.83 16 17 C 0.05 1.22 5.31 85.56 0.45 1.68 16 18 C 0.45 17.81 7.42 87.66 0.65 18.46 16 19 O -0.59 -28.39 13.96 -3.10 -0.04 -28.43 16 20 N -0.60 -25.57 5.09 -306.97 -1.56 -27.13 16 21 C -0.32 -17.57 10.16 84.04 0.85 -16.71 16 22 H 0.06 3.77 7.39 -2.91 -0.02 3.75 16 23 C -0.02 -0.96 5.50 84.93 0.47 -0.49 16 24 N -0.94 -55.45 13.96 21.66 0.30 -55.15 16 25 Si 0.96 37.18 27.74 68.60 1.90 39.08 16 26 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 27 H -0.28 -11.00 7.11 99.48 0.71 -10.30 16 28 H -0.23 -7.13 6.52 99.48 0.65 -6.48 16 29 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 30 H 0.06 1.90 6.94 -2.39 -0.02 1.88 16 31 H 0.05 1.45 8.14 -2.39 -0.02 1.44 16 32 H 0.13 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.11 1.87 5.78 -2.39 -0.01 1.86 16 34 H 0.22 2.87 8.06 -2.91 -0.02 2.84 16 35 H 0.17 3.49 8.06 -2.91 -0.02 3.46 16 36 H 0.41 8.53 1.70 -92.70 -0.16 8.37 16 37 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.06 1.35 6.68 -2.39 -0.02 1.34 16 39 H 0.05 0.72 6.86 -2.39 -0.02 0.70 16 40 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.07 0.81 6.33 -2.39 -0.02 0.80 16 42 H 0.06 1.64 6.47 -2.39 -0.02 1.63 16 43 H 0.06 2.00 5.79 -2.39 -0.01 1.99 16 44 H 0.04 0.83 8.13 -2.38 -0.02 0.81 16 45 H 0.13 2.37 6.03 -2.39 -0.01 2.35 16 46 H 0.08 1.57 8.12 -2.39 -0.02 1.55 16 47 H 0.39 13.69 5.76 -92.71 -0.53 13.16 16 48 H 0.28 15.02 8.31 -92.71 -0.77 14.25 16 Total: -1.00 -77.24 383.22 1.52 -75.71 By element: Atomic # 1 Polarization: 43.90 SS G_CDS: 0.26 Total: 44.16 kcal Atomic # 6 Polarization: 10.82 SS G_CDS: 8.10 Total: 18.92 kcal Atomic # 7 Polarization: -122.87 SS G_CDS: -8.62 Total: -131.49 kcal Atomic # 8 Polarization: -46.26 SS G_CDS: -0.11 Total: -46.38 kcal Atomic # 14 Polarization: 37.18 SS G_CDS: 1.90 Total: 39.08 kcal Total: -77.24 1.52 -75.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275812065.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.431 kcal (2) G-P(sol) polarization free energy of solvation -77.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds