Wall clock time and date at job start Tue Mar 31 2020 19:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.46886 * 2 1 4 4 N 1.46905 * 109.46850 * 119.99222 * 2 1 3 5 5 C 1.46900 * 111.00358 * 275.00204 * 4 2 1 6 6 C 1.50692 * 109.47081 * 180.02562 * 5 4 2 7 7 O 1.21297 * 120.00213 * 0.02562 * 6 5 4 8 8 N 1.34775 * 120.00198 * 179.97438 * 6 5 4 9 9 C 1.37096 * 120.00396 * 179.97438 * 8 6 5 10 10 H 1.08002 * 120.00168 * 0.02562 * 9 8 6 11 11 C 1.38954 * 120.00372 * 180.02562 * 9 8 6 12 12 N 1.31413 * 119.99701 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 119.99964 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47288 * 90.00410 * 13 11 9 15 15 H 1.48504 * 109.47031 * 209.99834 * 13 11 9 16 16 H 1.48494 * 109.47583 * 329.99718 * 13 11 9 17 17 C 1.52996 * 109.47370 * 239.99646 * 2 1 3 18 18 H 1.08995 * 109.47101 * 175.00240 * 17 2 1 19 19 C 1.53004 * 109.47018 * 295.00091 * 17 2 1 20 20 N 1.46499 * 109.47113 * 55.00145 * 17 2 1 21 21 C 1.34777 * 120.00125 * 155.00356 * 20 17 2 22 22 O 1.21282 * 119.99930 * 359.97438 * 21 20 17 23 23 C 1.50696 * 119.99855 * 179.97438 * 21 20 17 24 24 C 1.52999 * 109.47018 * 179.97438 * 23 21 20 25 25 C 1.50704 * 109.47417 * 180.02562 * 24 23 21 26 26 C 1.34664 * 126.58651 * 275.03863 * 25 24 23 27 27 N 1.34134 * 108.01786 * 179.74146 * 26 25 24 28 28 C 1.30496 * 109.25675 * 0.37372 * 27 26 25 29 29 N 1.35047 * 108.70161 * 359.62603 * 28 27 26 30 30 H 0.96997 * 126.40535 * 180.25138 * 29 28 27 31 31 H 1.09006 * 109.47314 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47660 * 300.00211 * 1 2 3 33 33 H 1.08999 * 109.47157 * 60.00338 * 1 2 3 34 34 H 1.00903 * 110.99064 * 151.04494 * 4 2 1 35 35 H 1.09000 * 109.46708 * 300.00573 * 5 4 2 36 36 H 1.08998 * 109.46865 * 60.00101 * 5 4 2 37 37 H 0.97001 * 119.99678 * 359.97438 * 8 6 5 38 38 H 0.96996 * 119.99874 * 180.02562 * 12 11 9 39 39 H 1.09000 * 109.46774 * 180.02562 * 19 17 2 40 40 H 1.09006 * 109.46858 * 299.99996 * 19 17 2 41 41 H 1.08995 * 109.47063 * 60.00126 * 19 17 2 42 42 H 0.97010 * 120.00024 * 334.99665 * 20 17 2 43 43 H 1.08999 * 109.47441 * 59.99731 * 23 21 20 44 44 H 1.08998 * 109.47505 * 299.99456 * 23 21 20 45 45 H 1.08992 * 109.47476 * 59.99861 * 24 23 21 46 46 H 1.09004 * 109.47205 * 299.99755 * 24 23 21 47 47 H 1.07998 * 125.99171 * 359.92955 * 26 25 24 48 48 H 1.08002 * 125.65353 * 179.89694 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6924 1.1996 5 6 2.0823 0.2228 2.3470 6 6 2.5883 -0.5212 3.5558 7 8 2.8695 -1.6980 3.4699 8 7 2.7294 0.1212 4.7322 9 6 3.1892 -0.5558 5.8321 10 1 3.4388 -1.6038 5.7559 11 6 3.3342 0.1063 7.0451 12 7 3.0300 1.3814 7.1381 13 14 3.9614 -0.8160 8.5435 14 1 5.4424 -0.7217 8.5987 15 1 3.3812 -0.2168 9.7722 16 1 3.5592 -2.2424 8.4511 17 6 2.0400 -0.7213 -1.2491 18 1 3.1263 -0.6444 -1.2950 19 6 1.6353 -2.1955 -1.1878 20 7 1.4559 -0.1038 -2.4423 21 6 2.0913 -0.1940 -3.6275 22 8 3.1469 -0.7860 -3.7061 23 6 1.4902 0.4408 -4.8549 24 6 2.4045 0.1938 -6.0566 25 6 1.8037 0.8291 -7.2840 26 6 0.8817 0.2841 -8.1003 27 7 0.6084 1.1713 -9.0684 28 6 1.3319 2.2422 -8.8876 29 7 2.0897 2.0713 -7.7829 30 1 2.7189 2.7096 -7.4121 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 2.9172 -1.1204 1.0288 35 1 2.7587 1.0464 2.1182 36 1 1.0869 0.6165 2.5525 37 1 2.5056 1.0625 4.8006 38 1 3.1316 1.8437 7.9847 39 1 1.9990 -2.7095 -2.0775 40 1 2.0699 -2.6550 -0.2999 41 1 0.5490 -2.2724 -1.1419 42 1 0.6118 0.3700 -2.3794 43 1 1.3838 1.5136 -4.6942 44 1 0.5106 0.0033 -5.0475 45 1 2.5113 -0.8788 -6.2175 46 1 3.3840 0.6316 -5.8638 47 1 0.4377 -0.6945 -7.9924 48 1 1.3227 3.1214 -9.5147 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282139032.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:26 Heat of formation + Delta-G solvation = -23.430725 kcal Electronic energy + Delta-G solvation = -27907.357618 eV Core-core repulsion = 23804.869124 eV Total energy + Delta-G solvation = -4102.488494 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.45667 -40.25470 -38.51986 -37.42783 -34.55538 -34.32700 -33.80897 -32.74680 -31.37962 -31.01867 -29.41171 -28.85296 -26.60687 -25.31950 -24.45503 -23.31041 -21.96722 -21.23183 -20.62715 -19.82670 -19.33405 -18.41038 -17.95687 -17.41110 -16.48014 -16.02173 -15.93601 -15.53500 -15.41888 -15.01684 -14.80231 -14.47221 -14.26977 -14.05197 -13.85142 -13.76615 -13.66044 -13.34022 -13.03225 -12.82024 -12.60852 -12.48384 -12.23677 -12.06609 -11.83589 -11.68845 -11.61443 -11.45794 -11.11496 -10.94649 -10.73386 -10.45794 -10.40620 -10.38910 -10.23587 -10.12412 -9.52712 -9.30890 -8.79888 -8.49397 -8.14814 -7.98192 -6.43671 -3.84446 1.57324 2.36730 2.63803 2.73731 2.92510 3.16660 3.25544 3.31636 3.88407 4.06444 4.16852 4.30584 4.34929 4.48685 4.51923 4.54144 4.78369 4.82553 4.95449 5.05147 5.10914 5.12310 5.15475 5.23228 5.28364 5.38984 5.53044 5.55007 5.58141 5.71623 5.75852 5.85399 5.89886 5.91175 5.93563 6.13449 6.24873 6.30815 6.33812 6.40791 6.91389 7.11681 7.23968 7.53561 7.56619 7.63457 7.95719 8.04278 8.59042 9.16040 9.52074 10.03393 10.74043 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.033628 B = 0.001504 C = 0.001488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.432948 B =18608.307990 C =18813.971653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.076 3.924 3 H 0.046 0.954 4 N -0.656 5.656 5 C 0.051 3.949 6 C 0.441 3.559 7 O -0.582 6.582 8 N -0.563 5.563 9 C -0.300 4.300 10 H 0.103 0.897 11 C 0.023 3.977 12 N -0.902 5.902 13 Si 0.930 3.070 14 H -0.278 1.278 15 H -0.284 1.284 16 H -0.269 1.269 17 C 0.141 3.859 18 H 0.086 0.914 19 C -0.157 4.157 20 N -0.723 5.723 21 C 0.512 3.488 22 O -0.539 6.539 23 C -0.136 4.136 24 C -0.028 4.028 25 C -0.022 4.022 26 C -0.023 4.023 27 N -0.495 5.495 28 C 0.181 3.819 29 N -0.567 5.567 30 H 0.420 0.580 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.048 0.952 34 H 0.351 0.649 35 H 0.043 0.957 36 H 0.086 0.914 37 H 0.392 0.608 38 H 0.271 0.729 39 H 0.053 0.947 40 H 0.081 0.919 41 H 0.060 0.940 42 H 0.400 0.600 43 H 0.091 0.909 44 H 0.100 0.900 45 H 0.097 0.903 46 H 0.078 0.922 47 H 0.170 0.830 48 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.351 5.878 -27.192 28.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.034 4.034 3 H 0.064 0.936 4 N -0.290 5.290 5 C -0.082 4.082 6 C 0.226 3.774 7 O -0.466 6.466 8 N -0.200 5.200 9 C -0.429 4.429 10 H 0.121 0.879 11 C -0.179 4.179 12 N -0.543 5.543 13 Si 0.757 3.243 14 H -0.204 1.204 15 H -0.209 1.209 16 H -0.194 1.194 17 C 0.036 3.964 18 H 0.104 0.896 19 C -0.215 4.215 20 N -0.377 5.377 21 C 0.298 3.702 22 O -0.416 6.416 23 C -0.176 4.176 24 C -0.067 4.067 25 C -0.137 4.137 26 C -0.171 4.171 27 N -0.214 5.214 28 C -0.102 4.102 29 N -0.171 5.171 30 H 0.257 0.743 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.067 0.933 34 H 0.172 0.828 35 H 0.061 0.939 36 H 0.105 0.895 37 H 0.225 0.775 38 H 0.081 0.919 39 H 0.072 0.928 40 H 0.100 0.900 41 H 0.079 0.921 42 H 0.236 0.764 43 H 0.109 0.891 44 H 0.118 0.882 45 H 0.116 0.884 46 H 0.097 0.903 47 H 0.187 0.813 48 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -5.599 4.374 -27.609 28.509 hybrid contribution 1.309 1.656 1.515 2.599 sum -4.290 6.030 -26.094 27.123 Atomic orbital electron populations 1.21884 0.94458 1.02967 1.00881 1.21720 0.96541 0.95845 0.89334 0.93591 1.60191 1.34958 1.31698 1.02186 1.21730 1.01311 0.93867 0.91266 1.19776 0.85014 0.88206 0.84413 1.90530 1.55265 1.16112 1.84714 1.41857 1.57749 1.12402 1.07993 1.19713 1.39947 0.96474 0.86796 0.87890 1.25260 0.97622 0.95783 0.99239 1.69611 1.48619 1.08881 1.27219 0.85853 0.78768 0.79535 0.80117 1.20428 1.20924 1.19380 1.21085 0.98638 0.93505 0.83167 0.89583 1.22120 1.02070 0.94585 1.02752 1.46208 1.26013 1.57102 1.08333 1.20613 0.84894 0.80072 0.84593 1.90734 1.22549 1.42738 1.85578 1.21672 1.01101 1.02338 0.92508 1.19749 0.97674 1.01826 0.87480 1.21313 1.04045 0.87515 1.00864 1.22163 1.00345 1.00654 0.93905 1.70301 1.24082 1.01543 1.25435 1.25000 0.93890 1.00517 0.90818 1.43346 1.35092 1.15214 1.23447 0.74273 0.91115 0.92051 0.93271 0.82811 0.93869 0.89544 0.77495 0.91883 0.92833 0.90009 0.92142 0.76426 0.89110 0.88210 0.88447 0.90298 0.81312 0.77610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 8.93 37.16 0.33 -1.05 16 2 C 0.08 0.85 2.66 -67.71 -0.18 0.67 16 3 H 0.05 0.50 7.80 -51.92 -0.40 0.09 16 4 N -0.66 -9.85 5.14 -107.99 -0.55 -10.41 16 5 C 0.05 0.86 5.97 -4.98 -0.03 0.83 16 6 C 0.44 10.19 7.82 -10.99 -0.09 10.10 16 7 O -0.58 -15.55 15.78 5.54 0.09 -15.46 16 8 N -0.56 -14.09 5.29 -10.96 -0.06 -14.15 16 9 C -0.30 -8.30 9.68 -14.93 -0.14 -8.45 16 10 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 11 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 12 N -0.90 -24.32 13.05 55.50 0.72 -23.59 16 13 Si 0.93 20.93 29.55 -169.99 -5.02 15.91 16 14 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 15 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 16 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 17 C 0.14 1.49 2.30 -67.93 -0.16 1.33 16 18 H 0.09 1.07 7.58 -51.93 -0.39 0.68 16 19 C -0.16 -1.78 9.02 37.16 0.34 -1.44 16 20 N -0.72 -5.88 4.99 -53.81 -0.27 -6.14 16 21 C 0.51 4.61 7.79 -10.99 -0.09 4.52 16 22 O -0.54 -7.05 15.64 5.56 0.09 -6.97 16 23 C -0.14 -0.75 5.68 -27.89 -0.16 -0.91 16 24 C -0.03 -0.17 5.06 -27.88 -0.14 -0.32 16 25 C -0.02 -0.14 6.49 -81.60 -0.53 -0.67 16 26 C -0.02 -0.19 11.79 -17.81 -0.21 -0.40 16 27 N -0.49 -4.68 11.25 -14.66 -0.16 -4.84 16 28 C 0.18 1.10 13.04 -90.37 -1.18 -0.08 16 29 N -0.57 -2.79 6.15 -10.30 -0.06 -2.85 16 30 H 0.42 0.84 8.96 -40.82 -0.37 0.48 16 31 H 0.07 0.74 6.57 -51.93 -0.34 0.40 16 32 H 0.06 0.64 7.45 -51.93 -0.39 0.25 16 33 H 0.05 0.33 6.29 -51.93 -0.33 0.00 16 34 H 0.35 5.60 7.61 -39.29 -0.30 5.30 16 35 H 0.04 0.66 8.05 -51.93 -0.42 0.24 16 36 H 0.09 1.34 7.44 -51.93 -0.39 0.95 16 37 H 0.39 9.35 7.90 -40.82 -0.32 9.02 16 38 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 39 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.08 1.06 7.17 -51.93 -0.37 0.69 16 41 H 0.06 0.63 6.57 -51.93 -0.34 0.29 16 42 H 0.40 2.29 6.58 -40.82 -0.27 2.02 16 43 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 44 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.10 0.68 8.10 -51.93 -0.42 0.26 16 46 H 0.08 0.52 8.10 -51.93 -0.42 0.10 16 47 H 0.17 1.14 8.06 -52.49 -0.42 0.72 16 48 H 0.21 0.47 8.06 -52.49 -0.42 0.04 16 LS Contribution 398.07 15.07 6.00 6.00 Total: -1.00 -35.58 398.07 -8.66 -44.23 By element: Atomic # 1 Polarization: 20.72 SS G_CDS: -7.09 Total: 13.63 kcal Atomic # 6 Polarization: 6.97 SS G_CDS: -2.33 Total: 4.64 kcal Atomic # 7 Polarization: -61.60 SS G_CDS: -0.39 Total: -61.98 kcal Atomic # 8 Polarization: -22.61 SS G_CDS: 0.17 Total: -22.43 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.58 -8.66 -44.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282139032.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.804 kcal (2) G-P(sol) polarization free energy of solvation -35.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds