Wall clock time and date at job start Tue Mar 31 2020 20:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47081 * 2 1 4 4 C 1.53002 * 109.46965 * 119.99885 * 2 1 3 5 5 N 1.46507 * 109.46899 * 174.99772 * 4 2 1 6 6 C 1.46502 * 119.99772 * 90.00169 * 5 4 2 7 7 C 1.34777 * 120.00323 * 269.99714 * 5 4 2 8 8 O 1.21283 * 119.99685 * 0.02562 * 7 5 4 9 9 C 1.50692 * 120.00205 * 179.97438 * 7 5 4 10 10 C 1.52993 * 109.47292 * 180.02562 * 9 7 5 11 11 N 1.46503 * 109.47057 * 180.02562 * 10 9 7 12 12 C 1.36881 * 126.39837 * 90.00573 * 11 10 9 13 13 C 1.34663 * 106.81938 * 179.97438 * 12 11 10 14 14 N 1.34125 * 108.02340 * 359.97438 * 13 12 11 15 15 C 1.30508 * 109.25243 * 359.72759 * 14 13 12 16 16 N 1.46898 * 109.47140 * 239.99594 * 2 1 3 17 17 C 1.46906 * 110.99888 * 84.99977 * 16 2 1 18 18 C 1.50699 * 109.47140 * 180.02562 * 17 16 2 19 19 O 1.21297 * 119.99980 * 359.97438 * 18 17 16 20 20 N 1.34779 * 120.00037 * 180.02562 * 18 17 16 21 21 C 1.37097 * 119.99944 * 180.02562 * 20 18 17 22 22 H 1.08003 * 120.00055 * 359.97438 * 21 20 18 23 23 C 1.38948 * 119.99682 * 179.97438 * 21 20 18 24 24 N 1.31408 * 120.00492 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99897 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46948 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.47378 * 120.00054 * 25 23 21 28 28 H 1.48501 * 109.47174 * 239.99969 * 25 23 21 29 29 H 1.08997 * 109.47119 * 299.99707 * 1 2 3 30 30 H 1.08994 * 109.46950 * 60.00641 * 1 2 3 31 31 H 1.09006 * 109.46704 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47418 * 294.99678 * 4 2 1 33 33 H 1.09004 * 109.47353 * 55.00331 * 4 2 1 34 34 H 1.09000 * 109.47413 * 89.99706 * 6 5 4 35 35 H 1.09001 * 109.46948 * 209.99843 * 6 5 4 36 36 H 1.09005 * 109.47036 * 329.99514 * 6 5 4 37 37 H 1.09003 * 109.47077 * 300.00738 * 9 7 5 38 38 H 1.09002 * 109.47032 * 60.00365 * 9 7 5 39 39 H 1.09003 * 109.47454 * 300.00252 * 10 9 7 40 40 H 1.08997 * 109.47062 * 60.00535 * 10 9 7 41 41 H 1.08006 * 126.58930 * 359.95373 * 12 11 10 42 42 H 1.08003 * 125.99261 * 179.97438 * 13 12 11 43 43 H 1.07998 * 125.64822 * 180.28986 * 15 14 13 44 44 H 1.00902 * 111.00533 * 321.04383 * 16 2 1 45 45 H 1.09000 * 109.47033 * 300.00113 * 17 16 2 46 46 H 1.09001 * 109.46544 * 60.00058 * 17 16 2 47 47 H 0.96996 * 119.99844 * 359.97438 * 20 18 17 48 48 H 0.97001 * 120.00876 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5001 -0.8264 1.1906 6 6 4.3344 0.2340 1.7613 7 6 4.0758 -1.8987 0.6116 8 8 3.3851 -2.7764 0.1389 9 6 5.5776 -2.0066 0.5508 10 6 5.9674 -3.3084 -0.1522 11 7 7.4274 -3.4135 -0.2108 12 6 8.2382 -3.9951 0.7262 13 6 9.5021 -3.8723 0.2781 14 7 9.4642 -3.2337 -0.9008 15 6 8.2242 -2.9612 -1.2029 16 7 2.0197 -0.6926 -1.1994 17 6 2.0824 0.2225 -2.3469 18 6 2.5873 -0.5220 -3.5560 19 8 2.8677 -1.6989 -3.4701 20 7 2.7282 0.1203 -4.7325 21 6 3.1870 -0.5572 -5.8326 22 1 3.4359 -1.6053 -5.7563 23 6 3.3317 0.1049 -7.0456 24 7 3.0284 1.3801 -7.1386 25 14 3.9562 -0.8183 -8.5448 26 1 4.2240 -2.2324 -8.1792 27 1 2.9315 -0.7696 -9.6184 28 1 5.2101 -0.1865 -9.0283 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.7517 -0.1583 2.1370 33 1 1.6054 -1.7198 1.2952 34 1 4.5425 0.0093 2.8073 35 1 5.2722 0.2952 1.2092 36 1 3.8091 1.1866 1.6918 37 1 5.9805 -1.1595 -0.0044 38 1 5.9834 -2.0041 1.5624 39 1 5.5644 -4.1557 0.4026 40 1 5.5617 -3.3105 -1.1639 41 1 7.9245 -4.4624 1.6481 42 1 10.3907 -4.2261 0.7799 43 1 7.8908 -2.4551 -2.0968 44 1 1.4496 -1.4981 -1.4100 45 1 1.0870 0.6162 -2.5525 46 1 2.7589 1.0461 -2.1182 47 1 2.5043 1.0615 -4.8011 48 1 3.1298 1.8424 -7.9853 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277901051.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:58 Heat of formation + Delta-G solvation = -0.738110 kcal Electronic energy + Delta-G solvation = -29740.000232 eV Core-core repulsion = 25638.495764 eV Total energy + Delta-G solvation = -4101.504468 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.99722 -39.89541 -38.31077 -36.83111 -34.97167 -34.72227 -33.85245 -31.39758 -31.03339 -30.30528 -29.33742 -27.52185 -26.28244 -26.19406 -24.19448 -23.74340 -21.29215 -21.04232 -20.70541 -19.39010 -19.01800 -17.89994 -17.74162 -16.44082 -16.41260 -16.09857 -15.68196 -15.25581 -15.03081 -14.72830 -14.60133 -14.38046 -13.94408 -13.82965 -13.79017 -13.56805 -13.25464 -13.11128 -13.01084 -12.77620 -12.65686 -12.42051 -12.32283 -12.14081 -12.05512 -11.66372 -11.53752 -11.42777 -11.31065 -11.04834 -10.97589 -10.33181 -10.21176 -9.96883 -9.79283 -9.50603 -9.49713 -8.69563 -8.51309 -8.34220 -7.96100 -7.89111 -6.40496 -3.81056 2.05906 2.65081 2.85159 3.15525 3.17537 3.21741 3.28225 3.35533 3.93742 4.11353 4.33946 4.53490 4.62877 4.66829 4.79048 4.83756 4.91681 4.97740 5.05961 5.12789 5.17623 5.21171 5.25606 5.28649 5.33265 5.39916 5.45953 5.53866 5.60709 5.68715 5.71012 5.73471 5.76327 5.88737 6.03013 6.07724 6.29345 6.31385 6.51531 6.73858 7.19315 7.30131 7.43081 7.56565 7.77678 8.08488 8.10896 8.36501 8.63521 9.20109 9.56532 10.08567 10.77441 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.007104 B = 0.003892 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3940.418801 B = 7192.058608 C =10481.602104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.065 3.935 3 H 0.074 0.926 4 C 0.131 3.869 5 N -0.608 5.608 6 C 0.080 3.920 7 C 0.531 3.469 8 O -0.511 6.511 9 C -0.150 4.150 10 C 0.119 3.881 11 N -0.456 5.456 12 C -0.062 4.062 13 C -0.035 4.035 14 N -0.501 5.501 15 C 0.189 3.811 16 N -0.650 5.650 17 C 0.051 3.949 18 C 0.441 3.559 19 O -0.576 6.576 20 N -0.567 5.567 21 C -0.297 4.297 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.903 5.903 25 Si 0.927 3.073 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.281 1.281 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.051 0.949 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.099 0.901 38 H 0.091 0.909 39 H 0.097 0.903 40 H 0.112 0.888 41 H 0.170 0.830 42 H 0.166 0.834 43 H 0.206 0.794 44 H 0.353 0.647 45 H 0.039 0.961 46 H 0.079 0.921 47 H 0.391 0.609 48 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.129 -0.412 21.597 21.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.047 4.047 3 H 0.093 0.907 4 C 0.007 3.993 5 N -0.342 5.342 6 C -0.063 4.063 7 C 0.318 3.682 8 O -0.385 6.385 9 C -0.191 4.191 10 C -0.004 4.004 11 N -0.138 5.138 12 C -0.195 4.195 13 C -0.183 4.183 14 N -0.219 5.219 15 C -0.094 4.094 16 N -0.282 5.282 17 C -0.082 4.082 18 C 0.226 3.774 19 O -0.459 6.459 20 N -0.204 5.204 21 C -0.426 4.426 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.545 5.545 25 Si 0.754 3.246 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.207 1.207 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.101 0.899 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.117 0.883 38 H 0.109 0.891 39 H 0.115 0.885 40 H 0.130 0.870 41 H 0.188 0.812 42 H 0.183 0.817 43 H 0.223 0.777 44 H 0.174 0.826 45 H 0.057 0.943 46 H 0.097 0.903 47 H 0.224 0.776 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.161 -1.304 20.914 21.065 hybrid contribution -1.529 0.516 -0.581 1.715 sum 0.632 -0.787 20.332 20.357 Atomic orbital electron populations 1.22471 0.97066 1.02446 1.02175 1.22008 0.92467 0.98084 0.92190 0.90746 1.21452 0.79782 1.01872 0.96183 1.47456 1.06318 1.21153 1.59302 1.21740 0.95736 0.90955 0.97890 1.19896 0.89209 0.81752 0.77346 1.90733 1.64495 1.39465 1.43828 1.21940 0.94631 0.99775 1.02783 1.21667 0.75588 0.98087 1.05019 1.45690 1.08048 1.42818 1.17223 1.22710 0.91548 1.07379 0.97887 1.22278 0.96354 1.04779 0.94881 1.70324 1.19486 1.17046 1.15005 1.25177 0.85565 1.02943 0.95676 1.60116 1.57746 1.08480 1.01871 1.21688 0.99480 0.95679 0.91305 1.19840 0.85089 0.88296 0.84146 1.90553 1.54797 1.16063 1.84513 1.41881 1.58134 1.12377 1.07991 1.19734 1.39775 0.96381 0.86747 0.87947 1.25237 0.97740 0.95757 0.99203 1.69614 1.48956 1.08875 1.27046 0.85831 0.78258 0.79690 0.80773 1.19216 1.20805 1.20725 0.92284 0.92286 0.92135 0.90743 0.89917 0.93032 0.91214 0.91257 0.88289 0.89101 0.88459 0.86986 0.81231 0.81685 0.77733 0.82592 0.94292 0.90264 0.77631 0.91987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.78 9.16 37.16 0.34 -1.44 16 2 C 0.06 0.72 2.89 -67.71 -0.20 0.53 16 3 H 0.07 0.80 7.80 -51.93 -0.40 0.39 16 4 C 0.13 1.30 5.20 -4.04 -0.02 1.28 16 5 N -0.61 -6.32 2.78 -181.56 -0.50 -6.82 16 6 C 0.08 0.57 10.24 59.85 0.61 1.18 16 7 C 0.53 6.82 7.01 -10.99 -0.08 6.74 16 8 O -0.51 -8.55 14.71 5.55 0.08 -8.46 16 9 C -0.15 -1.55 4.58 -27.89 -0.13 -1.68 16 10 C 0.12 1.37 5.44 -4.04 -0.02 1.35 16 11 N -0.46 -5.42 2.75 -118.58 -0.33 -5.75 16 12 C -0.06 -0.67 11.58 -16.56 -0.19 -0.86 16 13 C -0.03 -0.43 11.87 -17.82 -0.21 -0.64 16 14 N -0.50 -7.47 11.25 -14.67 -0.17 -7.63 16 15 C 0.19 2.56 12.56 -90.37 -1.14 1.43 16 16 N -0.65 -10.20 4.15 -107.99 -0.45 -10.65 16 17 C 0.05 0.89 5.97 -4.97 -0.03 0.86 16 18 C 0.44 10.32 7.82 -10.99 -0.09 10.24 16 19 O -0.58 -15.57 15.78 5.54 0.09 -15.48 16 20 N -0.57 -14.31 5.29 -10.96 -0.06 -14.37 16 21 C -0.30 -8.28 9.68 -14.93 -0.14 -8.43 16 22 H 0.10 3.02 7.16 -52.48 -0.38 2.64 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.64 13.05 55.50 0.72 -23.92 16 25 Si 0.93 21.24 29.55 -169.99 -5.02 16.22 16 26 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 27 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 28 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.63 7.45 -51.93 -0.39 0.24 16 31 H 0.06 0.62 8.13 -51.93 -0.42 0.19 16 32 H 0.07 0.53 8.07 -51.93 -0.42 0.11 16 33 H 0.08 0.95 7.42 -51.93 -0.39 0.57 16 34 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.07 0.49 6.44 -51.93 -0.33 0.16 16 36 H 0.07 0.43 8.07 -51.93 -0.42 0.01 16 37 H 0.10 1.05 7.40 -51.93 -0.38 0.66 16 38 H 0.09 0.74 8.11 -51.93 -0.42 0.32 16 39 H 0.10 1.06 8.10 -51.93 -0.42 0.64 16 40 H 0.11 1.57 8.10 -51.93 -0.42 1.15 16 41 H 0.17 1.28 8.06 -52.48 -0.42 0.86 16 42 H 0.17 1.58 8.06 -52.48 -0.42 1.16 16 43 H 0.21 2.49 8.06 -52.49 -0.42 2.07 16 44 H 0.35 6.29 8.17 -39.29 -0.32 5.97 16 45 H 0.04 0.62 7.44 -51.93 -0.39 0.24 16 46 H 0.08 1.28 8.06 -51.93 -0.42 0.86 16 47 H 0.39 9.48 7.90 -40.82 -0.32 9.16 16 48 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 402.70 15.07 6.07 6.07 Total: -1.00 -35.05 402.70 -8.44 -43.49 By element: Atomic # 1 Polarization: 23.75 SS G_CDS: -7.49 Total: 16.25 kcal Atomic # 6 Polarization: 12.43 SS G_CDS: -1.38 Total: 11.05 kcal Atomic # 7 Polarization: -68.36 SS G_CDS: -0.78 Total: -69.14 kcal Atomic # 8 Polarization: -24.11 SS G_CDS: 0.17 Total: -23.94 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -35.05 -8.44 -43.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277901051.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.753 kcal (2) G-P(sol) polarization free energy of solvation -35.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds