Wall clock time and date at job start Tue Mar 31 2020 20:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46504 * 109.47100 * 2 1 4 4 N 1.28518 * 124.44417 * 270.27400 * 3 2 1 5 5 C 1.31125 * 109.05867 * 180.21364 * 4 3 2 6 6 C 1.50700 * 127.11217 * 179.82952 * 5 4 3 7 7 C 1.40923 * 105.77882 * 359.56697 * 5 4 3 8 8 C 1.47804 * 127.24015 * 180.29830 * 7 5 4 9 9 O 1.21553 * 119.99781 * 6.23620 * 8 7 5 10 10 N 1.34772 * 120.00083 * 186.23860 * 8 7 5 11 11 C 1.46928 * 120.63236 * 186.49440 * 10 8 7 12 12 C 1.52755 * 109.00753 * 233.58478 * 11 10 8 13 13 C 1.53048 * 109.38448 * 305.58414 * 12 11 10 14 14 O 1.42902 * 109.44691 * 301.23055 * 13 12 11 15 15 C 1.52991 * 109.46192 * 181.26496 * 13 12 11 16 16 N 1.46497 * 109.47284 * 59.92946 * 15 13 12 17 17 C 1.36942 * 119.99718 * 180.02562 * 16 15 13 18 18 H 1.07995 * 120.00228 * 0.02562 * 17 16 15 19 19 C 1.38820 * 119.99543 * 180.02562 * 17 16 15 20 20 N 1.31617 * 120.00020 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 119.99768 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47268 * 89.99594 * 21 19 17 23 23 H 1.48501 * 109.47293 * 210.00077 * 21 19 17 24 24 H 1.48509 * 109.47220 * 330.00110 * 21 19 17 25 25 C 1.53039 * 109.53477 * 61.23866 * 13 12 11 26 26 C 1.46929 * 120.63211 * 6.76897 * 10 8 7 27 27 N 1.28592 * 124.44135 * 89.99636 * 3 2 1 28 28 H 1.09007 * 109.47053 * 299.99912 * 1 2 3 29 29 H 1.08992 * 109.47268 * 59.99969 * 1 2 3 30 30 H 1.09001 * 109.46957 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47342 * 239.99597 * 2 1 3 32 32 H 1.09005 * 109.47137 * 119.99751 * 2 1 3 33 33 H 1.08995 * 109.47366 * 269.68603 * 6 5 4 34 34 H 1.09001 * 109.47026 * 29.68688 * 6 5 4 35 35 H 1.09003 * 109.47507 * 149.68311 * 6 5 4 36 36 H 1.09001 * 109.58332 * 353.41453 * 11 10 8 37 37 H 1.08997 * 109.58748 * 113.83739 * 11 10 8 38 38 H 1.09001 * 109.56290 * 185.55110 * 12 11 10 39 39 H 1.08996 * 109.36544 * 65.49489 * 12 11 10 40 40 H 0.96704 * 113.99969 * 300.05726 * 14 13 12 41 41 H 1.09001 * 109.47113 * 179.97438 * 15 13 12 42 42 H 1.09001 * 109.46856 * 299.93063 * 15 13 12 43 43 H 0.96997 * 120.00164 * 359.97438 * 16 15 13 44 44 H 0.97005 * 119.99440 * 179.97438 * 20 19 17 45 45 H 1.09001 * 109.49277 * 178.68155 * 25 13 12 46 46 H 1.08996 * 109.49770 * 58.59460 * 25 13 12 47 47 H 1.08996 * 109.58922 * 246.16112 * 26 10 8 48 48 H 1.09003 * 109.58492 * 6.58711 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 7 2.2559 2.0683 -1.0598 5 6 2.6832 3.2581 -0.7120 6 6 3.0826 4.3850 -1.6295 7 6 2.6860 3.2674 0.6972 8 6 3.0798 4.3828 1.5835 9 8 3.3433 5.4710 1.1105 10 7 3.1468 4.1931 2.9162 11 6 3.3973 5.3230 3.8214 12 6 4.5892 4.9886 4.7164 13 6 4.3330 3.6578 5.4275 14 8 3.1362 3.7551 6.2024 15 6 5.5117 3.3367 6.3484 16 7 5.6594 4.4027 7.3424 17 6 6.6557 4.3320 8.2792 18 1 7.3328 3.4906 8.2851 19 6 6.7954 5.3418 9.2214 20 7 5.9705 6.3675 9.2140 21 14 8.1548 5.2458 10.4990 22 1 9.3758 5.9076 9.9732 23 1 7.7161 5.9312 11.7412 24 1 8.4533 3.8221 10.7981 25 6 4.1788 2.5441 4.3892 26 6 2.9767 2.8517 3.4909 27 7 2.2607 2.0669 1.0605 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 4.1475 4.3136 -1.8503 34 1 2.5138 4.3174 -2.5569 35 1 2.8752 5.3391 -1.1449 36 1 3.6196 6.2164 3.2379 37 1 2.5170 5.4977 4.4400 38 1 4.7221 5.7772 5.4571 39 1 5.4883 4.9073 4.1055 40 1 3.1626 4.4425 6.8821 41 1 5.3292 2.3891 6.8553 42 1 6.4246 3.2619 5.7574 43 1 5.0521 5.1589 7.3364 44 1 6.0679 7.0729 9.8726 45 1 4.0197 1.5929 4.8971 46 1 5.0817 2.4859 3.7814 47 1 2.0614 2.8207 4.0820 48 1 2.9215 2.1150 2.6894 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281643917.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:33 Heat of formation + Delta-G solvation = 44.879445 kcal Electronic energy + Delta-G solvation = -30197.925547 eV Core-core repulsion = 26098.399204 eV Total energy + Delta-G solvation = -4099.526343 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.92746 -40.16716 -38.39878 -35.63235 -35.40493 -33.98894 -33.33253 -31.94532 -31.73424 -30.90621 -30.37769 -28.28326 -26.84156 -25.36238 -23.89112 -23.38590 -22.58046 -21.82066 -21.29491 -20.37574 -19.25510 -17.59353 -17.51350 -17.05527 -16.96601 -15.99019 -15.77091 -15.05062 -14.97956 -14.88219 -14.39253 -14.24831 -14.08419 -13.80656 -13.70756 -13.46414 -13.20755 -13.13033 -12.89994 -12.85905 -12.57929 -12.51415 -12.33083 -11.95339 -11.83238 -11.70910 -11.50565 -11.27309 -11.00545 -10.94607 -10.87367 -10.74360 -10.53623 -10.22916 -10.12315 -9.96213 -9.60194 -9.45326 -9.35869 -8.93758 -8.51209 -7.00092 -5.82808 -3.11782 1.09505 1.70473 1.81671 2.92936 3.15124 3.41151 3.46555 3.47980 3.62429 4.27248 4.31058 4.48331 4.53632 4.56715 4.60546 4.64197 4.94337 5.03830 5.04729 5.13392 5.22474 5.24865 5.29278 5.45290 5.48857 5.51420 5.51909 5.52634 5.65829 5.71491 5.73134 5.88396 5.96070 6.06853 6.08549 6.11601 6.15366 6.37434 6.40352 6.47374 6.61484 6.70130 6.77168 7.37548 7.65598 7.88124 8.10486 8.11614 8.36357 9.46824 10.00847 10.35004 11.40000 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.021619 B = 0.002482 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.835141 B =11277.227926 C =11971.023660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.132 3.868 3 N -0.144 5.144 4 N -0.292 5.292 5 C 0.060 3.940 6 C -0.070 4.070 7 C -0.040 4.040 8 C 0.605 3.395 9 O -0.532 6.532 10 N -0.590 5.590 11 C 0.118 3.882 12 C -0.156 4.156 13 C 0.129 3.871 14 O -0.561 6.561 15 C 0.129 3.871 16 N -0.729 5.729 17 C -0.240 4.240 18 H 0.070 0.930 19 C -0.012 4.012 20 N -0.934 5.934 21 Si 0.908 3.092 22 H -0.290 1.290 23 H -0.291 1.291 24 H -0.282 1.282 25 C -0.116 4.116 26 C 0.095 3.905 27 N -0.246 5.246 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.087 0.913 31 H 0.110 0.890 32 H 0.112 0.888 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.097 0.903 36 H 0.091 0.909 37 H 0.075 0.925 38 H 0.092 0.908 39 H 0.072 0.928 40 H 0.383 0.617 41 H 0.028 0.972 42 H 0.025 0.975 43 H 0.380 0.620 44 H 0.256 0.744 45 H 0.081 0.919 46 H 0.074 0.926 47 H 0.076 0.924 48 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.309 -11.693 -21.297 26.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.013 3.987 3 N -0.046 5.046 4 N -0.133 5.133 5 C -0.103 4.103 6 C -0.128 4.128 7 C -0.202 4.202 8 C 0.390 3.610 9 O -0.407 6.407 10 N -0.322 5.322 11 C -0.004 4.004 12 C -0.194 4.194 13 C 0.088 3.912 14 O -0.368 6.368 15 C 0.001 3.999 16 N -0.375 5.375 17 C -0.371 4.371 18 H 0.088 0.912 19 C -0.208 4.208 20 N -0.582 5.582 21 Si 0.739 3.261 22 H -0.217 1.217 23 H -0.217 1.217 24 H -0.208 1.208 25 C -0.154 4.154 26 C -0.028 4.028 27 N -0.093 5.093 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.106 0.894 31 H 0.129 0.871 32 H 0.130 0.870 33 H 0.099 0.901 34 H 0.093 0.907 35 H 0.116 0.884 36 H 0.110 0.890 37 H 0.093 0.907 38 H 0.110 0.890 39 H 0.091 0.909 40 H 0.232 0.768 41 H 0.046 0.954 42 H 0.042 0.958 43 H 0.215 0.785 44 H 0.066 0.934 45 H 0.100 0.900 46 H 0.093 0.907 47 H 0.094 0.906 48 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -11.681 -12.945 -21.824 27.934 hybrid contribution 1.116 1.289 1.354 2.177 sum -10.566 -11.656 -20.470 25.817 Atomic orbital electron populations 1.22193 0.92850 1.04085 1.03856 1.22113 0.96273 0.74116 1.06166 1.48302 1.43592 1.13364 0.99379 1.73924 1.18720 1.05249 1.15417 1.23252 1.00594 0.93872 0.92610 1.20250 1.01893 0.93894 0.96805 1.22978 1.09329 0.93603 0.94327 1.16723 0.77580 0.85435 0.81249 1.90761 1.50427 1.24831 1.74725 1.47946 1.69179 1.10180 1.04853 1.21572 0.98642 0.88695 0.91456 1.22464 0.98058 0.99316 0.99601 1.21300 0.85608 0.93852 0.90432 1.86358 1.37434 1.61427 1.51595 1.21308 0.94623 0.92989 0.90969 1.42286 1.37731 1.23279 1.34202 1.19197 1.06763 1.04764 1.06410 0.91176 1.24734 0.99358 0.97060 0.99668 1.69633 1.39176 1.11290 1.38109 0.86171 0.81493 0.77306 0.81090 1.21694 1.21723 1.20780 1.21846 0.98699 0.98634 0.96269 1.22332 0.98651 0.83376 0.98477 1.74294 1.15676 1.04507 1.14850 0.91190 0.91376 0.89379 0.87129 0.86956 0.90112 0.90719 0.88414 0.89034 0.90679 0.88962 0.90882 0.76800 0.95433 0.95756 0.78496 0.93407 0.90022 0.90727 0.90553 0.86680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.77 10.24 37.16 0.38 -0.39 16 2 C 0.13 0.71 7.24 -4.04 -0.03 0.68 16 3 N -0.14 -1.45 3.94 -10.61 -0.04 -1.49 16 4 N -0.29 -3.33 12.01 33.92 0.41 -2.92 16 5 C 0.06 0.73 7.39 -81.88 -0.61 0.13 16 6 C -0.07 -0.68 10.06 36.01 0.36 -0.32 16 7 C -0.04 -0.54 6.88 -82.68 -0.57 -1.10 16 8 C 0.61 9.02 7.69 -12.35 -0.10 8.93 16 9 O -0.53 -8.85 14.59 5.32 0.08 -8.77 16 10 N -0.59 -8.41 2.98 -174.16 -0.52 -8.93 16 11 C 0.12 1.73 6.18 -3.93 -0.02 1.70 16 12 C -0.16 -2.48 4.91 -26.83 -0.13 -2.62 16 13 C 0.13 2.09 0.71 -90.58 -0.06 2.03 16 14 O -0.56 -9.37 11.71 -35.23 -0.41 -9.78 16 15 C 0.13 2.56 5.40 -4.05 -0.02 2.53 16 16 N -0.73 -17.63 5.07 -59.91 -0.30 -17.93 16 17 C -0.24 -6.60 9.99 -15.05 -0.15 -6.75 16 18 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 19 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 20 N -0.93 -27.43 13.06 55.49 0.72 -26.70 16 21 Si 0.91 22.20 29.55 -169.99 -5.02 17.17 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 C -0.12 -1.59 5.11 -26.61 -0.14 -1.73 16 26 C 0.09 1.24 5.90 -3.71 -0.02 1.21 16 27 N -0.25 -2.90 8.65 33.42 0.29 -2.61 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.09 0.19 8.14 -51.93 -0.42 -0.24 16 31 H 0.11 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.10 1.06 6.67 -51.93 -0.35 0.71 16 36 H 0.09 1.37 7.00 -51.93 -0.36 1.01 16 37 H 0.07 1.07 7.81 -51.93 -0.41 0.67 16 38 H 0.09 1.62 6.82 -51.93 -0.35 1.27 16 39 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.38 6.45 7.85 45.56 0.36 6.81 16 41 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.38 9.36 5.58 -40.82 -0.23 9.13 16 44 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 45 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 46 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 47 H 0.08 1.04 7.81 -51.93 -0.41 0.63 16 48 H 0.12 1.41 4.17 -65.01 -0.27 1.14 16 LS Contribution 383.63 15.07 5.78 5.78 Total: -1.00 -33.07 383.63 -6.86 -39.93 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: -6.64 Total: 12.39 kcal Atomic # 6 Polarization: 5.07 SS G_CDS: -1.20 Total: 3.87 kcal Atomic # 7 Polarization: -61.15 SS G_CDS: 0.56 Total: -60.59 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: -0.33 Total: -18.55 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.07 -6.86 -39.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281643917.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.807 kcal (2) G-P(sol) polarization free energy of solvation -33.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds