Wall clock time and date at job start Tue Mar 31 2020 20:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47081 * 2 1 4 4 C 1.53002 * 109.46965 * 119.99885 * 2 1 3 5 5 N 1.46507 * 109.46899 * 174.99772 * 4 2 1 6 6 C 1.46502 * 119.99772 * 90.00169 * 5 4 2 7 7 C 1.34777 * 120.00323 * 269.99714 * 5 4 2 8 8 O 1.21283 * 119.99685 * 0.02562 * 7 5 4 9 9 C 1.50692 * 120.00205 * 179.97438 * 7 5 4 10 10 C 1.52993 * 109.47292 * 180.02562 * 9 7 5 11 11 N 1.46503 * 109.47057 * 180.02562 * 10 9 7 12 12 C 1.36881 * 126.39837 * 90.00573 * 11 10 9 13 13 C 1.34663 * 106.81938 * 179.97438 * 12 11 10 14 14 N 1.34125 * 108.02340 * 359.97438 * 13 12 11 15 15 C 1.30508 * 109.25243 * 359.72759 * 14 13 12 16 16 N 1.46898 * 109.47140 * 239.99594 * 2 1 3 17 17 C 1.46906 * 110.99888 * 84.99977 * 16 2 1 18 18 C 1.50699 * 109.47140 * 180.02562 * 17 16 2 19 19 O 1.21297 * 119.99980 * 359.97438 * 18 17 16 20 20 N 1.34779 * 120.00037 * 180.02562 * 18 17 16 21 21 C 1.37097 * 119.99944 * 180.02562 * 20 18 17 22 22 H 1.08003 * 120.00055 * 359.97438 * 21 20 18 23 23 C 1.38948 * 119.99682 * 179.97438 * 21 20 18 24 24 N 1.31408 * 120.00492 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99897 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46948 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.47378 * 120.00054 * 25 23 21 28 28 H 1.48501 * 109.47174 * 239.99969 * 25 23 21 29 29 H 1.08997 * 109.47119 * 299.99707 * 1 2 3 30 30 H 1.08994 * 109.46950 * 60.00641 * 1 2 3 31 31 H 1.09006 * 109.46704 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47418 * 294.99678 * 4 2 1 33 33 H 1.09004 * 109.47353 * 55.00331 * 4 2 1 34 34 H 1.09000 * 109.47413 * 89.99706 * 6 5 4 35 35 H 1.09001 * 109.46948 * 209.99843 * 6 5 4 36 36 H 1.09005 * 109.47036 * 329.99514 * 6 5 4 37 37 H 1.09003 * 109.47077 * 300.00738 * 9 7 5 38 38 H 1.09002 * 109.47032 * 60.00365 * 9 7 5 39 39 H 1.09003 * 109.47454 * 300.00252 * 10 9 7 40 40 H 1.08997 * 109.47062 * 60.00535 * 10 9 7 41 41 H 1.08006 * 126.58930 * 359.95373 * 12 11 10 42 42 H 1.08003 * 125.99261 * 179.97438 * 13 12 11 43 43 H 1.07998 * 125.64822 * 180.28986 * 15 14 13 44 44 H 1.00902 * 111.00533 * 321.04383 * 16 2 1 45 45 H 1.09000 * 109.47033 * 300.00113 * 17 16 2 46 46 H 1.09001 * 109.46544 * 60.00058 * 17 16 2 47 47 H 0.96996 * 119.99844 * 359.97438 * 20 18 17 48 48 H 0.97001 * 120.00876 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5001 -0.8264 1.1906 6 6 4.3344 0.2340 1.7613 7 6 4.0758 -1.8987 0.6116 8 8 3.3851 -2.7764 0.1389 9 6 5.5776 -2.0066 0.5508 10 6 5.9674 -3.3084 -0.1522 11 7 7.4274 -3.4135 -0.2108 12 6 8.2382 -3.9951 0.7262 13 6 9.5021 -3.8723 0.2781 14 7 9.4642 -3.2337 -0.9008 15 6 8.2242 -2.9612 -1.2029 16 7 2.0197 -0.6926 -1.1994 17 6 2.0824 0.2225 -2.3469 18 6 2.5873 -0.5220 -3.5560 19 8 2.8677 -1.6989 -3.4701 20 7 2.7282 0.1203 -4.7325 21 6 3.1870 -0.5572 -5.8326 22 1 3.4359 -1.6053 -5.7563 23 6 3.3317 0.1049 -7.0456 24 7 3.0284 1.3801 -7.1386 25 14 3.9562 -0.8183 -8.5448 26 1 4.2240 -2.2324 -8.1792 27 1 2.9315 -0.7696 -9.6184 28 1 5.2101 -0.1865 -9.0283 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.7517 -0.1583 2.1370 33 1 1.6054 -1.7198 1.2952 34 1 4.5425 0.0093 2.8073 35 1 5.2722 0.2952 1.2092 36 1 3.8091 1.1866 1.6918 37 1 5.9805 -1.1595 -0.0044 38 1 5.9834 -2.0041 1.5624 39 1 5.5644 -4.1557 0.4026 40 1 5.5617 -3.3105 -1.1639 41 1 7.9245 -4.4624 1.6481 42 1 10.3907 -4.2261 0.7799 43 1 7.8908 -2.4551 -2.0968 44 1 1.4496 -1.4981 -1.4100 45 1 1.0870 0.6162 -2.5525 46 1 2.7589 1.0461 -2.1182 47 1 2.5043 1.0615 -4.8011 48 1 3.1298 1.8424 -7.9853 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277901051.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:57 Heat of formation + Delta-G solvation = -24.631016 kcal Electronic energy + Delta-G solvation = -29741.036307 eV Core-core repulsion = 25638.495764 eV Total energy + Delta-G solvation = -4102.540542 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.95488 -40.84411 -40.09430 -37.97606 -36.11684 -35.72598 -35.68925 -33.28674 -32.29270 -31.30553 -30.26376 -28.21773 -27.92799 -27.03719 -25.73323 -24.84868 -22.24404 -21.99016 -21.64446 -21.11387 -20.06056 -19.86189 -18.67931 -17.81881 -17.35802 -17.14171 -16.85715 -16.60080 -16.35828 -16.08145 -15.93522 -15.52460 -15.39957 -15.05964 -14.77752 -14.71151 -14.31199 -14.22176 -13.98342 -13.69205 -13.59146 -13.52946 -13.47050 -13.32770 -13.14583 -13.04810 -12.87390 -12.70469 -12.45474 -12.39297 -12.24351 -12.13178 -11.84523 -11.51218 -10.97937 -10.79139 -10.50969 -10.32585 -10.00578 -9.51965 -9.43915 -9.07231 -8.47486 -5.95480 1.12840 1.34632 1.39992 1.53704 1.72977 1.90558 2.06858 2.22184 2.27755 2.35878 2.98271 3.20027 3.56164 3.66223 3.72492 3.80595 3.87941 3.97842 4.10935 4.20866 4.29156 4.35207 4.36999 4.42540 4.47202 4.51645 4.58355 4.61720 4.62836 4.75398 4.79034 4.80874 4.86140 4.96198 5.01420 5.07282 5.27180 5.38052 5.40342 5.73808 5.85908 5.93793 6.19958 6.21618 6.47232 6.58721 6.61124 7.13527 7.14025 7.45187 7.57279 8.13797 8.70270 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.007104 B = 0.003892 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3940.418801 B = 7192.058608 C =10481.602104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.065 3.935 3 H 0.088 0.912 4 C 0.131 3.869 5 N -0.606 5.606 6 C 0.074 3.926 7 C 0.522 3.478 8 O -0.561 6.561 9 C -0.138 4.138 10 C 0.127 3.873 11 N -0.453 5.453 12 C -0.047 4.047 13 C -0.056 4.056 14 N -0.533 5.533 15 C 0.166 3.834 16 N -0.661 5.661 17 C 0.069 3.931 18 C 0.438 3.562 19 O -0.617 6.617 20 N -0.575 5.575 21 C -0.330 4.330 22 H 0.075 0.925 23 C -0.011 4.011 24 N -0.921 5.921 25 Si 0.988 3.012 26 H -0.276 1.276 27 H -0.270 1.270 28 H -0.270 1.270 29 H 0.087 0.913 30 H 0.049 0.951 31 H 0.050 0.950 32 H 0.114 0.886 33 H 0.062 0.938 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.084 0.916 37 H 0.096 0.904 38 H 0.121 0.879 39 H 0.106 0.894 40 H 0.077 0.923 41 H 0.207 0.793 42 H 0.188 0.812 43 H 0.205 0.795 44 H 0.338 0.662 45 H 0.058 0.942 46 H 0.098 0.902 47 H 0.395 0.605 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.044 0.921 23.847 23.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.046 4.046 3 H 0.106 0.894 4 C 0.007 3.993 5 N -0.338 5.338 6 C -0.068 4.068 7 C 0.310 3.690 8 O -0.439 6.439 9 C -0.179 4.179 10 C 0.005 3.995 11 N -0.135 5.135 12 C -0.180 4.180 13 C -0.203 4.203 14 N -0.252 5.252 15 C -0.117 4.117 16 N -0.292 5.292 17 C -0.064 4.064 18 C 0.225 3.775 19 O -0.502 6.502 20 N -0.213 5.213 21 C -0.459 4.459 22 H 0.093 0.907 23 C -0.211 4.211 24 N -0.562 5.562 25 Si 0.812 3.188 26 H -0.201 1.201 27 H -0.195 1.195 28 H -0.195 1.195 29 H 0.106 0.894 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.132 0.868 33 H 0.081 0.919 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.103 0.897 37 H 0.114 0.886 38 H 0.139 0.861 39 H 0.124 0.876 40 H 0.096 0.904 41 H 0.224 0.776 42 H 0.205 0.795 43 H 0.221 0.779 44 H 0.156 0.844 45 H 0.076 0.924 46 H 0.116 0.884 47 H 0.228 0.772 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.072 0.105 23.202 23.294 hybrid contribution -1.517 0.105 -1.183 1.927 sum 0.554 0.210 22.019 22.027 Atomic orbital electron populations 1.22388 0.95790 1.02163 1.03116 1.22160 0.93545 0.98340 0.90545 0.89356 1.21539 0.79505 1.01287 0.96943 1.47583 1.06929 1.21063 1.58260 1.21985 0.95349 0.90490 0.98965 1.20319 0.89959 0.81852 0.76897 1.90718 1.65611 1.41407 1.46137 1.21844 0.93212 0.98657 1.04142 1.21508 0.75264 0.99403 1.03350 1.45726 1.08034 1.42544 1.17175 1.23288 0.90783 1.05705 0.98254 1.22767 0.98002 1.05086 0.94436 1.70282 1.20185 1.18143 1.16601 1.25223 0.85814 1.04147 0.96487 1.60133 1.58489 1.08124 1.02495 1.21516 1.00379 0.95317 0.89189 1.20941 0.83305 0.88061 0.85144 1.90530 1.56115 1.18225 1.85354 1.41937 1.58696 1.12484 1.08206 1.19641 1.41961 0.95753 0.88573 0.90667 1.25961 0.97329 0.96583 1.01204 1.69665 1.48881 1.09615 1.28029 0.84937 0.78268 0.78014 0.77535 1.20069 1.19547 1.19534 0.89379 0.93209 0.93082 0.86801 0.91923 0.90628 0.91297 0.89717 0.88586 0.86077 0.87611 0.90441 0.77575 0.79491 0.77856 0.84353 0.92434 0.88360 0.77154 0.91353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.05 9.16 71.98 0.66 -2.39 16 2 C 0.06 1.32 2.89 44.92 0.13 1.45 16 3 H 0.09 1.58 7.80 -2.39 -0.02 1.56 16 4 C 0.13 2.29 5.20 86.38 0.45 2.74 16 5 N -0.61 -11.31 2.78 -846.72 -2.35 -13.66 16 6 C 0.07 0.80 10.24 127.77 1.31 2.10 16 7 C 0.52 13.13 7.01 87.65 0.61 13.74 16 8 O -0.56 -19.33 14.71 -3.04 -0.04 -19.37 16 9 C -0.14 -2.72 4.58 29.84 0.14 -2.59 16 10 C 0.13 2.98 5.44 86.38 0.47 3.45 16 11 N -0.45 -10.67 2.75 -529.07 -1.46 -12.13 16 12 C -0.05 -0.93 11.58 83.09 0.96 0.03 16 13 C -0.06 -1.31 11.87 83.52 0.99 -0.32 16 14 N -0.53 -16.10 11.25 -200.31 -2.25 -18.36 16 15 C 0.17 4.65 12.56 180.26 2.26 6.92 16 16 N -0.66 -20.59 4.15 -495.57 -2.06 -22.64 16 17 C 0.07 2.34 5.97 85.56 0.51 2.85 16 18 C 0.44 21.07 7.82 87.66 0.69 21.75 16 19 O -0.62 -34.92 15.78 -3.08 -0.05 -34.97 16 20 N -0.58 -29.82 5.29 -306.98 -1.62 -31.45 16 21 C -0.33 -19.01 9.68 84.04 0.81 -18.20 16 22 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 23 C -0.01 -0.60 5.50 84.93 0.47 -0.14 16 24 N -0.92 -50.09 13.05 21.66 0.28 -49.81 16 25 Si 0.99 43.87 29.55 68.60 2.03 45.90 16 26 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 27 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 28 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 29 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.05 0.96 7.45 -2.39 -0.02 0.95 16 31 H 0.05 0.99 8.13 -2.38 -0.02 0.97 16 32 H 0.11 1.13 8.07 -2.39 -0.02 1.11 16 33 H 0.06 1.39 7.42 -2.39 -0.02 1.37 16 34 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.07 0.78 6.44 -2.39 -0.02 0.76 16 36 H 0.08 0.68 8.07 -2.38 -0.02 0.66 16 37 H 0.10 1.98 7.40 -2.39 -0.02 1.96 16 38 H 0.12 1.64 8.11 -2.39 -0.02 1.62 16 39 H 0.11 2.28 8.10 -2.39 -0.02 2.26 16 40 H 0.08 2.37 8.10 -2.39 -0.02 2.35 16 41 H 0.21 2.39 8.06 -2.91 -0.02 2.37 16 42 H 0.19 3.28 8.06 -2.91 -0.02 3.26 16 43 H 0.20 5.43 8.06 -2.91 -0.02 5.40 16 44 H 0.34 12.38 8.17 -89.69 -0.73 11.65 16 45 H 0.06 1.77 7.44 -2.39 -0.02 1.75 16 46 H 0.10 3.00 8.06 -2.39 -0.02 2.98 16 47 H 0.39 19.44 7.90 -92.71 -0.73 18.70 16 48 H 0.28 14.08 8.31 -92.71 -0.77 13.31 16 Total: -1.00 -79.67 402.70 2.46 -77.22 By element: Atomic # 1 Polarization: 48.35 SS G_CDS: -0.48 Total: 47.87 kcal Atomic # 6 Polarization: 20.94 SS G_CDS: 10.46 Total: 31.41 kcal Atomic # 7 Polarization: -138.59 SS G_CDS: -9.46 Total: -148.04 kcal Atomic # 8 Polarization: -54.25 SS G_CDS: -0.09 Total: -54.34 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -79.67 2.46 -77.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277901051.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.584 kcal (2) G-P(sol) polarization free energy of solvation -79.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds