Wall clock time and date at job start Tue Mar 31 2020 19:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47122 * 2 1 4 4 C 1.52998 * 109.47241 * 120.00401 * 2 1 3 5 5 C 1.52999 * 109.47306 * 184.99769 * 4 2 1 6 6 N 1.46497 * 109.46992 * 180.02562 * 5 4 2 7 7 C 1.34777 * 119.99525 * 179.97438 * 6 5 4 8 8 O 1.21283 * 120.00463 * 0.02562 * 7 6 5 9 9 C 1.50700 * 119.99675 * 179.72583 * 7 6 5 10 10 C 1.50703 * 109.47148 * 180.28037 * 9 7 6 11 11 C 1.39870 * 125.90067 * 124.71359 * 10 9 7 12 12 C 1.35319 * 107.91734 * 179.86228 * 11 10 9 13 13 N 1.34947 * 107.74830 * 0.39399 * 12 11 10 14 14 C 1.46496 * 126.03919 * 179.74528 * 13 12 11 15 15 N 1.30839 * 125.89588 * 305.02417 * 10 9 7 16 16 N 1.46905 * 109.46741 * 240.00565 * 2 1 3 17 17 C 1.46898 * 110.99969 * 85.00303 * 16 2 1 18 18 C 1.50706 * 109.46790 * 180.02562 * 17 16 2 19 19 O 1.21286 * 119.99986 * 359.97438 * 18 17 16 20 20 N 1.34778 * 119.99540 * 180.02562 * 18 17 16 21 21 C 1.37094 * 119.99366 * 179.97438 * 20 18 17 22 22 H 1.08001 * 120.00554 * 0.02562 * 21 20 18 23 23 C 1.38958 * 119.99833 * 179.97438 * 21 20 18 24 24 N 1.31413 * 119.99721 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00021 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47011 * 0.02562 * 25 23 21 27 27 H 1.48504 * 109.46836 * 119.99991 * 25 23 21 28 28 H 1.48496 * 109.46833 * 240.00040 * 25 23 21 29 29 H 1.08996 * 109.47315 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46818 * 299.99860 * 1 2 3 31 31 H 1.09003 * 109.47107 * 59.99448 * 1 2 3 32 32 H 1.09009 * 109.46771 * 64.99558 * 4 2 1 33 33 H 1.08993 * 109.47193 * 305.00031 * 4 2 1 34 34 H 1.08995 * 109.46838 * 59.99948 * 5 4 2 35 35 H 1.09001 * 109.46617 * 300.00283 * 5 4 2 36 36 H 0.97000 * 120.00580 * 0.02562 * 6 5 4 37 37 H 1.09009 * 109.47352 * 300.27556 * 9 7 6 38 38 H 1.08998 * 109.47585 * 60.27844 * 9 7 6 39 39 H 1.07999 * 126.03871 * 359.97438 * 11 10 9 40 40 H 1.07999 * 126.12438 * 180.14304 * 12 11 10 41 41 H 1.09003 * 109.47368 * 269.98270 * 14 13 12 42 42 H 1.09001 * 109.46966 * 29.97757 * 14 13 12 43 43 H 1.08996 * 109.46981 * 149.97622 * 14 13 12 44 44 H 1.00899 * 110.99799 * 208.95663 * 16 2 1 45 45 H 1.09000 * 109.47057 * 299.99408 * 17 16 2 46 46 H 1.08989 * 109.47456 * 59.99875 * 17 16 2 47 47 H 0.96995 * 120.00556 * 359.97438 * 20 18 17 48 48 H 0.97001 * 119.99651 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.6134 1.3136 6 7 4.0532 -1.3046 2.5094 7 6 5.3741 -1.3410 2.7744 8 8 6.1585 -0.8011 2.0232 9 6 5.8760 -2.0467 4.0077 10 6 7.3775 -1.9362 4.0738 11 6 8.1158 -1.4222 5.1449 12 6 9.4274 -1.4980 4.8209 13 7 9.5156 -2.0326 3.5849 14 6 10.7525 -2.2887 2.8429 15 7 8.2154 -2.2992 3.1368 16 7 2.0196 -0.6924 -1.1996 17 6 2.0824 0.2228 -2.3469 18 6 2.5872 -0.5216 -3.5561 19 8 2.8675 -1.6985 -3.4704 20 7 2.7281 0.1208 -4.7325 21 6 3.1878 -0.5562 -5.8324 22 1 3.4366 -1.6044 -5.7564 23 6 3.3326 0.1059 -7.0455 24 7 3.0285 1.3810 -7.1384 25 14 3.9583 -0.8168 -8.5444 26 1 4.2258 -2.2311 -8.1790 27 1 2.9339 -0.7687 -9.6184 28 1 5.2120 -0.1841 -9.0273 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.7516 -1.7716 1.2054 33 1 1.6055 -0.2619 2.1369 34 1 3.8532 0.4368 1.3573 35 1 3.9994 -1.0729 0.4258 36 1 3.4260 -1.7368 3.1100 37 1 5.4385 -1.5859 4.8935 38 1 5.5906 -3.0978 3.9665 39 1 7.7106 -1.0351 6.0681 40 1 10.2551 -1.1829 5.4389 41 1 11.0076 -1.4116 2.2480 42 1 11.5599 -2.4993 3.5442 43 1 10.6104 -3.1456 2.1845 44 1 2.9172 -1.1205 -1.0289 45 1 1.0870 0.6165 -2.5525 46 1 2.7588 1.0463 -2.1182 47 1 2.5043 1.0621 -4.8010 48 1 3.1299 1.8433 -7.9851 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281714067.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:25 Heat of formation + Delta-G solvation = 2.414371 kcal Electronic energy + Delta-G solvation = -27928.007425 eV Core-core repulsion = 23826.639658 eV Total energy + Delta-G solvation = -4101.367766 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.41257 -39.65135 -38.42111 -37.11877 -34.75683 -34.06709 -33.83767 -31.67051 -31.11369 -30.72452 -30.02452 -28.67175 -26.40185 -25.97307 -24.08084 -23.13064 -21.42126 -21.13096 -20.38946 -19.65500 -19.17800 -17.84247 -17.24316 -17.13807 -16.38952 -16.04568 -15.76191 -15.60765 -15.21116 -15.13130 -14.48220 -14.31657 -14.07874 -13.94635 -13.76318 -13.60843 -13.51847 -13.13429 -12.97513 -12.78568 -12.60020 -12.45782 -12.24004 -12.10579 -11.82210 -11.64228 -11.50448 -11.23997 -11.18685 -11.03586 -10.74958 -10.72388 -10.30034 -10.17151 -9.93383 -9.46657 -9.42914 -9.16508 -8.77020 -8.38231 -8.01248 -7.90110 -6.36541 -3.76909 1.70920 2.30195 2.47949 2.59904 3.14435 3.20415 3.30406 3.38315 3.97233 4.14332 4.17164 4.37546 4.47666 4.57387 4.66387 4.77356 4.88579 4.90853 4.94470 5.01950 5.12568 5.15390 5.18479 5.30534 5.39880 5.43637 5.47642 5.55331 5.60504 5.74904 5.78090 5.86483 5.89843 5.96707 6.05376 6.11121 6.30375 6.31142 6.39449 6.40376 6.79352 7.29838 7.36958 7.55695 7.60693 7.72690 8.12362 8.16673 8.67225 9.23587 9.60362 10.12080 10.81439 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009759 B = 0.002112 C = 0.001784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2868.551153 B =13254.652512 C =15692.041070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.086 3.914 3 H 0.044 0.956 4 C -0.131 4.131 5 C 0.114 3.886 6 N -0.731 5.731 7 C 0.511 3.489 8 O -0.518 6.518 9 C -0.057 4.057 10 C 0.078 3.922 11 C -0.267 4.267 12 C 0.049 3.951 13 N -0.376 5.376 14 C 0.101 3.899 15 N -0.260 5.260 16 N -0.666 5.666 17 C 0.050 3.950 18 C 0.442 3.558 19 O -0.582 6.582 20 N -0.565 5.565 21 C -0.297 4.297 22 H 0.103 0.897 23 C 0.020 3.980 24 N -0.903 5.903 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.282 1.282 29 H 0.062 0.938 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.400 0.600 37 H 0.112 0.888 38 H 0.110 0.890 39 H 0.147 0.853 40 H 0.173 0.827 41 H 0.075 0.925 42 H 0.086 0.914 43 H 0.089 0.911 44 H 0.349 0.651 45 H 0.086 0.914 46 H 0.043 0.957 47 H 0.392 0.608 48 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.889 -2.303 28.896 29.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.025 4.025 3 H 0.062 0.938 4 C -0.170 4.170 5 C -0.010 4.010 6 N -0.384 5.384 7 C 0.296 3.704 8 O -0.393 6.393 9 C -0.099 4.099 10 C -0.089 4.089 11 C -0.297 4.297 12 C -0.097 4.097 13 N -0.158 5.158 14 C -0.040 4.040 15 N -0.082 5.082 16 N -0.301 5.301 17 C -0.083 4.083 18 C 0.227 3.773 19 O -0.466 6.466 20 N -0.202 5.202 21 C -0.426 4.426 22 H 0.121 0.879 23 C -0.181 4.181 24 N -0.544 5.544 25 Si 0.756 3.244 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.208 1.208 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.100 0.900 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.234 0.766 37 H 0.130 0.870 38 H 0.128 0.872 39 H 0.165 0.835 40 H 0.190 0.810 41 H 0.094 0.906 42 H 0.105 0.895 43 H 0.108 0.892 44 H 0.171 0.829 45 H 0.104 0.896 46 H 0.061 0.939 47 H 0.225 0.775 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.368 -3.355 26.800 27.750 hybrid contribution 0.648 1.047 0.416 1.300 sum 7.016 -2.307 27.216 28.200 Atomic orbital electron populations 1.21784 0.94297 1.02486 1.01104 1.21459 0.96215 0.95812 0.89022 0.93785 1.21974 0.93737 1.02797 0.98452 1.21446 0.94154 0.97422 0.87961 1.45919 1.07354 1.57802 1.27356 1.20406 0.82175 0.80729 0.87117 1.90789 1.55019 1.44384 1.49074 1.20006 0.89055 1.02991 0.97848 1.21515 0.94778 0.99987 0.92610 1.21314 0.92137 1.13959 1.02277 1.22494 0.99054 1.00052 0.88102 1.48564 1.06051 1.48343 1.12841 1.21865 0.81546 1.03473 0.97139 1.77484 0.86735 1.22838 1.21130 1.60212 1.34995 1.32106 1.02802 1.21723 1.01239 0.93963 0.91365 1.19832 0.84801 0.88203 0.84448 1.90522 1.55189 1.16172 1.84751 1.41868 1.57897 1.12416 1.08015 1.19757 1.39671 0.96439 0.86778 0.87892 1.25264 0.97774 0.95800 0.99237 1.69625 1.48903 1.08864 1.27030 0.85801 0.78195 0.79645 0.80714 1.19224 1.20775 1.20795 0.91853 0.92899 0.92440 0.90039 0.90653 0.91616 0.91019 0.76642 0.86976 0.87218 0.83539 0.81030 0.90614 0.89538 0.89183 0.82895 0.89591 0.93863 0.77479 0.91989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.41 37.16 0.35 -1.19 16 2 C 0.09 1.04 2.65 -67.71 -0.18 0.86 16 3 H 0.04 0.53 7.80 -51.93 -0.40 0.12 16 4 C -0.13 -1.25 4.92 -26.73 -0.13 -1.39 16 5 C 0.11 1.31 5.50 -4.04 -0.02 1.29 16 6 N -0.73 -6.96 5.56 -60.30 -0.33 -7.30 16 7 C 0.51 6.24 7.82 -10.98 -0.09 6.16 16 8 O -0.52 -9.19 15.56 5.55 0.09 -9.11 16 9 C -0.06 -0.49 6.28 -29.03 -0.18 -0.67 16 10 C 0.08 0.92 6.02 -82.40 -0.50 0.42 16 11 C -0.27 -2.50 10.72 -40.01 -0.43 -2.93 16 12 C 0.05 0.42 11.49 -17.22 -0.20 0.22 16 13 N -0.38 -4.07 4.01 -68.16 -0.27 -4.35 16 14 C 0.10 0.69 11.47 59.84 0.69 1.37 16 15 N -0.26 -3.70 11.92 33.67 0.40 -3.30 16 16 N -0.67 -11.08 5.93 -107.99 -0.64 -11.73 16 17 C 0.05 0.92 5.97 -4.97 -0.03 0.89 16 18 C 0.44 10.91 7.82 -10.98 -0.09 10.82 16 19 O -0.58 -16.50 15.78 5.55 0.09 -16.41 16 20 N -0.57 -14.90 5.29 -10.96 -0.06 -14.96 16 21 C -0.30 -8.57 9.68 -14.93 -0.14 -8.71 16 22 H 0.10 3.13 7.16 -52.49 -0.38 2.75 16 23 C 0.02 0.57 5.50 -17.46 -0.10 0.47 16 24 N -0.90 -25.24 13.05 55.50 0.72 -24.52 16 25 Si 0.93 21.71 29.55 -169.99 -5.02 16.68 16 26 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 27 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 28 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.69 7.45 -51.93 -0.39 0.30 16 32 H 0.08 0.79 8.14 -51.92 -0.42 0.37 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.07 1.04 6.43 -51.93 -0.33 0.71 16 36 H 0.40 2.31 8.47 -40.82 -0.35 1.96 16 37 H 0.11 0.55 8.12 -51.92 -0.42 0.12 16 38 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.15 0.95 8.06 -52.49 -0.42 0.53 16 40 H 0.17 0.77 8.06 -52.49 -0.42 0.34 16 41 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 43 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.35 6.20 6.17 -39.29 -0.24 5.96 16 45 H 0.09 1.46 7.44 -51.93 -0.39 1.08 16 46 H 0.04 0.74 8.05 -51.94 -0.42 0.32 16 47 H 0.39 9.86 7.90 -40.82 -0.32 9.54 16 48 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 405.91 15.07 6.12 6.12 Total: -1.00 -39.66 405.91 -7.38 -47.04 By element: Atomic # 1 Polarization: 21.62 SS G_CDS: -7.42 Total: 14.20 kcal Atomic # 6 Polarization: 8.67 SS G_CDS: -1.04 Total: 7.62 kcal Atomic # 7 Polarization: -65.96 SS G_CDS: -0.18 Total: -66.14 kcal Atomic # 8 Polarization: -25.69 SS G_CDS: 0.17 Total: -25.51 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -39.66 -7.38 -47.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281714067.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.452 kcal (2) G-P(sol) polarization free energy of solvation -39.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds