Wall clock time and date at job start Tue Mar 31 2020 19:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 N 1.46898 * 109.47006 * 120.00340 * 2 1 3 5 5 C 1.46906 * 110.99961 * 275.00030 * 4 2 1 6 6 C 1.50699 * 109.46941 * 180.02562 * 5 4 2 7 7 O 1.21290 * 120.00122 * 359.97438 * 6 5 4 8 8 N 1.34781 * 119.99486 * 180.02562 * 6 5 4 9 9 C 1.37100 * 119.99314 * 180.02562 * 8 6 5 10 10 H 1.07995 * 120.00247 * 359.97438 * 9 8 6 11 11 C 1.38953 * 119.99599 * 180.02562 * 9 8 6 12 12 N 1.31413 * 120.00095 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 119.99990 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47057 * 89.99501 * 13 11 9 15 15 H 1.48500 * 109.47021 * 209.99844 * 13 11 9 16 16 H 1.48500 * 109.47145 * 329.99667 * 13 11 9 17 17 C 1.52997 * 109.47164 * 240.00295 * 2 1 3 18 18 H 1.09001 * 109.47375 * 300.00034 * 17 2 1 19 19 C 1.52996 * 109.46975 * 179.97438 * 17 2 1 20 20 N 1.46507 * 109.47235 * 59.99744 * 17 2 1 21 21 C 1.34773 * 120.00082 * 204.99815 * 20 17 2 22 22 O 1.21279 * 119.99976 * 0.02562 * 21 20 17 23 23 C 1.50703 * 119.99847 * 180.02562 * 21 20 17 24 24 C 1.52995 * 109.47163 * 179.97438 * 23 21 20 25 25 C 1.50698 * 109.47487 * 179.97438 * 24 23 21 26 26 C 1.34669 * 126.58841 * 274.69241 * 25 24 23 27 27 N 1.34131 * 108.01808 * 179.86757 * 26 25 24 28 28 C 1.30501 * 109.25498 * 0.40223 * 27 26 25 29 29 N 1.35041 * 108.70084 * 359.75122 * 28 27 26 30 30 H 0.97002 * 126.40147 * 180.02562 * 29 28 27 31 31 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 33 33 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 34 34 H 1.00895 * 110.99835 * 151.05029 * 4 2 1 35 35 H 1.08996 * 109.46904 * 300.00505 * 5 4 2 36 36 H 1.08996 * 109.46971 * 60.00210 * 5 4 2 37 37 H 0.96999 * 120.00031 * 359.97438 * 8 6 5 38 38 H 0.96997 * 119.99888 * 180.02562 * 12 11 9 39 39 H 1.09004 * 109.47108 * 180.02562 * 19 17 2 40 40 H 1.09001 * 109.47367 * 299.99815 * 19 17 2 41 41 H 1.09004 * 109.47368 * 60.00217 * 19 17 2 42 42 H 0.97000 * 119.99510 * 25.00567 * 20 17 2 43 43 H 1.09003 * 109.46851 * 300.00227 * 23 21 20 44 44 H 1.09002 * 109.47083 * 59.99915 * 23 21 20 45 45 H 1.09001 * 109.47206 * 300.00343 * 24 23 21 46 46 H 1.09002 * 109.47015 * 60.00088 * 24 23 21 47 47 H 1.07994 * 125.99347 * 0.02562 * 26 25 24 48 48 H 1.08006 * 125.65025 * 179.72940 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 2.0825 0.2225 2.3469 6 6 2.5885 -0.5217 3.5557 7 8 2.8688 -1.6986 3.4698 8 7 2.7286 0.1204 4.7324 9 6 3.1895 -0.5566 5.8319 10 1 3.4398 -1.6043 5.7553 11 6 3.3334 0.1052 7.0452 12 7 3.0283 1.3800 7.1386 13 14 3.9607 -0.8172 8.5436 14 1 5.4415 -0.7221 8.5994 15 1 3.3795 -0.2189 9.7723 16 1 3.5595 -2.2439 8.4504 17 6 2.0401 -0.7212 -1.2492 18 1 1.6767 -1.7488 -1.2493 19 6 3.5700 -0.7206 -1.2495 20 7 1.5517 -0.0305 -2.4455 21 6 1.4230 -0.7028 -3.6064 22 8 1.7111 -1.8796 -3.6608 23 6 0.9212 0.0078 -4.8370 24 6 0.8703 -0.9751 -6.0084 25 6 0.3679 -0.2647 -7.2388 26 6 -0.9192 -0.0720 -7.5852 27 7 -0.9404 0.6033 -8.7439 28 6 0.2847 0.8288 -9.1330 29 7 1.1320 0.3036 -8.2221 30 1 2.1011 0.3252 -8.2577 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5139 -0.8900 34 1 2.9173 -1.1205 1.0287 35 1 2.7588 1.0461 2.1183 36 1 1.0871 0.6161 2.5526 37 1 2.5041 1.0615 4.8011 38 1 3.1291 1.8421 7.9855 39 1 3.9334 -1.2340 -2.1398 40 1 3.9330 0.3072 -1.2497 41 1 3.9338 -1.2342 -0.3596 42 1 1.3210 0.9107 -2.4018 43 1 -0.0780 0.4003 -4.6478 44 1 1.5941 0.8297 -5.0818 45 1 1.8696 -1.3672 -6.1974 46 1 0.1976 -1.7972 -5.7639 47 1 -1.7829 -0.4010 -7.0265 48 1 0.5731 1.3490 -10.0345 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282139039.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:27 Heat of formation + Delta-G solvation = -52.639573 kcal Electronic energy + Delta-G solvation = -27906.434498 eV Core-core repulsion = 23802.679414 eV Total energy + Delta-G solvation = -4103.755085 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.92855 -41.02957 -40.17240 -38.52827 -36.04890 -35.30880 -34.90351 -33.28708 -33.22161 -31.95447 -30.84187 -29.56827 -28.01880 -25.91595 -25.76980 -24.00449 -22.43728 -21.72752 -21.51995 -21.12688 -21.08372 -19.92455 -18.88269 -18.27645 -17.53796 -17.41261 -16.85740 -16.61472 -16.41411 -16.01492 -15.78228 -15.45500 -15.39543 -15.19794 -14.88112 -14.67467 -14.39152 -14.24600 -14.20579 -13.93223 -13.66878 -13.50523 -13.45692 -13.16070 -13.05386 -12.89436 -12.65269 -12.58386 -12.41628 -12.31051 -12.14148 -12.12255 -11.60301 -11.50452 -10.99810 -10.91466 -10.86474 -10.34082 -10.10771 -10.01145 -9.35068 -9.29449 -8.46661 -5.95163 1.11097 1.38007 1.42200 1.54668 1.68406 2.04911 2.06987 2.24139 2.29671 2.36958 2.99369 3.20836 3.50789 3.58094 3.69658 3.93856 3.96519 4.04457 4.09531 4.18873 4.30644 4.31818 4.44580 4.46661 4.53796 4.58886 4.60367 4.64977 4.69800 4.73698 4.83971 4.87726 4.98063 5.02851 5.11702 5.19947 5.37326 5.40469 5.41756 5.48009 5.81094 5.90467 6.11323 6.38375 6.58738 6.59816 6.60770 7.13075 7.16534 7.31010 7.56592 8.12286 8.70583 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.041998 B = 0.001486 C = 0.001468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.540011 B =18843.879566 C =19064.560903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.083 3.917 3 H 0.071 0.929 4 N -0.680 5.680 5 C 0.068 3.932 6 C 0.436 3.564 7 O -0.625 6.625 8 N -0.572 5.572 9 C -0.335 4.335 10 H 0.077 0.923 11 C -0.011 4.011 12 N -0.919 5.919 13 Si 0.991 3.009 14 H -0.270 1.270 15 H -0.270 1.270 16 H -0.275 1.275 17 C 0.149 3.851 18 H 0.068 0.932 19 C -0.164 4.164 20 N -0.708 5.708 21 C 0.513 3.487 22 O -0.584 6.584 23 C -0.123 4.123 24 C -0.022 4.022 25 C -0.017 4.017 26 C -0.048 4.048 27 N -0.542 5.542 28 C 0.188 3.812 29 N -0.557 5.557 30 H 0.434 0.566 31 H 0.043 0.957 32 H 0.055 0.945 33 H 0.082 0.918 34 H 0.345 0.655 35 H 0.071 0.929 36 H 0.105 0.895 37 H 0.397 0.603 38 H 0.278 0.722 39 H 0.055 0.945 40 H 0.073 0.927 41 H 0.058 0.942 42 H 0.416 0.584 43 H 0.117 0.883 44 H 0.115 0.885 45 H 0.075 0.925 46 H 0.084 0.916 47 H 0.171 0.829 48 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.037 7.096 -29.636 30.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.027 4.027 3 H 0.089 0.911 4 N -0.316 5.316 5 C -0.065 4.065 6 C 0.224 3.776 7 O -0.511 6.511 8 N -0.209 5.209 9 C -0.465 4.465 10 H 0.096 0.904 11 C -0.210 4.210 12 N -0.559 5.559 13 Si 0.815 3.185 14 H -0.196 1.196 15 H -0.195 1.195 16 H -0.200 1.200 17 C 0.043 3.957 18 H 0.087 0.913 19 C -0.223 4.223 20 N -0.361 5.361 21 C 0.301 3.699 22 O -0.464 6.464 23 C -0.163 4.163 24 C -0.061 4.061 25 C -0.133 4.133 26 C -0.196 4.196 27 N -0.261 5.261 28 C -0.097 4.097 29 N -0.162 5.162 30 H 0.275 0.725 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.100 0.900 34 H 0.167 0.833 35 H 0.089 0.911 36 H 0.123 0.877 37 H 0.231 0.769 38 H 0.087 0.913 39 H 0.074 0.926 40 H 0.092 0.908 41 H 0.077 0.923 42 H 0.254 0.746 43 H 0.135 0.865 44 H 0.133 0.867 45 H 0.094 0.906 46 H 0.103 0.897 47 H 0.188 0.812 48 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -4.006 5.619 -29.805 30.593 hybrid contribution 1.961 0.497 1.298 2.404 sum -2.045 6.116 -28.507 29.228 Atomic orbital electron populations 1.21810 0.93525 1.01864 1.02335 1.21782 0.96824 0.96553 0.87547 0.91095 1.60162 1.35259 1.32645 1.03571 1.21571 1.02435 0.93623 0.88835 1.20921 0.83226 0.87989 0.85507 1.90500 1.56689 1.18319 1.85624 1.41913 1.58227 1.12603 1.08167 1.19664 1.42181 0.95987 0.88672 0.90449 1.25999 0.97189 0.96613 1.01245 1.69663 1.48482 1.09649 1.28154 0.84952 0.78507 0.77997 0.77032 1.19591 1.19505 1.19968 1.20773 0.93805 0.96996 0.84122 0.91345 1.22186 0.95217 1.02871 1.02000 1.45857 1.66925 1.14680 1.08618 1.21189 0.76524 0.86863 0.85359 1.90731 1.51793 1.18161 1.85690 1.21632 1.05053 0.99232 0.90341 1.19644 1.02473 0.96246 0.87768 1.21226 0.91867 1.05375 0.94853 1.22365 0.96432 1.04667 0.96090 1.70271 1.23368 1.18664 1.13836 1.25658 0.84440 1.01760 0.97803 1.43315 1.11158 1.43378 1.18354 0.72492 0.93823 0.92589 0.89951 0.83272 0.91091 0.87709 0.76896 0.91290 0.92592 0.90778 0.92289 0.74619 0.86482 0.86732 0.90623 0.89728 0.81162 0.74289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.65 9.26 71.98 0.67 -1.99 16 2 C 0.08 1.70 2.28 44.92 0.10 1.80 16 3 H 0.07 1.16 7.80 -2.39 -0.02 1.14 16 4 N -0.68 -20.55 5.93 -495.57 -2.94 -23.49 16 5 C 0.07 2.20 5.97 85.56 0.51 2.71 16 6 C 0.44 20.48 7.82 87.66 0.69 21.16 16 7 O -0.62 -34.70 15.78 -3.06 -0.05 -34.75 16 8 N -0.57 -28.96 5.29 -306.98 -1.62 -30.59 16 9 C -0.34 -19.00 9.68 84.04 0.81 -18.19 16 10 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 11 C -0.01 -0.56 5.50 84.93 0.47 -0.09 16 12 N -0.92 -48.94 13.05 21.66 0.28 -48.65 16 13 Si 0.99 42.75 29.55 68.60 2.03 44.77 16 14 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 15 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 16 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 17 C 0.15 2.99 2.29 44.99 0.10 3.10 16 18 H 0.07 1.85 7.58 -2.39 -0.02 1.83 16 19 C -0.16 -3.34 9.25 71.98 0.67 -2.67 16 20 N -0.71 -9.51 4.38 -442.53 -1.94 -11.45 16 21 C 0.51 8.23 7.79 87.66 0.68 8.91 16 22 O -0.58 -15.14 15.64 -3.03 -0.05 -15.19 16 23 C -0.12 -1.01 5.68 29.85 0.17 -0.84 16 24 C -0.02 -0.24 5.06 29.85 0.15 -0.09 16 25 C -0.02 -0.19 6.49 40.95 0.27 0.07 16 26 C -0.05 -0.77 11.79 83.52 0.98 0.21 16 27 N -0.54 -9.77 11.25 -200.31 -2.25 -12.02 16 28 C 0.19 1.87 13.04 180.26 2.35 4.22 16 29 N -0.56 -4.14 6.15 -186.49 -1.15 -5.29 16 30 H 0.43 0.44 8.96 -92.71 -0.83 -0.39 16 31 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.06 1.13 7.45 -2.39 -0.02 1.11 16 33 H 0.08 1.08 7.45 -2.39 -0.02 1.06 16 34 H 0.35 11.17 5.87 -89.70 -0.53 10.64 16 35 H 0.07 1.95 8.05 -2.39 -0.02 1.93 16 36 H 0.10 3.07 7.44 -2.39 -0.02 3.05 16 37 H 0.40 18.92 7.90 -92.71 -0.73 18.19 16 38 H 0.28 13.84 8.31 -92.71 -0.77 13.07 16 39 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 40 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.06 1.38 6.21 -2.39 -0.01 1.37 16 42 H 0.42 2.83 8.39 -92.71 -0.78 2.05 16 43 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 44 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 45 H 0.08 0.89 8.10 -2.39 -0.02 0.87 16 46 H 0.08 1.17 8.10 -2.39 -0.02 1.15 16 47 H 0.17 2.37 8.06 -2.91 -0.02 2.35 16 48 H 0.24 0.35 8.06 -2.91 -0.02 0.33 16 Total: -1.00 -80.70 401.84 -0.91 -81.61 By element: Atomic # 1 Polarization: 38.56 SS G_CDS: -1.84 Total: 36.72 kcal Atomic # 6 Polarization: 9.71 SS G_CDS: 8.62 Total: 18.32 kcal Atomic # 7 Polarization: -121.87 SS G_CDS: -9.62 Total: -131.49 kcal Atomic # 8 Polarization: -49.84 SS G_CDS: -0.10 Total: -49.94 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.77 kcal Total: -80.70 -0.91 -81.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282139039.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.975 kcal (2) G-P(sol) polarization free energy of solvation -80.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds