Wall clock time and date at job start Tue Mar 31 2020 20:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46504 * 109.47100 * 2 1 4 4 N 1.28518 * 124.44417 * 270.27400 * 3 2 1 5 5 C 1.31125 * 109.05867 * 180.21364 * 4 3 2 6 6 C 1.50700 * 127.11217 * 179.82952 * 5 4 3 7 7 C 1.40923 * 105.77882 * 359.56697 * 5 4 3 8 8 C 1.47804 * 127.24015 * 180.29830 * 7 5 4 9 9 O 1.21553 * 119.99781 * 6.23620 * 8 7 5 10 10 N 1.34772 * 120.00083 * 186.23860 * 8 7 5 11 11 C 1.46928 * 120.63236 * 186.49440 * 10 8 7 12 12 C 1.52755 * 109.00753 * 233.58478 * 11 10 8 13 13 C 1.53048 * 109.38448 * 305.58414 * 12 11 10 14 14 O 1.42902 * 109.44691 * 301.23055 * 13 12 11 15 15 C 1.52991 * 109.46192 * 181.26496 * 13 12 11 16 16 N 1.46497 * 109.47284 * 59.92946 * 15 13 12 17 17 C 1.36942 * 119.99718 * 180.02562 * 16 15 13 18 18 H 1.07995 * 120.00228 * 0.02562 * 17 16 15 19 19 C 1.38820 * 119.99543 * 180.02562 * 17 16 15 20 20 N 1.31617 * 120.00020 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 119.99768 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47268 * 89.99594 * 21 19 17 23 23 H 1.48501 * 109.47293 * 210.00077 * 21 19 17 24 24 H 1.48509 * 109.47220 * 330.00110 * 21 19 17 25 25 C 1.53039 * 109.53477 * 61.23866 * 13 12 11 26 26 C 1.46929 * 120.63211 * 6.76897 * 10 8 7 27 27 N 1.28592 * 124.44135 * 89.99636 * 3 2 1 28 28 H 1.09007 * 109.47053 * 299.99912 * 1 2 3 29 29 H 1.08992 * 109.47268 * 59.99969 * 1 2 3 30 30 H 1.09001 * 109.46957 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47342 * 239.99597 * 2 1 3 32 32 H 1.09005 * 109.47137 * 119.99751 * 2 1 3 33 33 H 1.08995 * 109.47366 * 269.68603 * 6 5 4 34 34 H 1.09001 * 109.47026 * 29.68688 * 6 5 4 35 35 H 1.09003 * 109.47507 * 149.68311 * 6 5 4 36 36 H 1.09001 * 109.58332 * 353.41453 * 11 10 8 37 37 H 1.08997 * 109.58748 * 113.83739 * 11 10 8 38 38 H 1.09001 * 109.56290 * 185.55110 * 12 11 10 39 39 H 1.08996 * 109.36544 * 65.49489 * 12 11 10 40 40 H 0.96704 * 113.99969 * 300.05726 * 14 13 12 41 41 H 1.09001 * 109.47113 * 179.97438 * 15 13 12 42 42 H 1.09001 * 109.46856 * 299.93063 * 15 13 12 43 43 H 0.96997 * 120.00164 * 359.97438 * 16 15 13 44 44 H 0.97005 * 119.99440 * 179.97438 * 20 19 17 45 45 H 1.09001 * 109.49277 * 178.68155 * 25 13 12 46 46 H 1.08996 * 109.49770 * 58.59460 * 25 13 12 47 47 H 1.08996 * 109.58922 * 246.16112 * 26 10 8 48 48 H 1.09003 * 109.58492 * 6.58711 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 7 2.2559 2.0683 -1.0598 5 6 2.6832 3.2581 -0.7120 6 6 3.0826 4.3850 -1.6295 7 6 2.6860 3.2674 0.6972 8 6 3.0798 4.3828 1.5835 9 8 3.3433 5.4710 1.1105 10 7 3.1468 4.1931 2.9162 11 6 3.3973 5.3230 3.8214 12 6 4.5892 4.9886 4.7164 13 6 4.3330 3.6578 5.4275 14 8 3.1362 3.7551 6.2024 15 6 5.5117 3.3367 6.3484 16 7 5.6594 4.4027 7.3424 17 6 6.6557 4.3320 8.2792 18 1 7.3328 3.4906 8.2851 19 6 6.7954 5.3418 9.2214 20 7 5.9705 6.3675 9.2140 21 14 8.1548 5.2458 10.4990 22 1 9.3758 5.9076 9.9732 23 1 7.7161 5.9312 11.7412 24 1 8.4533 3.8221 10.7981 25 6 4.1788 2.5441 4.3892 26 6 2.9767 2.8517 3.4909 27 7 2.2607 2.0669 1.0605 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 4.1475 4.3136 -1.8503 34 1 2.5138 4.3174 -2.5569 35 1 2.8752 5.3391 -1.1449 36 1 3.6196 6.2164 3.2379 37 1 2.5170 5.4977 4.4400 38 1 4.7221 5.7772 5.4571 39 1 5.4883 4.9073 4.1055 40 1 3.1626 4.4425 6.8821 41 1 5.3292 2.3891 6.8553 42 1 6.4246 3.2619 5.7574 43 1 5.0521 5.1589 7.3364 44 1 6.0679 7.0729 9.8726 45 1 4.0197 1.5929 4.8971 46 1 5.0817 2.4859 3.7814 47 1 2.0614 2.8207 4.0820 48 1 2.9215 2.1150 2.6894 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281643917.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:32 Heat of formation + Delta-G solvation = 20.769722 kcal Electronic energy + Delta-G solvation = -30198.971023 eV Core-core repulsion = 26098.399204 eV Total energy + Delta-G solvation = -4100.571819 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.78592 -41.37177 -39.69421 -36.94065 -36.07582 -35.78177 -34.26361 -33.42391 -32.62951 -32.23362 -31.79020 -29.10715 -28.29580 -26.41894 -25.50110 -24.38735 -23.65370 -23.12430 -22.14193 -21.61259 -20.42265 -19.46203 -18.42768 -18.10768 -17.81299 -17.25918 -17.08609 -16.71441 -16.20068 -15.85434 -15.62205 -15.48761 -15.19559 -14.95969 -14.86520 -14.65798 -14.47902 -14.29481 -14.08848 -13.86965 -13.58353 -13.41154 -13.22985 -13.02070 -13.00219 -12.77917 -12.73418 -12.60688 -12.46282 -12.27818 -12.25755 -12.10467 -12.00544 -11.79565 -11.44697 -11.29578 -11.01782 -10.88791 -10.76183 -10.29689 -9.69045 -9.02787 -7.96984 -5.25500 0.13917 0.80849 1.14205 1.47763 1.48504 1.56919 1.85494 2.06428 2.54589 2.75217 3.24528 3.40325 3.45413 3.68153 3.69559 3.80716 3.88626 3.92814 3.96479 4.03070 4.21010 4.24957 4.32108 4.40791 4.43863 4.54997 4.59931 4.69951 4.75155 4.76261 4.79153 4.81380 4.85542 4.92615 4.95445 4.97828 5.06561 5.12518 5.16929 5.27825 5.33059 5.46129 5.49318 5.70440 6.24338 6.25478 6.72517 6.88234 7.09164 7.32574 8.03816 8.28510 9.25832 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.021619 B = 0.002482 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.835141 B =11277.227926 C =11971.023660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.117 3.883 3 N -0.131 5.131 4 N -0.295 5.295 5 C 0.050 3.950 6 C -0.067 4.067 7 C -0.067 4.067 8 C 0.603 3.397 9 O -0.556 6.556 10 N -0.591 5.591 11 C 0.125 3.875 12 C -0.147 4.147 13 C 0.138 3.862 14 O -0.560 6.560 15 C 0.129 3.871 16 N -0.737 5.737 17 C -0.247 4.247 18 H 0.072 0.928 19 C -0.070 4.070 20 N -0.964 5.964 21 Si 0.971 3.029 22 H -0.288 1.288 23 H -0.294 1.294 24 H -0.271 1.271 25 C -0.111 4.111 26 C 0.103 3.897 27 N -0.245 5.245 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.117 0.883 31 H 0.133 0.867 32 H 0.132 0.868 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.381 0.619 41 H 0.025 0.975 42 H 0.025 0.975 43 H 0.376 0.624 44 H 0.252 0.748 45 H 0.095 0.905 46 H 0.080 0.920 47 H 0.074 0.926 48 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.575 -13.964 -22.299 28.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.000 4.000 3 N -0.035 5.035 4 N -0.137 5.137 5 C -0.112 4.112 6 C -0.126 4.126 7 C -0.227 4.227 8 C 0.390 3.610 9 O -0.434 6.434 10 N -0.323 5.323 11 C 0.003 3.997 12 C -0.185 4.185 13 C 0.096 3.904 14 O -0.367 6.367 15 C 0.002 3.998 16 N -0.382 5.382 17 C -0.378 4.378 18 H 0.090 0.910 19 C -0.262 4.262 20 N -0.615 5.615 21 Si 0.800 3.200 22 H -0.216 1.216 23 H -0.221 1.221 24 H -0.196 1.196 25 C -0.150 4.150 26 C -0.020 4.020 27 N -0.094 5.094 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.135 0.865 31 H 0.151 0.849 32 H 0.150 0.850 33 H 0.107 0.893 34 H 0.111 0.889 35 H 0.102 0.898 36 H 0.104 0.896 37 H 0.098 0.902 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.230 0.770 41 H 0.043 0.957 42 H 0.043 0.957 43 H 0.210 0.790 44 H 0.061 0.939 45 H 0.114 0.886 46 H 0.099 0.901 47 H 0.092 0.908 48 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -11.947 -15.256 -22.847 29.958 hybrid contribution 1.146 1.858 1.594 2.703 sum -10.802 -13.398 -21.253 27.347 Atomic orbital electron populations 1.22173 0.92070 1.05583 1.02550 1.22688 0.96890 0.72063 1.08320 1.48885 1.41703 1.14272 0.98639 1.73937 1.18901 1.05107 1.15785 1.23576 1.00506 0.94626 0.92513 1.20276 1.02688 0.92571 0.97055 1.22756 1.11398 0.93918 0.94618 1.16942 0.77048 0.85638 0.81394 1.90740 1.51519 1.25935 1.75161 1.47987 1.69071 1.10433 1.04782 1.21427 0.98105 0.88892 0.91264 1.22324 0.98451 0.98630 0.99124 1.21257 0.84122 0.94856 0.90118 1.86362 1.37420 1.61346 1.51591 1.21443 0.96200 0.91562 0.90580 1.42411 1.37009 1.24185 1.34581 1.19555 1.07096 1.04489 1.06702 0.90983 1.25497 1.01763 0.97090 1.01883 1.69773 1.40860 1.11946 1.38890 0.85183 0.78769 0.77597 0.78443 1.21557 1.22102 1.19639 1.21856 0.99400 0.98086 0.95650 1.22342 0.98048 0.83024 0.98582 1.74170 1.15540 1.04150 1.15563 0.92630 0.92458 0.86478 0.84926 0.84951 0.89304 0.88856 0.89753 0.89551 0.90245 0.90962 0.91464 0.77008 0.95671 0.95706 0.79033 0.93896 0.88646 0.90118 0.90752 0.85390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.07 10.24 71.98 0.74 -0.33 16 2 C 0.12 0.91 7.24 86.38 0.63 1.53 16 3 N -0.13 -2.36 3.94 -187.48 -0.74 -3.09 16 4 N -0.30 -6.22 12.01 -46.59 -0.56 -6.78 16 5 C 0.05 1.18 7.39 43.32 0.32 1.50 16 6 C -0.07 -1.27 10.06 71.24 0.72 -0.55 16 7 C -0.07 -1.72 6.88 42.24 0.29 -1.43 16 8 C 0.60 17.86 7.69 86.77 0.67 18.53 16 9 O -0.56 -18.73 14.59 -3.88 -0.06 -18.79 16 10 N -0.59 -16.54 2.98 -823.21 -2.45 -19.00 16 11 C 0.13 3.67 6.18 86.22 0.53 4.20 16 12 C -0.15 -4.71 4.91 30.53 0.15 -4.56 16 13 C 0.14 4.37 0.71 -10.77 -0.01 4.37 16 14 O -0.56 -18.39 11.71 -148.98 -1.74 -20.13 16 15 C 0.13 5.06 5.40 86.38 0.47 5.52 16 16 N -0.74 -35.85 5.07 -343.46 -1.74 -37.59 16 17 C -0.25 -13.52 9.99 84.03 0.84 -12.68 16 18 H 0.07 3.84 7.83 -2.91 -0.02 3.82 16 19 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 20 N -0.96 -57.34 13.06 21.65 0.28 -57.06 16 21 Si 0.97 45.65 29.55 68.60 2.03 47.67 16 22 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 23 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 24 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 25 C -0.11 -2.88 5.11 30.67 0.16 -2.72 16 26 C 0.10 2.52 5.90 86.36 0.51 3.03 16 27 N -0.25 -5.38 8.65 -48.16 -0.42 -5.79 16 28 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 29 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.12 0.10 8.14 -2.39 -0.02 0.08 16 31 H 0.13 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.13 0.53 8.14 -2.38 -0.02 0.51 16 33 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.08 1.83 6.67 -2.39 -0.02 1.82 16 36 H 0.09 2.64 7.00 -2.39 -0.02 2.62 16 37 H 0.08 2.26 7.81 -2.39 -0.02 2.24 16 38 H 0.07 2.62 6.82 -2.39 -0.02 2.61 16 39 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 40 H 0.38 12.92 7.85 -74.05 -0.58 12.34 16 41 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.38 18.85 5.58 -92.71 -0.52 18.33 16 44 H 0.25 14.61 8.31 -92.70 -0.77 13.84 16 45 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 46 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 47 H 0.07 1.89 7.81 -2.39 -0.02 1.87 16 48 H 0.13 2.88 4.17 -19.31 -0.08 2.80 16 Total: -1.00 -70.30 383.63 0.90 -69.40 By element: Atomic # 1 Polarization: 38.39 SS G_CDS: -0.17 Total: 38.22 kcal Atomic # 6 Polarization: 6.47 SS G_CDS: 6.47 Total: 12.94 kcal Atomic # 7 Polarization: -123.69 SS G_CDS: -5.62 Total: -129.32 kcal Atomic # 8 Polarization: -37.11 SS G_CDS: -1.80 Total: -38.91 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.67 kcal Total: -70.30 0.90 -69.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281643917.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.170 kcal (2) G-P(sol) polarization free energy of solvation -70.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds