Wall clock time and date at job start Tue Mar 31 2020 19:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47122 * 2 1 4 4 C 1.52998 * 109.47241 * 120.00401 * 2 1 3 5 5 C 1.52999 * 109.47306 * 184.99769 * 4 2 1 6 6 N 1.46497 * 109.46992 * 180.02562 * 5 4 2 7 7 C 1.34777 * 119.99525 * 179.97438 * 6 5 4 8 8 O 1.21283 * 120.00463 * 0.02562 * 7 6 5 9 9 C 1.50700 * 119.99675 * 179.72583 * 7 6 5 10 10 C 1.50703 * 109.47148 * 180.28037 * 9 7 6 11 11 C 1.39870 * 125.90067 * 124.71359 * 10 9 7 12 12 C 1.35319 * 107.91734 * 179.86228 * 11 10 9 13 13 N 1.34947 * 107.74830 * 0.39399 * 12 11 10 14 14 C 1.46496 * 126.03919 * 179.74528 * 13 12 11 15 15 N 1.30839 * 125.89588 * 305.02417 * 10 9 7 16 16 N 1.46905 * 109.46741 * 240.00565 * 2 1 3 17 17 C 1.46898 * 110.99969 * 85.00303 * 16 2 1 18 18 C 1.50706 * 109.46790 * 180.02562 * 17 16 2 19 19 O 1.21286 * 119.99986 * 359.97438 * 18 17 16 20 20 N 1.34778 * 119.99540 * 180.02562 * 18 17 16 21 21 C 1.37094 * 119.99366 * 179.97438 * 20 18 17 22 22 H 1.08001 * 120.00554 * 0.02562 * 21 20 18 23 23 C 1.38958 * 119.99833 * 179.97438 * 21 20 18 24 24 N 1.31413 * 119.99721 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00021 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47011 * 0.02562 * 25 23 21 27 27 H 1.48504 * 109.46836 * 119.99991 * 25 23 21 28 28 H 1.48496 * 109.46833 * 240.00040 * 25 23 21 29 29 H 1.08996 * 109.47315 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46818 * 299.99860 * 1 2 3 31 31 H 1.09003 * 109.47107 * 59.99448 * 1 2 3 32 32 H 1.09009 * 109.46771 * 64.99558 * 4 2 1 33 33 H 1.08993 * 109.47193 * 305.00031 * 4 2 1 34 34 H 1.08995 * 109.46838 * 59.99948 * 5 4 2 35 35 H 1.09001 * 109.46617 * 300.00283 * 5 4 2 36 36 H 0.97000 * 120.00580 * 0.02562 * 6 5 4 37 37 H 1.09009 * 109.47352 * 300.27556 * 9 7 6 38 38 H 1.08998 * 109.47585 * 60.27844 * 9 7 6 39 39 H 1.07999 * 126.03871 * 359.97438 * 11 10 9 40 40 H 1.07999 * 126.12438 * 180.14304 * 12 11 10 41 41 H 1.09003 * 109.47368 * 269.98270 * 14 13 12 42 42 H 1.09001 * 109.46966 * 29.97757 * 14 13 12 43 43 H 1.08996 * 109.46981 * 149.97622 * 14 13 12 44 44 H 1.00899 * 110.99799 * 208.95663 * 16 2 1 45 45 H 1.09000 * 109.47057 * 299.99408 * 17 16 2 46 46 H 1.08989 * 109.47456 * 59.99875 * 17 16 2 47 47 H 0.96995 * 120.00556 * 359.97438 * 20 18 17 48 48 H 0.97001 * 119.99651 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.6134 1.3136 6 7 4.0532 -1.3046 2.5094 7 6 5.3741 -1.3410 2.7744 8 8 6.1585 -0.8011 2.0232 9 6 5.8760 -2.0467 4.0077 10 6 7.3775 -1.9362 4.0738 11 6 8.1158 -1.4222 5.1449 12 6 9.4274 -1.4980 4.8209 13 7 9.5156 -2.0326 3.5849 14 6 10.7525 -2.2887 2.8429 15 7 8.2154 -2.2992 3.1368 16 7 2.0196 -0.6924 -1.1996 17 6 2.0824 0.2228 -2.3469 18 6 2.5872 -0.5216 -3.5561 19 8 2.8675 -1.6985 -3.4704 20 7 2.7281 0.1208 -4.7325 21 6 3.1878 -0.5562 -5.8324 22 1 3.4366 -1.6044 -5.7564 23 6 3.3326 0.1059 -7.0455 24 7 3.0285 1.3810 -7.1384 25 14 3.9583 -0.8168 -8.5444 26 1 4.2258 -2.2311 -8.1790 27 1 2.9339 -0.7687 -9.6184 28 1 5.2120 -0.1841 -9.0273 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.7516 -1.7716 1.2054 33 1 1.6055 -0.2619 2.1369 34 1 3.8532 0.4368 1.3573 35 1 3.9994 -1.0729 0.4258 36 1 3.4260 -1.7368 3.1100 37 1 5.4385 -1.5859 4.8935 38 1 5.5906 -3.0978 3.9665 39 1 7.7106 -1.0351 6.0681 40 1 10.2551 -1.1829 5.4389 41 1 11.0076 -1.4116 2.2480 42 1 11.5599 -2.4993 3.5442 43 1 10.6104 -3.1456 2.1845 44 1 2.9172 -1.1205 -1.0289 45 1 1.0870 0.6165 -2.5525 46 1 2.7588 1.0463 -2.1182 47 1 2.5043 1.0621 -4.8010 48 1 3.1299 1.8433 -7.9851 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281714067.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:24 Heat of formation + Delta-G solvation = -30.462952 kcal Electronic energy + Delta-G solvation = -27929.433092 eV Core-core repulsion = 23826.639658 eV Total energy + Delta-G solvation = -4102.793434 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.11990 -40.62379 -40.21348 -38.39364 -36.08229 -35.67348 -34.78315 -33.35968 -32.68673 -31.51098 -30.80481 -29.49994 -28.08975 -26.69709 -25.83044 -24.11322 -22.15668 -21.96468 -21.34670 -21.14330 -20.43279 -19.94790 -18.11085 -17.91083 -17.74659 -17.20728 -16.94245 -16.65237 -16.47705 -16.30046 -16.12189 -15.66364 -15.36149 -15.03130 -14.77154 -14.75623 -14.44494 -14.22732 -14.06969 -13.73117 -13.54106 -13.46229 -13.36290 -13.16305 -13.13550 -12.89991 -12.87180 -12.58384 -12.44166 -12.23163 -12.16349 -12.12057 -11.74186 -11.54444 -11.50036 -10.92290 -10.37945 -10.21272 -10.10239 -10.04813 -9.45170 -9.34014 -8.49727 -5.98672 1.01560 1.34017 1.38713 1.53680 1.67796 1.70880 1.77520 2.01357 2.26900 2.34840 2.91714 3.16996 3.48997 3.54295 3.82587 3.88007 3.92609 4.03857 4.12352 4.21595 4.28133 4.37586 4.41187 4.43239 4.48045 4.54180 4.55640 4.60628 4.64459 4.70125 4.84133 4.90892 4.97716 5.02745 5.06321 5.15726 5.21423 5.37953 5.44346 5.48406 5.72099 5.89406 6.12033 6.22079 6.38452 6.56857 6.60648 6.83603 7.09319 7.33074 7.52338 8.07993 8.68064 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009759 B = 0.002112 C = 0.001784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2868.551153 B =13254.652512 C =15692.041070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.081 3.919 3 H 0.050 0.950 4 C -0.115 4.115 5 C 0.118 3.882 6 N -0.713 5.713 7 C 0.505 3.495 8 O -0.583 6.583 9 C -0.051 4.051 10 C 0.060 3.940 11 C -0.281 4.281 12 C 0.052 3.948 13 N -0.389 5.389 14 C 0.094 3.906 15 N -0.329 5.329 16 N -0.680 5.680 17 C 0.065 3.935 18 C 0.436 3.564 19 O -0.624 6.624 20 N -0.573 5.573 21 C -0.335 4.335 22 H 0.077 0.923 23 C -0.014 4.014 24 N -0.920 5.920 25 Si 0.995 3.005 26 H -0.275 1.275 27 H -0.267 1.267 28 H -0.270 1.270 29 H 0.056 0.944 30 H 0.084 0.916 31 H 0.045 0.955 32 H 0.083 0.917 33 H 0.113 0.887 34 H 0.055 0.945 35 H 0.033 0.967 36 H 0.421 0.579 37 H 0.155 0.845 38 H 0.130 0.870 39 H 0.175 0.825 40 H 0.214 0.786 41 H 0.073 0.927 42 H 0.125 0.875 43 H 0.079 0.921 44 H 0.339 0.661 45 H 0.106 0.894 46 H 0.060 0.940 47 H 0.397 0.603 48 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.245 -1.681 31.361 31.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.029 4.029 3 H 0.068 0.932 4 C -0.153 4.153 5 C -0.007 4.007 6 N -0.367 5.367 7 C 0.292 3.708 8 O -0.462 6.462 9 C -0.092 4.092 10 C -0.106 4.106 11 C -0.310 4.310 12 C -0.094 4.094 13 N -0.172 5.172 14 C -0.046 4.046 15 N -0.152 5.152 16 N -0.315 5.315 17 C -0.068 4.068 18 C 0.223 3.777 19 O -0.511 6.511 20 N -0.211 5.211 21 C -0.464 4.464 22 H 0.095 0.905 23 C -0.214 4.214 24 N -0.561 5.561 25 Si 0.818 3.182 26 H -0.199 1.199 27 H -0.192 1.192 28 H -0.195 1.195 29 H 0.075 0.925 30 H 0.103 0.897 31 H 0.064 0.936 32 H 0.102 0.898 33 H 0.131 0.869 34 H 0.074 0.926 35 H 0.052 0.948 36 H 0.259 0.741 37 H 0.173 0.827 38 H 0.148 0.852 39 H 0.193 0.807 40 H 0.231 0.769 41 H 0.092 0.908 42 H 0.143 0.857 43 H 0.098 0.902 44 H 0.160 0.840 45 H 0.124 0.876 46 H 0.078 0.922 47 H 0.230 0.770 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.659 -2.720 29.307 29.972 hybrid contribution 0.866 0.873 -0.295 1.264 sum 6.525 -1.847 29.011 29.793 Atomic orbital electron populations 1.21774 0.92974 1.02392 1.02134 1.21663 0.97079 0.96028 0.88090 0.93167 1.21883 0.91856 1.03016 0.98577 1.21275 0.95517 0.96545 0.87341 1.45754 1.07171 1.56921 1.26812 1.21146 0.82252 0.79855 0.87542 1.90762 1.56712 1.47349 1.51407 1.20178 0.87672 1.04002 0.97330 1.22129 0.96049 0.99577 0.92888 1.21757 0.92353 1.14027 1.02856 1.23251 1.00346 0.98359 0.87423 1.48886 1.05876 1.48587 1.13848 1.22109 0.81461 1.02992 0.98073 1.77384 0.88689 1.25597 1.23516 1.60276 1.34499 1.32597 1.04086 1.21579 1.02146 0.93689 0.89371 1.20936 0.83219 0.88018 0.85507 1.90484 1.56661 1.18313 1.85616 1.41940 1.58285 1.12559 1.08270 1.19701 1.42193 0.95908 0.88614 0.90504 1.26081 0.97201 0.96691 1.01421 1.69681 1.48564 1.09680 1.28153 0.84853 0.78244 0.77938 0.77170 1.19938 1.19248 1.19523 0.92493 0.89705 0.93599 0.89825 0.86896 0.92649 0.94840 0.74061 0.82695 0.85231 0.80739 0.76949 0.90829 0.85682 0.90187 0.84041 0.87581 0.92242 0.76962 0.91229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.65 9.41 71.98 0.68 -1.97 16 2 C 0.08 1.83 2.65 44.91 0.12 1.95 16 3 H 0.05 1.11 7.80 -2.39 -0.02 1.09 16 4 C -0.12 -1.95 4.92 30.59 0.15 -1.80 16 5 C 0.12 2.69 5.50 86.38 0.48 3.17 16 6 N -0.71 -12.81 5.56 -463.07 -2.57 -15.39 16 7 C 0.51 12.35 7.82 87.66 0.69 13.03 16 8 O -0.58 -21.83 15.56 -3.04 -0.05 -21.88 16 9 C -0.05 -0.80 6.28 29.10 0.18 -0.61 16 10 C 0.06 1.39 6.02 43.10 0.26 1.65 16 11 C -0.28 -4.81 10.72 21.99 0.24 -4.57 16 12 C 0.05 0.81 11.49 83.54 0.96 1.77 16 13 N -0.39 -8.47 4.01 -369.57 -1.48 -9.95 16 14 C 0.09 1.29 11.47 127.77 1.47 2.75 16 15 N -0.33 -9.75 11.92 -47.38 -0.56 -10.31 16 16 N -0.68 -22.69 5.93 -495.57 -2.94 -25.63 16 17 C 0.06 2.40 5.97 85.56 0.51 2.91 16 18 C 0.44 22.23 7.82 87.66 0.69 22.91 16 19 O -0.62 -36.95 15.78 -3.05 -0.05 -37.00 16 20 N -0.57 -31.17 5.29 -306.98 -1.62 -32.79 16 21 C -0.33 -19.96 9.68 84.04 0.81 -19.15 16 22 H 0.08 4.91 7.16 -2.91 -0.02 4.88 16 23 C -0.01 -0.80 5.50 84.93 0.47 -0.33 16 24 N -0.92 -51.36 13.05 21.67 0.28 -51.08 16 25 Si 0.99 44.71 29.55 68.60 2.03 46.74 16 26 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 27 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 28 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 29 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 31 H 0.04 1.00 7.45 -2.39 -0.02 0.99 16 32 H 0.08 1.43 8.14 -2.38 -0.02 1.42 16 33 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.03 1.03 6.43 -2.39 -0.02 1.02 16 36 H 0.42 3.75 8.47 -92.71 -0.79 2.96 16 37 H 0.16 0.98 8.12 -2.38 -0.02 0.96 16 38 H 0.13 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.18 1.75 8.06 -2.91 -0.02 1.73 16 40 H 0.21 1.22 8.06 -2.91 -0.02 1.19 16 41 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 44 H 0.34 12.52 6.17 -89.69 -0.55 11.97 16 45 H 0.11 3.52 7.44 -2.39 -0.02 3.50 16 46 H 0.06 2.02 8.05 -2.39 -0.02 2.00 16 47 H 0.40 20.40 7.90 -92.71 -0.73 19.67 16 48 H 0.28 14.44 8.31 -92.71 -0.77 13.67 16 Total: -1.00 -92.55 405.91 -0.35 -92.90 By element: Atomic # 1 Polarization: 43.75 SS G_CDS: -1.07 Total: 42.68 kcal Atomic # 6 Polarization: 14.03 SS G_CDS: 7.69 Total: 21.72 kcal Atomic # 7 Polarization: -136.26 SS G_CDS: -8.90 Total: -145.16 kcal Atomic # 8 Polarization: -58.78 SS G_CDS: -0.10 Total: -58.88 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -92.55 -0.35 -92.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281714067.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.436 kcal (2) G-P(sol) polarization free energy of solvation -92.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds