Wall clock time and date at job start Tue Mar 31 2020 20:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47001 * 2 1 4 4 C 1.52994 * 109.47354 * 239.99571 * 2 1 3 5 5 N 1.46496 * 109.47253 * 185.00097 * 4 2 1 6 6 C 1.46505 * 119.99896 * 270.00133 * 5 4 2 7 7 C 1.34777 * 120.00271 * 89.99668 * 5 4 2 8 8 O 1.21278 * 119.99854 * 0.02562 * 7 5 4 9 9 C 1.50703 * 120.00161 * 180.02562 * 7 5 4 10 10 C 1.53000 * 109.46912 * 180.02562 * 9 7 5 11 11 N 1.46499 * 109.46840 * 180.02562 * 10 9 7 12 12 C 1.36881 * 126.40136 * 89.99703 * 11 10 9 13 13 C 1.34671 * 106.82076 * 179.97438 * 12 11 10 14 14 N 1.34127 * 108.02129 * 0.02562 * 13 12 11 15 15 C 1.30511 * 109.25181 * 359.72172 * 14 13 12 16 16 N 1.46902 * 109.47034 * 119.99655 * 2 1 3 17 17 C 1.46902 * 110.99649 * 275.00423 * 16 2 1 18 18 C 1.50708 * 109.47032 * 179.97438 * 17 16 2 19 19 O 1.21298 * 119.99625 * 359.97438 * 18 17 16 20 20 N 1.34778 * 120.00293 * 179.97438 * 18 17 16 21 21 C 1.37090 * 120.00219 * 180.02562 * 20 18 17 22 22 H 1.08007 * 120.00046 * 359.97438 * 21 20 18 23 23 C 1.38946 * 120.00282 * 180.02562 * 21 20 18 24 24 N 1.31412 * 119.99665 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 120.00238 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47536 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47438 * 119.99572 * 25 23 21 28 28 H 1.48507 * 109.47331 * 239.99370 * 25 23 21 29 29 H 1.08995 * 109.46928 * 60.00466 * 1 2 3 30 30 H 1.09007 * 109.47250 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47181 * 300.00343 * 1 2 3 32 32 H 1.09000 * 109.46983 * 65.00151 * 4 2 1 33 33 H 1.09004 * 109.47116 * 304.99723 * 4 2 1 34 34 H 1.08999 * 109.47333 * 269.99341 * 6 5 4 35 35 H 1.08997 * 109.47024 * 30.00155 * 6 5 4 36 36 H 1.09000 * 109.46875 * 149.99915 * 6 5 4 37 37 H 1.09002 * 109.47152 * 60.00245 * 9 7 5 38 38 H 1.09001 * 109.46980 * 300.00345 * 9 7 5 39 39 H 1.09001 * 109.47194 * 299.99742 * 10 9 7 40 40 H 1.08992 * 109.47399 * 59.99914 * 10 9 7 41 41 H 1.08002 * 126.58719 * 359.96564 * 12 11 10 42 42 H 1.07999 * 125.99048 * 180.02562 * 13 12 11 43 43 H 1.07995 * 125.64679 * 180.28977 * 15 14 13 44 44 H 1.00894 * 111.00418 * 151.04803 * 16 2 1 45 45 H 1.09000 * 109.47422 * 299.99338 * 17 16 2 46 46 H 1.08995 * 109.47825 * 59.99981 * 17 16 2 47 47 H 0.96999 * 119.99175 * 359.97438 * 20 18 17 48 48 H 0.96999 * 120.00105 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 3.5001 -0.8264 -1.1904 6 6 4.3344 0.2340 -1.7611 7 6 4.0758 -1.8986 -0.6113 8 8 3.3852 -2.7767 -0.1391 9 6 5.5777 -2.0065 -0.5504 10 6 5.9674 -3.3088 0.1518 11 7 7.4274 -3.4133 0.2115 12 6 8.2347 -2.9489 1.2146 13 6 9.5001 -3.2540 0.8693 14 7 9.4666 -3.8868 -0.3128 15 6 8.2278 -3.9908 -0.7102 16 7 2.0197 -0.6924 1.1995 17 6 2.0823 0.2228 2.3469 18 6 2.5872 -0.5215 3.5562 19 8 2.8668 -1.6988 3.4706 20 7 2.7280 0.1208 4.7326 21 6 3.1878 -0.5562 5.8325 22 1 3.4367 -1.6044 5.7564 23 6 3.3324 0.1059 7.0455 24 7 3.0290 1.3811 7.1382 25 14 3.9582 -0.8167 8.5443 26 1 4.2259 -2.2309 8.1791 27 1 5.2118 -0.1840 9.0274 28 1 2.9338 -0.7687 9.6185 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.7517 -0.1584 -2.1369 33 1 1.6055 -1.7199 -1.2949 34 1 4.5426 0.0092 -2.8072 35 1 3.8091 1.1865 -1.6918 36 1 5.2722 0.2952 -1.2090 37 1 5.9806 -1.1593 0.0048 38 1 5.9835 -2.0040 -1.5620 39 1 5.5616 -3.3117 1.1634 40 1 5.5646 -4.1557 -0.4036 41 1 7.9177 -2.4363 2.1108 42 1 10.3866 -3.0285 1.4435 43 1 7.8977 -4.4591 -1.6257 44 1 2.9173 -1.1204 1.0289 45 1 2.7588 1.0464 2.1183 46 1 1.0870 0.6165 2.5525 47 1 2.5047 1.0623 4.8008 48 1 3.1304 1.8435 7.9849 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277901048.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:55 Heat of formation + Delta-G solvation = 3.118766 kcal Electronic energy + Delta-G solvation = -29788.750681 eV Core-core repulsion = 25687.413459 eV Total energy + Delta-G solvation = -4101.337222 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.09136 -40.46011 -38.27991 -36.89613 -35.12185 -34.86167 -33.87118 -31.47763 -31.09853 -30.46988 -29.41790 -27.73166 -26.47856 -26.31110 -24.31877 -23.80108 -21.37315 -21.00992 -20.52066 -19.53251 -19.15379 -18.00693 -17.85325 -16.85004 -16.58583 -16.52587 -15.83337 -15.30336 -15.15251 -14.97315 -14.50828 -14.45301 -14.03713 -13.88855 -13.84000 -13.67608 -13.46597 -13.19141 -12.98132 -12.95169 -12.69761 -12.54818 -12.47437 -12.07571 -11.87137 -11.72392 -11.57537 -11.56738 -11.37730 -11.12685 -10.91123 -10.34691 -10.22617 -10.12279 -10.01970 -9.68223 -9.51599 -8.93179 -8.58175 -8.39868 -8.00224 -7.93922 -6.41966 -3.82550 1.97958 2.38854 2.48065 2.89810 3.12421 3.15856 3.26549 3.33928 3.91551 4.09056 4.22560 4.33420 4.44262 4.48262 4.62860 4.70659 4.77885 4.90401 4.97279 5.02035 5.03837 5.14869 5.22670 5.23503 5.26824 5.33612 5.40450 5.45384 5.55412 5.68209 5.69604 5.71234 5.78879 5.98482 6.00271 6.13599 6.21322 6.27591 6.38249 6.67796 7.02031 7.09695 7.31123 7.55129 7.75902 7.95505 8.00045 8.07028 8.62085 9.18407 9.54726 10.06913 10.75991 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.007119 B = 0.003891 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3932.369733 B = 7195.147489 C =10480.170577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.066 3.934 3 H 0.039 0.961 4 C 0.113 3.887 5 N -0.624 5.624 6 C 0.075 3.925 7 C 0.509 3.491 8 O -0.502 6.502 9 C -0.154 4.154 10 C 0.117 3.883 11 N -0.456 5.456 12 C -0.048 4.048 13 C -0.036 4.036 14 N -0.498 5.498 15 C 0.175 3.825 16 N -0.657 5.657 17 C 0.049 3.951 18 C 0.440 3.560 19 O -0.577 6.577 20 N -0.566 5.566 21 C -0.297 4.297 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.903 5.903 25 Si 0.928 3.072 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.281 1.281 29 H 0.052 0.948 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.083 0.917 33 H 0.095 0.905 34 H 0.059 0.941 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.101 0.899 38 H 0.099 0.901 39 H 0.110 0.890 40 H 0.103 0.897 41 H 0.176 0.824 42 H 0.169 0.831 43 H 0.202 0.798 44 H 0.351 0.649 45 H 0.036 0.964 46 H 0.084 0.916 47 H 0.391 0.609 48 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.033 0.873 -20.431 20.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.045 4.045 3 H 0.057 0.943 4 C -0.010 4.010 5 N -0.359 5.359 6 C -0.068 4.068 7 C 0.296 3.704 8 O -0.375 6.375 9 C -0.194 4.194 10 C -0.006 4.006 11 N -0.139 5.139 12 C -0.181 4.181 13 C -0.183 4.183 14 N -0.217 5.217 15 C -0.107 4.107 16 N -0.295 5.295 17 C -0.084 4.084 18 C 0.225 3.775 19 O -0.460 6.460 20 N -0.203 5.203 21 C -0.427 4.427 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.544 5.544 25 Si 0.755 3.245 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.207 1.207 29 H 0.071 0.929 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.101 0.899 33 H 0.113 0.887 34 H 0.077 0.923 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.119 0.881 38 H 0.117 0.883 39 H 0.128 0.872 40 H 0.121 0.879 41 H 0.194 0.806 42 H 0.186 0.814 43 H 0.218 0.782 44 H 0.175 0.825 45 H 0.054 0.946 46 H 0.102 0.898 47 H 0.224 0.776 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.812 -0.841 -20.337 20.547 hybrid contribution 0.164 1.447 1.123 1.839 sum 2.976 0.605 -19.214 19.452 Atomic orbital electron populations 1.21746 0.93971 1.02758 1.01187 1.21932 0.96485 0.95664 0.90455 0.94278 1.21777 0.78713 1.03151 0.97354 1.47917 1.07169 1.21497 1.59348 1.21849 0.95615 0.90766 0.98557 1.20386 0.90082 0.81921 0.77967 1.90875 1.64363 1.38427 1.43841 1.22007 0.93638 1.00245 1.03551 1.21671 0.76006 0.97927 1.04993 1.45615 1.07826 1.42916 1.17549 1.22934 0.91451 1.07370 0.96375 1.22299 0.96504 1.04128 0.95369 1.70279 1.19478 1.19217 1.12706 1.24970 0.85793 1.02728 0.97249 1.60185 1.35943 1.31197 1.02223 1.21741 1.01003 0.93831 0.91797 1.19839 0.84918 0.88266 0.84433 1.90548 1.54859 1.15924 1.84677 1.41872 1.58061 1.12358 1.07982 1.19743 1.39729 0.96411 0.86812 0.87934 1.25244 0.97746 0.95774 0.99181 1.69620 1.48895 1.08863 1.27056 0.85821 0.78237 0.79649 0.80778 1.19222 1.20767 1.20727 0.92854 0.91607 0.92247 0.89900 0.88699 0.92257 0.90779 0.90946 0.88086 0.88287 0.87164 0.87873 0.80647 0.81422 0.78162 0.82458 0.94602 0.89754 0.77580 0.91968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.41 37.16 0.35 -1.19 16 2 C 0.07 0.81 2.95 -67.71 -0.20 0.61 16 3 H 0.04 0.45 7.80 -51.93 -0.40 0.04 16 4 C 0.11 1.14 5.20 -4.05 -0.02 1.12 16 5 N -0.62 -6.06 2.66 -181.57 -0.48 -6.55 16 6 C 0.08 0.46 10.24 59.85 0.61 1.08 16 7 C 0.51 6.07 6.04 -10.98 -0.07 6.00 16 8 O -0.50 -8.15 14.15 5.56 0.08 -8.07 16 9 C -0.15 -1.39 4.58 -27.88 -0.13 -1.52 16 10 C 0.12 1.23 5.44 -4.04 -0.02 1.21 16 11 N -0.46 -5.03 2.75 -118.58 -0.33 -5.36 16 12 C -0.05 -0.57 11.58 -16.56 -0.19 -0.76 16 13 C -0.04 -0.44 11.87 -17.81 -0.21 -0.65 16 14 N -0.50 -6.69 11.25 -14.66 -0.16 -6.86 16 15 C 0.17 1.91 12.56 -90.37 -1.14 0.78 16 16 N -0.66 -11.33 5.82 -107.99 -0.63 -11.96 16 17 C 0.05 0.90 5.97 -4.97 -0.03 0.88 16 18 C 0.44 10.65 7.82 -10.98 -0.09 10.56 16 19 O -0.58 -16.07 15.78 5.54 0.09 -15.98 16 20 N -0.57 -14.48 5.29 -10.96 -0.06 -14.54 16 21 C -0.30 -8.34 9.68 -14.94 -0.14 -8.49 16 22 H 0.10 3.04 7.16 -52.48 -0.38 2.66 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.60 13.05 55.50 0.72 -23.87 16 25 Si 0.93 21.15 29.55 -169.99 -5.02 16.13 16 26 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 27 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 28 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.71 7.45 -51.93 -0.39 0.32 16 32 H 0.08 0.58 8.07 -51.93 -0.42 0.16 16 33 H 0.09 1.14 7.42 -51.93 -0.39 0.75 16 34 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 35 H 0.07 0.40 8.07 -51.93 -0.42 -0.02 16 36 H 0.07 0.41 6.44 -51.93 -0.33 0.08 16 37 H 0.10 0.91 7.40 -51.93 -0.38 0.53 16 38 H 0.10 0.66 8.11 -51.93 -0.42 0.24 16 39 H 0.11 1.45 8.10 -51.93 -0.42 1.03 16 40 H 0.10 0.98 8.10 -51.93 -0.42 0.56 16 41 H 0.18 1.89 8.06 -52.49 -0.42 1.47 16 42 H 0.17 1.72 8.06 -52.49 -0.42 1.30 16 43 H 0.20 1.46 8.06 -52.49 -0.42 1.04 16 44 H 0.35 6.40 4.17 -39.30 -0.16 6.24 16 45 H 0.04 0.60 8.06 -51.93 -0.42 0.18 16 46 H 0.08 1.45 7.44 -51.93 -0.39 1.06 16 47 H 0.39 9.58 7.90 -40.82 -0.32 9.26 16 48 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 399.06 15.07 6.01 6.01 Total: -1.00 -36.24 399.06 -8.48 -44.73 By element: Atomic # 1 Polarization: 23.54 SS G_CDS: -7.33 Total: 16.21 kcal Atomic # 6 Polarization: 11.47 SS G_CDS: -1.37 Total: 10.10 kcal Atomic # 7 Polarization: -68.19 SS G_CDS: -0.94 Total: -69.13 kcal Atomic # 8 Polarization: -24.21 SS G_CDS: 0.17 Total: -24.05 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -36.24 -8.48 -44.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277901048.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.845 kcal (2) G-P(sol) polarization free energy of solvation -36.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds