Wall clock time and date at job start Tue Mar 31 2020 19:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09003 * 109.47183 * 2 1 4 4 N 1.46893 * 109.47472 * 239.99701 * 2 1 3 5 5 C 1.46900 * 111.00110 * 84.99999 * 4 2 1 6 6 C 1.50707 * 109.47230 * 180.02562 * 5 4 2 7 7 O 1.21290 * 119.99702 * 359.97438 * 6 5 4 8 8 N 1.34774 * 120.00071 * 179.97438 * 6 5 4 9 9 C 1.37096 * 119.99989 * 179.97438 * 8 6 5 10 10 H 1.07995 * 119.99905 * 0.02562 * 9 8 6 11 11 C 1.38949 * 119.99748 * 179.97438 * 9 8 6 12 12 N 1.31412 * 119.99998 * 179.97438 * 11 9 8 13 13 Si 1.86801 * 120.00384 * 0.02562 * 11 9 8 14 14 H 1.48499 * 109.47310 * 89.99469 * 13 11 9 15 15 H 1.48497 * 109.47036 * 209.99663 * 13 11 9 16 16 H 1.48503 * 109.46743 * 329.99319 * 13 11 9 17 17 C 1.53002 * 109.47226 * 119.99230 * 2 1 3 18 18 H 1.08997 * 109.47399 * 185.00003 * 17 2 1 19 19 C 1.53002 * 109.46770 * 65.00418 * 17 2 1 20 20 N 1.46500 * 109.47447 * 305.00564 * 17 2 1 21 21 C 1.34768 * 120.00168 * 204.99773 * 20 17 2 22 22 O 1.21282 * 120.00014 * 0.02562 * 21 20 17 23 23 C 1.50709 * 120.00284 * 179.97438 * 21 20 17 24 24 C 1.52997 * 109.47190 * 180.02562 * 23 21 20 25 25 C 1.50696 * 109.46789 * 179.97438 * 24 23 21 26 26 C 1.34669 * 126.59505 * 274.95615 * 25 24 23 27 27 N 1.34128 * 108.02336 * 180.02562 * 26 25 24 28 28 C 1.30498 * 109.25660 * 0.02562 * 27 26 25 29 29 N 1.35044 * 108.69841 * 0.02562 * 28 27 26 30 30 H 0.97000 * 126.39624 * 179.73956 * 29 28 27 31 31 H 1.09004 * 109.47191 * 60.00843 * 1 2 3 32 32 H 1.09003 * 109.46736 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47443 * 300.00111 * 1 2 3 34 34 H 1.00901 * 111.00521 * 208.95309 * 4 2 1 35 35 H 1.09004 * 109.47084 * 299.99575 * 5 4 2 36 36 H 1.08996 * 109.47197 * 60.00311 * 5 4 2 37 37 H 0.97002 * 119.99574 * 0.02562 * 8 6 5 38 38 H 0.96997 * 120.00684 * 180.02562 * 12 11 9 39 39 H 1.09002 * 109.47158 * 299.99639 * 19 17 2 40 40 H 1.08998 * 109.47166 * 59.99947 * 19 17 2 41 41 H 1.09003 * 109.47096 * 179.97438 * 19 17 2 42 42 H 0.97000 * 119.99706 * 24.99390 * 20 17 2 43 43 H 1.08992 * 109.46589 * 59.99752 * 23 21 20 44 44 H 1.08999 * 109.46544 * 300.00411 * 23 21 20 45 45 H 1.09001 * 109.47166 * 59.99925 * 24 23 21 46 46 H 1.09001 * 109.46949 * 299.99830 * 24 23 21 47 47 H 1.07998 * 125.98937 * 0.07309 * 26 25 24 48 48 H 1.08002 * 125.65412 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1993 5 6 2.0825 0.2225 -2.3468 6 6 2.5875 -0.5220 -3.5559 7 8 2.8679 -1.6989 -3.4700 8 7 2.7274 0.1200 -4.7327 9 6 3.1873 -0.5572 -5.8325 10 1 3.4370 -1.6051 -5.7560 11 6 3.3311 0.1046 -7.0458 12 7 3.7724 -0.5443 -8.0999 13 14 2.8985 1.9170 -7.1783 14 1 4.0989 2.7360 -6.8727 15 1 2.4335 2.2153 -8.5566 16 1 1.8192 2.2402 -6.2109 17 6 2.0400 -0.7211 1.2493 18 1 3.1262 -0.6442 1.2953 19 6 1.6353 -2.1953 1.1881 20 7 1.4558 -0.1035 2.4424 21 6 2.0911 -0.1935 3.6276 22 8 3.1467 -0.7854 3.7063 23 6 1.4904 0.4424 4.8548 24 6 2.4046 0.1954 6.0565 25 6 1.8043 0.8318 7.2835 26 6 1.9411 2.1141 7.6714 27 7 1.2546 2.2782 8.8119 28 6 0.6979 1.1461 9.1459 29 7 1.0166 0.2170 8.2191 30 1 0.7414 -0.7131 8.2182 31 1 -0.3634 0.5137 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8899 34 1 2.9173 -1.1205 -1.0286 35 1 1.0870 0.6161 -2.5526 36 1 2.7589 1.0461 -2.1182 37 1 2.5035 1.0613 -4.8012 38 1 3.8731 -0.0824 -8.9468 39 1 0.5489 -2.2723 1.1423 40 1 2.0699 -2.6549 0.3005 41 1 1.9990 -2.7092 2.0780 42 1 0.6117 0.3703 2.3794 43 1 0.5105 0.0057 5.0475 44 1 1.3848 1.5151 4.6934 45 1 3.3844 0.6324 5.8635 46 1 2.5106 -0.8773 6.2180 47 1 2.5043 2.8769 7.1544 48 1 0.0846 0.9796 10.0191 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282139041.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:31 Heat of formation + Delta-G solvation = -16.043521 kcal Electronic energy + Delta-G solvation = -27968.748542 eV Core-core repulsion = 23866.580381 eV Total energy + Delta-G solvation = -4102.168161 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.47959 -40.29987 -38.67495 -37.53912 -34.62229 -34.35942 -33.86872 -32.77123 -31.71660 -31.20470 -29.47785 -28.89520 -26.78995 -25.35667 -24.38784 -23.24668 -21.99128 -21.25514 -20.66822 -19.89281 -19.43633 -18.48390 -18.40459 -17.43324 -16.51115 -16.05465 -15.97722 -15.59070 -15.47656 -15.15019 -14.82590 -14.71659 -14.37228 -13.92532 -13.92138 -13.76646 -13.64913 -13.23729 -13.09649 -12.86518 -12.65168 -12.57608 -12.41560 -12.18826 -12.10489 -11.92352 -11.71691 -11.60415 -11.23561 -11.03207 -10.79791 -10.61402 -10.47469 -10.41418 -10.16371 -9.99165 -9.59097 -9.35550 -8.82151 -8.62121 -8.26277 -8.18813 -6.32585 -3.84179 1.54981 2.33066 2.60843 2.71810 2.88386 3.00798 3.05049 3.13643 3.71752 4.03387 4.08938 4.15727 4.32043 4.45758 4.47628 4.49477 4.70576 4.75393 4.88163 4.93829 5.02462 5.04898 5.12879 5.19596 5.25643 5.32827 5.45095 5.46517 5.55388 5.60282 5.68573 5.76710 5.81441 5.82995 5.86157 5.89239 6.09978 6.27506 6.29152 6.34776 6.89150 7.00072 7.18786 7.47405 7.56325 7.61385 7.91863 8.12784 8.57847 8.93326 9.40638 9.80514 10.80509 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.027939 B = 0.001588 C = 0.001550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.945403 B =17626.007137 C =18062.420624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.076 3.924 3 H 0.047 0.953 4 N -0.657 5.657 5 C 0.048 3.952 6 C 0.450 3.550 7 O -0.564 6.564 8 N -0.590 5.590 9 C -0.306 4.306 10 H 0.120 0.880 11 C 0.042 3.958 12 N -0.881 5.881 13 Si 0.880 3.120 14 H -0.271 1.271 15 H -0.276 1.276 16 H -0.269 1.269 17 C 0.141 3.859 18 H 0.087 0.913 19 C -0.157 4.157 20 N -0.723 5.723 21 C 0.512 3.488 22 O -0.539 6.539 23 C -0.136 4.136 24 C -0.028 4.028 25 C -0.022 4.022 26 C -0.023 4.023 27 N -0.495 5.495 28 C 0.181 3.819 29 N -0.567 5.567 30 H 0.419 0.581 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.049 0.951 34 H 0.353 0.647 35 H 0.088 0.912 36 H 0.045 0.955 37 H 0.370 0.630 38 H 0.273 0.727 39 H 0.059 0.941 40 H 0.082 0.918 41 H 0.052 0.948 42 H 0.400 0.600 43 H 0.091 0.909 44 H 0.099 0.901 45 H 0.097 0.903 46 H 0.079 0.921 47 H 0.170 0.830 48 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.812 5.567 30.880 32.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.034 4.034 3 H 0.065 0.935 4 N -0.291 5.291 5 C -0.085 4.085 6 C 0.235 3.765 7 O -0.445 6.445 8 N -0.230 5.230 9 C -0.434 4.434 10 H 0.137 0.863 11 C -0.161 4.161 12 N -0.521 5.521 13 Si 0.706 3.294 14 H -0.197 1.197 15 H -0.202 1.202 16 H -0.195 1.195 17 C 0.036 3.964 18 H 0.105 0.895 19 C -0.215 4.215 20 N -0.377 5.377 21 C 0.298 3.702 22 O -0.415 6.415 23 C -0.176 4.176 24 C -0.067 4.067 25 C -0.138 4.138 26 C -0.171 4.171 27 N -0.213 5.213 28 C -0.102 4.102 29 N -0.171 5.171 30 H 0.257 0.743 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.068 0.932 34 H 0.174 0.826 35 H 0.106 0.894 36 H 0.063 0.937 37 H 0.203 0.797 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.100 0.900 41 H 0.071 0.929 42 H 0.236 0.764 43 H 0.109 0.891 44 H 0.117 0.883 45 H 0.115 0.885 46 H 0.097 0.903 47 H 0.187 0.813 48 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -9.447 4.871 31.016 32.787 hybrid contribution -0.181 1.113 -0.596 1.276 sum -9.628 5.985 30.420 32.464 Atomic orbital electron populations 1.21886 0.94446 1.02987 1.00897 1.21722 0.96535 0.95902 0.89287 0.93460 1.60174 1.35104 1.31604 1.02191 1.21771 1.01379 0.94001 0.91335 1.19673 0.84586 0.88217 0.83990 1.90570 1.53776 1.15829 1.84372 1.42201 1.60081 1.11091 1.09586 1.19435 1.40125 0.98050 0.85826 0.86259 1.25036 0.97460 0.98391 0.95221 1.69618 1.45066 1.36548 1.00840 0.86673 0.78980 0.85157 0.78577 1.19663 1.20157 1.19502 1.21083 0.98732 0.93443 0.83154 0.89471 1.22122 1.02019 0.94617 1.02779 1.46199 1.26024 1.57136 1.08332 1.20620 0.84915 0.80024 0.84613 1.90738 1.22488 1.42709 1.85588 1.21673 1.00429 1.02958 0.92548 1.19748 0.98437 1.01249 0.87295 1.21309 1.01950 0.94842 0.95656 1.22167 1.04299 0.94915 0.95685 1.70302 1.12275 1.24639 1.14117 1.25003 1.03821 0.84523 0.96881 1.43342 1.39958 1.13236 1.20557 0.74283 0.92084 0.91101 0.93214 0.82624 0.89426 0.93669 0.79712 0.91599 0.92191 0.89954 0.92884 0.76437 0.89066 0.88257 0.88460 0.90265 0.81318 0.77601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 8.93 37.15 0.33 -0.95 16 2 C 0.08 0.79 2.66 -67.72 -0.18 0.61 16 3 H 0.05 0.47 7.80 -51.93 -0.40 0.07 16 4 N -0.66 -9.32 5.14 -107.99 -0.55 -9.88 16 5 C 0.05 0.75 5.97 -4.97 -0.03 0.72 16 6 C 0.45 9.95 7.82 -10.98 -0.09 9.87 16 7 O -0.56 -14.84 15.78 5.55 0.09 -14.75 16 8 N -0.59 -13.83 5.09 -10.96 -0.06 -13.89 16 9 C -0.31 -8.59 10.16 -14.93 -0.15 -8.74 16 10 H 0.12 3.84 7.39 -52.49 -0.39 3.45 16 11 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 12 N -0.88 -25.61 13.96 55.50 0.77 -24.83 16 13 Si 0.88 19.17 27.74 -169.99 -4.71 14.45 16 14 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 15 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 16 H -0.27 -5.33 6.52 56.52 0.37 -4.96 16 17 C 0.14 1.41 2.30 -67.93 -0.16 1.25 16 18 H 0.09 1.04 7.58 -51.93 -0.39 0.65 16 19 C -0.16 -1.70 9.02 37.16 0.34 -1.36 16 20 N -0.72 -5.52 4.99 -53.80 -0.27 -5.79 16 21 C 0.51 4.41 7.79 -10.99 -0.09 4.32 16 22 O -0.54 -6.86 15.64 5.56 0.09 -6.77 16 23 C -0.14 -0.70 5.68 -27.88 -0.16 -0.86 16 24 C -0.03 -0.17 5.06 -27.89 -0.14 -0.31 16 25 C -0.02 -0.14 6.49 -81.60 -0.53 -0.67 16 26 C -0.02 -0.18 11.79 -17.81 -0.21 -0.39 16 27 N -0.49 -4.59 11.25 -14.67 -0.16 -4.75 16 28 C 0.18 1.06 13.04 -90.38 -1.18 -0.12 16 29 N -0.57 -2.63 6.15 -10.30 -0.06 -2.69 16 30 H 0.42 0.70 8.96 -40.82 -0.37 0.34 16 31 H 0.06 0.58 7.45 -51.93 -0.39 0.20 16 32 H 0.07 0.69 6.56 -51.93 -0.34 0.35 16 33 H 0.05 0.30 6.29 -51.93 -0.33 -0.03 16 34 H 0.35 5.36 7.62 -39.29 -0.30 5.06 16 35 H 0.09 1.23 7.44 -51.93 -0.39 0.84 16 36 H 0.05 0.62 8.05 -51.93 -0.42 0.20 16 37 H 0.37 7.59 5.76 -40.82 -0.24 7.35 16 38 H 0.27 7.33 8.31 -40.82 -0.34 7.00 16 39 H 0.06 0.60 6.56 -51.93 -0.34 0.25 16 40 H 0.08 1.02 7.17 -51.93 -0.37 0.65 16 41 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.40 2.08 6.58 -40.82 -0.27 1.81 16 43 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.10 0.66 8.10 -51.93 -0.42 0.24 16 46 H 0.08 0.49 8.10 -51.93 -0.42 0.07 16 47 H 0.17 1.12 8.06 -52.49 -0.42 0.70 16 48 H 0.21 0.42 8.06 -52.49 -0.42 -0.01 16 LS Contribution 394.95 15.07 5.95 5.95 Total: -1.00 -36.95 394.95 -8.31 -45.26 By element: Atomic # 1 Polarization: 20.33 SS G_CDS: -7.05 Total: 13.27 kcal Atomic # 6 Polarization: 6.76 SS G_CDS: -2.34 Total: 4.42 kcal Atomic # 7 Polarization: -61.50 SS G_CDS: -0.33 Total: -61.84 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: 0.17 Total: -21.52 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -4.71 Total: 14.45 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -36.95 -8.31 -45.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282139041.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.216 kcal (2) G-P(sol) polarization free energy of solvation -36.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds