Wall clock time and date at job start Tue Mar 31 2020 19:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 N 1.46898 * 109.47006 * 120.00340 * 2 1 3 5 5 C 1.46906 * 110.99961 * 275.00030 * 4 2 1 6 6 C 1.50699 * 109.46941 * 180.02562 * 5 4 2 7 7 O 1.21290 * 120.00122 * 359.97438 * 6 5 4 8 8 N 1.34781 * 119.99486 * 180.02562 * 6 5 4 9 9 C 1.37100 * 119.99314 * 180.02562 * 8 6 5 10 10 H 1.07995 * 120.00247 * 359.97438 * 9 8 6 11 11 C 1.38953 * 119.99599 * 180.02562 * 9 8 6 12 12 N 1.31413 * 120.00095 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 119.99990 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47057 * 89.99501 * 13 11 9 15 15 H 1.48500 * 109.47021 * 209.99844 * 13 11 9 16 16 H 1.48500 * 109.47145 * 329.99667 * 13 11 9 17 17 C 1.52997 * 109.47164 * 240.00295 * 2 1 3 18 18 H 1.09001 * 109.47375 * 300.00034 * 17 2 1 19 19 C 1.52996 * 109.46975 * 179.97438 * 17 2 1 20 20 N 1.46507 * 109.47235 * 59.99744 * 17 2 1 21 21 C 1.34773 * 120.00082 * 204.99815 * 20 17 2 22 22 O 1.21279 * 119.99976 * 0.02562 * 21 20 17 23 23 C 1.50703 * 119.99847 * 180.02562 * 21 20 17 24 24 C 1.52995 * 109.47163 * 179.97438 * 23 21 20 25 25 C 1.50698 * 109.47487 * 179.97438 * 24 23 21 26 26 C 1.34669 * 126.58841 * 274.69241 * 25 24 23 27 27 N 1.34131 * 108.01808 * 179.86757 * 26 25 24 28 28 C 1.30501 * 109.25498 * 0.40223 * 27 26 25 29 29 N 1.35041 * 108.70084 * 359.75122 * 28 27 26 30 30 H 0.97002 * 126.40147 * 180.02562 * 29 28 27 31 31 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 33 33 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 34 34 H 1.00895 * 110.99835 * 151.05029 * 4 2 1 35 35 H 1.08996 * 109.46904 * 300.00505 * 5 4 2 36 36 H 1.08996 * 109.46971 * 60.00210 * 5 4 2 37 37 H 0.96999 * 120.00031 * 359.97438 * 8 6 5 38 38 H 0.96997 * 119.99888 * 180.02562 * 12 11 9 39 39 H 1.09004 * 109.47108 * 180.02562 * 19 17 2 40 40 H 1.09001 * 109.47367 * 299.99815 * 19 17 2 41 41 H 1.09004 * 109.47368 * 60.00217 * 19 17 2 42 42 H 0.97000 * 119.99510 * 25.00567 * 20 17 2 43 43 H 1.09003 * 109.46851 * 300.00227 * 23 21 20 44 44 H 1.09002 * 109.47083 * 59.99915 * 23 21 20 45 45 H 1.09001 * 109.47206 * 300.00343 * 24 23 21 46 46 H 1.09002 * 109.47015 * 60.00088 * 24 23 21 47 47 H 1.07994 * 125.99347 * 0.02562 * 26 25 24 48 48 H 1.08006 * 125.65025 * 179.72940 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 2.0825 0.2225 2.3469 6 6 2.5885 -0.5217 3.5557 7 8 2.8688 -1.6986 3.4698 8 7 2.7286 0.1204 4.7324 9 6 3.1895 -0.5566 5.8319 10 1 3.4398 -1.6043 5.7553 11 6 3.3334 0.1052 7.0452 12 7 3.0283 1.3800 7.1386 13 14 3.9607 -0.8172 8.5436 14 1 5.4415 -0.7221 8.5994 15 1 3.3795 -0.2189 9.7723 16 1 3.5595 -2.2439 8.4504 17 6 2.0401 -0.7212 -1.2492 18 1 1.6767 -1.7488 -1.2493 19 6 3.5700 -0.7206 -1.2495 20 7 1.5517 -0.0305 -2.4455 21 6 1.4230 -0.7028 -3.6064 22 8 1.7111 -1.8796 -3.6608 23 6 0.9212 0.0078 -4.8370 24 6 0.8703 -0.9751 -6.0084 25 6 0.3679 -0.2647 -7.2388 26 6 -0.9192 -0.0720 -7.5852 27 7 -0.9404 0.6033 -8.7439 28 6 0.2847 0.8288 -9.1330 29 7 1.1320 0.3036 -8.2221 30 1 2.1011 0.3252 -8.2577 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5139 -0.8900 34 1 2.9173 -1.1205 1.0287 35 1 2.7588 1.0461 2.1183 36 1 1.0871 0.6161 2.5526 37 1 2.5041 1.0615 4.8011 38 1 3.1291 1.8421 7.9855 39 1 3.9334 -1.2340 -2.1398 40 1 3.9330 0.3072 -1.2497 41 1 3.9338 -1.2342 -0.3596 42 1 1.3210 0.9107 -2.4018 43 1 -0.0780 0.4003 -4.6478 44 1 1.5941 0.8297 -5.0818 45 1 1.8696 -1.3672 -6.1974 46 1 0.1976 -1.7972 -5.7639 47 1 -1.7829 -0.4010 -7.0265 48 1 0.5731 1.3490 -10.0345 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282139039.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:28 Heat of formation + Delta-G solvation = -25.011400 kcal Electronic energy + Delta-G solvation = -27905.236451 eV Core-core repulsion = 23802.679414 eV Total energy + Delta-G solvation = -4102.557037 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.45868 -40.24139 -38.51785 -37.36643 -34.55567 -34.32525 -33.81501 -32.74918 -31.33416 -30.92223 -29.91373 -29.01007 -26.43958 -25.16569 -24.26648 -23.08626 -21.96550 -21.19821 -20.68828 -20.35074 -19.32050 -18.40291 -17.95357 -17.36288 -16.58021 -16.09720 -16.00062 -15.47347 -15.37467 -14.84381 -14.65304 -14.45451 -14.13784 -14.09734 -13.85525 -13.82381 -13.57548 -13.38346 -13.32012 -12.89661 -12.60771 -12.47747 -12.39603 -11.94682 -11.73627 -11.70796 -11.58849 -11.46271 -11.35820 -11.05789 -10.66238 -10.45904 -10.40340 -10.38853 -10.23396 -10.13308 -9.52537 -9.33310 -8.79926 -8.48177 -8.13152 -7.97859 -6.43376 -3.84163 1.57118 2.36585 2.63087 2.73656 2.90769 3.16847 3.25751 3.31985 3.88600 4.07327 4.16712 4.31616 4.34425 4.48472 4.51453 4.53505 4.78731 4.80802 4.95702 5.04930 5.07671 5.12551 5.15647 5.23347 5.28461 5.31946 5.45217 5.57926 5.60198 5.64390 5.75181 5.83740 5.85375 5.92770 5.93950 6.08083 6.19345 6.25400 6.31207 6.32689 6.91071 7.14865 7.22200 7.53883 7.60345 7.63453 7.95422 8.04651 8.59425 9.16332 9.52336 10.03731 10.74314 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.041998 B = 0.001486 C = 0.001468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.540011 B =18843.879566 C =19064.560903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.078 3.922 3 H 0.046 0.954 4 N -0.661 5.661 5 C 0.052 3.948 6 C 0.440 3.560 7 O -0.582 6.582 8 N -0.563 5.563 9 C -0.300 4.300 10 H 0.103 0.897 11 C 0.023 3.977 12 N -0.902 5.902 13 Si 0.930 3.070 14 H -0.278 1.278 15 H -0.284 1.284 16 H -0.269 1.269 17 C 0.140 3.860 18 H 0.100 0.900 19 C -0.170 4.170 20 N -0.721 5.721 21 C 0.514 3.486 22 O -0.537 6.537 23 C -0.135 4.135 24 C -0.028 4.028 25 C -0.022 4.022 26 C -0.022 4.022 27 N -0.495 5.495 28 C 0.181 3.819 29 N -0.568 5.568 30 H 0.419 0.581 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.052 0.948 34 H 0.351 0.649 35 H 0.043 0.957 36 H 0.087 0.913 37 H 0.392 0.608 38 H 0.271 0.729 39 H 0.063 0.937 40 H 0.055 0.945 41 H 0.074 0.926 42 H 0.399 0.601 43 H 0.100 0.900 44 H 0.090 0.910 45 H 0.078 0.922 46 H 0.097 0.903 47 H 0.170 0.830 48 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.297 4.849 -28.626 29.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.033 4.033 3 H 0.064 0.936 4 N -0.297 5.297 5 C -0.081 4.081 6 C 0.225 3.775 7 O -0.466 6.466 8 N -0.200 5.200 9 C -0.429 4.429 10 H 0.121 0.879 11 C -0.179 4.179 12 N -0.543 5.543 13 Si 0.757 3.243 14 H -0.204 1.204 15 H -0.209 1.209 16 H -0.194 1.194 17 C 0.035 3.965 18 H 0.118 0.882 19 C -0.228 4.228 20 N -0.373 5.373 21 C 0.300 3.700 22 O -0.414 6.414 23 C -0.176 4.176 24 C -0.067 4.067 25 C -0.137 4.137 26 C -0.170 4.170 27 N -0.213 5.213 28 C -0.103 4.103 29 N -0.171 5.171 30 H 0.257 0.743 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.174 0.826 35 H 0.061 0.939 36 H 0.105 0.895 37 H 0.225 0.775 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.074 0.926 41 H 0.092 0.908 42 H 0.233 0.767 43 H 0.118 0.882 44 H 0.109 0.891 45 H 0.097 0.903 46 H 0.116 0.884 47 H 0.187 0.813 48 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -4.262 3.306 -28.784 29.285 hybrid contribution 2.048 1.211 1.069 2.609 sum -2.214 4.518 -27.714 28.167 Atomic orbital electron populations 1.21805 0.94122 1.02812 1.01006 1.21738 0.96565 0.95791 0.89224 0.93646 1.60174 1.35341 1.31874 1.02281 1.21721 1.01338 0.93817 0.91216 1.19788 0.85019 0.88213 0.84437 1.90531 1.55274 1.16096 1.84729 1.41857 1.57728 1.12436 1.07963 1.19715 1.39911 0.96504 0.86809 0.87891 1.25259 0.97622 0.95785 0.99223 1.69610 1.48608 1.08901 1.27202 0.85856 0.78748 0.79554 0.80133 1.20435 1.20915 1.19376 1.21087 0.93869 0.98314 0.83204 0.88202 1.22255 0.95276 1.02130 1.03159 1.46033 1.67546 1.14000 1.09738 1.20587 0.77548 0.87389 0.84510 1.90739 1.49741 1.15936 1.84984 1.21672 1.03782 0.99436 0.92705 1.19750 1.03076 0.96394 0.87515 1.21313 0.92209 1.05633 0.94592 1.22172 0.95450 1.03718 0.95690 1.70304 1.21263 1.16943 1.12834 1.24999 0.85147 1.02872 0.97238 1.43340 1.10371 1.44234 1.19166 0.74304 0.91706 0.92289 0.92936 0.82594 0.93868 0.89522 0.77481 0.91880 0.91770 0.92577 0.90777 0.76667 0.88189 0.89137 0.90312 0.88417 0.81289 0.77621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 9.26 37.16 0.34 -1.14 16 2 C 0.08 0.87 2.28 -67.71 -0.15 0.72 16 3 H 0.05 0.46 7.80 -51.93 -0.40 0.06 16 4 N -0.66 -10.23 5.93 -107.99 -0.64 -10.87 16 5 C 0.05 0.88 5.97 -4.97 -0.03 0.85 16 6 C 0.44 10.25 7.82 -10.98 -0.09 10.16 16 7 O -0.58 -15.71 15.78 5.55 0.09 -15.62 16 8 N -0.56 -14.11 5.29 -10.96 -0.06 -14.17 16 9 C -0.30 -8.32 9.68 -14.93 -0.14 -8.46 16 10 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 11 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 12 N -0.90 -24.31 13.05 55.50 0.72 -23.58 16 13 Si 0.93 20.94 29.55 -169.99 -5.02 15.92 16 14 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 15 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 16 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 17 C 0.14 1.48 2.29 -67.93 -0.16 1.32 16 18 H 0.10 1.32 7.58 -51.93 -0.39 0.92 16 19 C -0.17 -1.79 9.25 37.16 0.34 -1.45 16 20 N -0.72 -5.65 4.38 -53.80 -0.24 -5.88 16 21 C 0.51 4.49 7.79 -10.99 -0.09 4.41 16 22 O -0.54 -6.95 15.64 5.56 0.09 -6.86 16 23 C -0.14 -0.72 5.68 -27.88 -0.16 -0.88 16 24 C -0.03 -0.17 5.06 -27.89 -0.14 -0.31 16 25 C -0.02 -0.14 6.49 -81.60 -0.53 -0.67 16 26 C -0.02 -0.18 11.79 -17.81 -0.21 -0.39 16 27 N -0.49 -4.66 11.25 -14.66 -0.16 -4.83 16 28 C 0.18 1.08 13.04 -90.38 -1.18 -0.10 16 29 N -0.57 -2.71 6.15 -10.30 -0.06 -2.77 16 30 H 0.42 0.76 8.96 -40.82 -0.37 0.39 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.66 7.45 -51.93 -0.39 0.28 16 33 H 0.05 0.43 7.45 -51.93 -0.39 0.04 16 34 H 0.35 5.66 5.87 -39.29 -0.23 5.43 16 35 H 0.04 0.65 8.05 -51.93 -0.42 0.24 16 36 H 0.09 1.37 7.44 -51.93 -0.39 0.98 16 37 H 0.39 9.35 7.90 -40.82 -0.32 9.03 16 38 H 0.27 6.92 8.31 -40.82 -0.34 6.59 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.86 6.21 -51.93 -0.32 0.54 16 42 H 0.40 2.10 8.39 -40.82 -0.34 1.76 16 43 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.08 0.50 8.10 -51.93 -0.42 0.08 16 46 H 0.10 0.67 8.10 -51.93 -0.42 0.25 16 47 H 0.17 1.15 8.06 -52.49 -0.42 0.73 16 48 H 0.21 0.45 8.06 -52.48 -0.42 0.02 16 LS Contribution 401.84 15.07 6.06 6.06 Total: -1.00 -35.93 401.84 -8.79 -44.72 By element: Atomic # 1 Polarization: 20.61 SS G_CDS: -7.27 Total: 13.34 kcal Atomic # 6 Polarization: 6.84 SS G_CDS: -2.28 Total: 4.56 kcal Atomic # 7 Polarization: -61.66 SS G_CDS: -0.44 Total: -62.10 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: 0.17 Total: -22.48 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -35.93 -8.79 -44.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282139039.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.705 kcal (2) G-P(sol) polarization free energy of solvation -35.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds