Wall clock time and date at job start Tue Mar 31 2020 19:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09003 * 109.47183 * 2 1 4 4 N 1.46893 * 109.47472 * 239.99701 * 2 1 3 5 5 C 1.46900 * 111.00110 * 84.99999 * 4 2 1 6 6 C 1.50707 * 109.47230 * 180.02562 * 5 4 2 7 7 O 1.21290 * 119.99702 * 359.97438 * 6 5 4 8 8 N 1.34774 * 120.00071 * 179.97438 * 6 5 4 9 9 C 1.37096 * 119.99989 * 179.97438 * 8 6 5 10 10 H 1.07995 * 119.99905 * 0.02562 * 9 8 6 11 11 C 1.38949 * 119.99748 * 179.97438 * 9 8 6 12 12 N 1.31412 * 119.99998 * 179.97438 * 11 9 8 13 13 Si 1.86801 * 120.00384 * 0.02562 * 11 9 8 14 14 H 1.48499 * 109.47310 * 89.99469 * 13 11 9 15 15 H 1.48497 * 109.47036 * 209.99663 * 13 11 9 16 16 H 1.48503 * 109.46743 * 329.99319 * 13 11 9 17 17 C 1.53002 * 109.47226 * 119.99230 * 2 1 3 18 18 H 1.08997 * 109.47399 * 185.00003 * 17 2 1 19 19 C 1.53002 * 109.46770 * 65.00418 * 17 2 1 20 20 N 1.46500 * 109.47447 * 305.00564 * 17 2 1 21 21 C 1.34768 * 120.00168 * 204.99773 * 20 17 2 22 22 O 1.21282 * 120.00014 * 0.02562 * 21 20 17 23 23 C 1.50709 * 120.00284 * 179.97438 * 21 20 17 24 24 C 1.52997 * 109.47190 * 180.02562 * 23 21 20 25 25 C 1.50696 * 109.46789 * 179.97438 * 24 23 21 26 26 C 1.34669 * 126.59505 * 274.95615 * 25 24 23 27 27 N 1.34128 * 108.02336 * 180.02562 * 26 25 24 28 28 C 1.30498 * 109.25660 * 0.02562 * 27 26 25 29 29 N 1.35044 * 108.69841 * 0.02562 * 28 27 26 30 30 H 0.97000 * 126.39624 * 179.73956 * 29 28 27 31 31 H 1.09004 * 109.47191 * 60.00843 * 1 2 3 32 32 H 1.09003 * 109.46736 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47443 * 300.00111 * 1 2 3 34 34 H 1.00901 * 111.00521 * 208.95309 * 4 2 1 35 35 H 1.09004 * 109.47084 * 299.99575 * 5 4 2 36 36 H 1.08996 * 109.47197 * 60.00311 * 5 4 2 37 37 H 0.97002 * 119.99574 * 0.02562 * 8 6 5 38 38 H 0.96997 * 120.00684 * 180.02562 * 12 11 9 39 39 H 1.09002 * 109.47158 * 299.99639 * 19 17 2 40 40 H 1.08998 * 109.47166 * 59.99947 * 19 17 2 41 41 H 1.09003 * 109.47096 * 179.97438 * 19 17 2 42 42 H 0.97000 * 119.99706 * 24.99390 * 20 17 2 43 43 H 1.08992 * 109.46589 * 59.99752 * 23 21 20 44 44 H 1.08999 * 109.46544 * 300.00411 * 23 21 20 45 45 H 1.09001 * 109.47166 * 59.99925 * 24 23 21 46 46 H 1.09001 * 109.46949 * 299.99830 * 24 23 21 47 47 H 1.07998 * 125.98937 * 0.07309 * 26 25 24 48 48 H 1.08002 * 125.65412 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1993 5 6 2.0825 0.2225 -2.3468 6 6 2.5875 -0.5220 -3.5559 7 8 2.8679 -1.6989 -3.4700 8 7 2.7274 0.1200 -4.7327 9 6 3.1873 -0.5572 -5.8325 10 1 3.4370 -1.6051 -5.7560 11 6 3.3311 0.1046 -7.0458 12 7 3.7724 -0.5443 -8.0999 13 14 2.8985 1.9170 -7.1783 14 1 4.0989 2.7360 -6.8727 15 1 2.4335 2.2153 -8.5566 16 1 1.8192 2.2402 -6.2109 17 6 2.0400 -0.7211 1.2493 18 1 3.1262 -0.6442 1.2953 19 6 1.6353 -2.1953 1.1881 20 7 1.4558 -0.1035 2.4424 21 6 2.0911 -0.1935 3.6276 22 8 3.1467 -0.7854 3.7063 23 6 1.4904 0.4424 4.8548 24 6 2.4046 0.1954 6.0565 25 6 1.8043 0.8318 7.2835 26 6 1.9411 2.1141 7.6714 27 7 1.2546 2.2782 8.8119 28 6 0.6979 1.1461 9.1459 29 7 1.0166 0.2170 8.2191 30 1 0.7414 -0.7131 8.2182 31 1 -0.3634 0.5137 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8899 34 1 2.9173 -1.1205 -1.0286 35 1 1.0870 0.6161 -2.5526 36 1 2.7589 1.0461 -2.1182 37 1 2.5035 1.0613 -4.8012 38 1 3.8731 -0.0824 -8.9468 39 1 0.5489 -2.2723 1.1423 40 1 2.0699 -2.6549 0.3005 41 1 1.9990 -2.7092 2.0780 42 1 0.6117 0.3703 2.3794 43 1 0.5105 0.0057 5.0475 44 1 1.3848 1.5151 4.6934 45 1 3.3844 0.6324 5.8635 46 1 2.5106 -0.8773 6.2180 47 1 2.5043 2.8769 7.1544 48 1 0.0846 0.9796 10.0191 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282139041.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:30 Heat of formation + Delta-G solvation = -45.904859 kcal Electronic energy + Delta-G solvation = -27970.043427 eV Core-core repulsion = 23866.580381 eV Total energy + Delta-G solvation = -4103.463046 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.93232 -41.06069 -40.29772 -38.60217 -36.09323 -35.33647 -34.91296 -33.74576 -33.23827 -32.15027 -30.24009 -29.48778 -28.25758 -26.12948 -25.72797 -24.27457 -22.44533 -21.78388 -21.30156 -21.29439 -20.71444 -20.30842 -18.89823 -18.25914 -17.55716 -17.32354 -16.78833 -16.73471 -16.56582 -16.11748 -15.82632 -15.53885 -15.27603 -15.13581 -14.97952 -14.68744 -14.42194 -14.32350 -14.27794 -14.04496 -13.68002 -13.52475 -13.46425 -13.17098 -13.06796 -13.02630 -12.85430 -12.50038 -12.41072 -12.16029 -11.97407 -11.90695 -11.64730 -11.50825 -10.99695 -10.92592 -10.86840 -10.43590 -10.24512 -10.09741 -9.37144 -9.29875 -8.40852 -6.01960 1.10688 1.30526 1.36109 1.45149 1.66942 1.96513 2.06760 2.23528 2.24129 2.35496 2.79285 3.15760 3.39783 3.62350 3.69682 3.92494 3.96082 4.03166 4.08951 4.14584 4.23038 4.31740 4.42913 4.48636 4.53216 4.56534 4.63490 4.66932 4.68812 4.82924 4.84193 4.85844 5.01720 5.05799 5.11113 5.30311 5.36830 5.51037 5.52102 5.54945 5.80694 5.90806 6.04503 6.32424 6.57539 6.59177 6.60351 6.88664 7.16159 7.29421 7.40312 7.97220 8.76841 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.027939 B = 0.001588 C = 0.001550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.945403 B =17626.007137 C =18062.420624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.082 3.918 3 H 0.063 0.937 4 N -0.674 5.674 5 C 0.063 3.937 6 C 0.448 3.552 7 O -0.614 6.614 8 N -0.591 5.591 9 C -0.330 4.330 10 H 0.054 0.946 11 C -0.015 4.015 12 N -0.935 5.935 13 Si 0.965 3.035 14 H -0.258 1.258 15 H -0.276 1.276 16 H -0.229 1.229 17 C 0.148 3.852 18 H 0.065 0.935 19 C -0.150 4.150 20 N -0.710 5.710 21 C 0.511 3.489 22 O -0.585 6.585 23 C -0.123 4.123 24 C -0.022 4.022 25 C -0.017 4.017 26 C -0.048 4.048 27 N -0.541 5.541 28 C 0.188 3.812 29 N -0.558 5.558 30 H 0.434 0.566 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.083 0.917 34 H 0.343 0.657 35 H 0.117 0.883 36 H 0.077 0.923 37 H 0.390 0.610 38 H 0.279 0.721 39 H 0.071 0.929 40 H 0.059 0.941 41 H 0.042 0.958 42 H 0.415 0.585 43 H 0.114 0.886 44 H 0.117 0.883 45 H 0.084 0.916 46 H 0.075 0.925 47 H 0.171 0.829 48 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.479 8.774 32.955 36.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.028 4.028 3 H 0.081 0.919 4 N -0.307 5.307 5 C -0.069 4.069 6 C 0.236 3.764 7 O -0.498 6.498 8 N -0.233 5.233 9 C -0.459 4.459 10 H 0.072 0.928 11 C -0.213 4.213 12 N -0.576 5.576 13 Si 0.785 3.215 14 H -0.183 1.183 15 H -0.201 1.201 16 H -0.152 1.152 17 C 0.042 3.958 18 H 0.083 0.917 19 C -0.208 4.208 20 N -0.364 5.364 21 C 0.299 3.701 22 O -0.465 6.465 23 C -0.163 4.163 24 C -0.061 4.061 25 C -0.134 4.134 26 C -0.196 4.196 27 N -0.261 5.261 28 C -0.097 4.097 29 N -0.162 5.162 30 H 0.275 0.725 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.102 0.898 34 H 0.162 0.838 35 H 0.134 0.866 36 H 0.094 0.906 37 H 0.226 0.774 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.078 0.922 41 H 0.061 0.939 42 H 0.255 0.745 43 H 0.133 0.867 44 H 0.136 0.864 45 H 0.103 0.897 46 H 0.093 0.907 47 H 0.189 0.811 48 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -12.168 8.088 33.120 36.200 hybrid contribution 0.678 -0.058 -1.160 1.345 sum -11.490 8.030 31.960 34.899 Atomic orbital electron populations 1.21907 0.92788 1.02817 1.02568 1.21773 0.97581 0.96038 0.87389 0.91876 1.60208 1.34737 1.32310 1.03477 1.21688 1.03102 0.93702 0.88449 1.21002 0.82255 0.87933 0.85214 1.90551 1.55273 1.18610 1.85402 1.42021 1.60574 1.11836 1.08821 1.19011 1.42335 0.96115 0.88457 0.92762 1.26123 0.96379 1.05035 0.93807 1.69806 1.46318 1.39618 1.01822 0.85361 0.80215 0.76434 0.79478 1.18254 1.20086 1.15219 1.20811 0.97635 0.93074 0.84243 0.91714 1.22027 1.02481 0.95151 1.01178 1.46025 1.26416 1.56658 1.07316 1.21224 0.84219 0.79180 0.85496 1.90730 1.24665 1.44823 1.86255 1.21637 1.00734 1.03796 0.90142 1.19642 0.98127 1.00760 0.87601 1.21229 1.01905 0.94363 0.95862 1.22368 1.05144 0.95945 0.96102 1.70269 1.13975 1.26707 1.15150 1.25659 1.02857 0.83786 0.97358 1.43321 1.39191 1.13927 1.19773 0.72498 0.92181 0.92221 0.89812 0.83771 0.86553 0.90560 0.77449 0.91169 0.91010 0.92209 0.93853 0.74546 0.86740 0.86442 0.89704 0.90670 0.81127 0.74296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 8.93 71.98 0.64 -1.35 16 2 C 0.08 1.47 2.66 44.92 0.12 1.59 16 3 H 0.06 0.99 7.80 -2.39 -0.02 0.97 16 4 N -0.67 -18.23 5.14 -495.59 -2.55 -20.77 16 5 C 0.06 1.80 5.97 85.56 0.51 2.31 16 6 C 0.45 19.79 7.82 87.66 0.69 20.48 16 7 O -0.61 -33.72 15.78 -3.06 -0.05 -33.77 16 8 N -0.59 -27.43 5.09 -306.99 -1.56 -28.99 16 9 C -0.33 -19.28 10.16 84.04 0.85 -18.43 16 10 H 0.05 3.79 7.39 -2.91 -0.02 3.77 16 11 C -0.01 -0.82 5.50 84.93 0.47 -0.36 16 12 N -0.94 -56.35 13.96 21.66 0.30 -56.05 16 13 Si 0.97 38.30 27.74 68.60 1.90 40.20 16 14 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 15 H -0.28 -10.90 7.11 99.48 0.71 -10.20 16 16 H -0.23 -7.53 6.52 99.48 0.65 -6.88 16 17 C 0.15 2.77 2.30 44.99 0.10 2.88 16 18 H 0.06 1.54 7.58 -2.39 -0.02 1.52 16 19 C -0.15 -3.20 9.02 71.98 0.65 -2.55 16 20 N -0.71 -8.98 4.99 -442.53 -2.21 -11.19 16 21 C 0.51 7.88 7.79 87.66 0.68 8.56 16 22 O -0.58 -14.75 15.64 -3.04 -0.05 -14.79 16 23 C -0.12 -0.94 5.68 29.85 0.17 -0.77 16 24 C -0.02 -0.23 5.06 29.85 0.15 -0.08 16 25 C -0.02 -0.19 6.49 40.95 0.27 0.08 16 26 C -0.05 -0.75 11.79 83.52 0.98 0.24 16 27 N -0.54 -9.48 11.25 -200.31 -2.25 -11.74 16 28 C 0.19 1.79 13.04 180.26 2.35 4.14 16 29 N -0.56 -3.92 6.15 -186.49 -1.15 -5.07 16 30 H 0.43 0.31 8.96 -92.71 -0.83 -0.52 16 31 H 0.06 0.89 7.45 -2.38 -0.02 0.87 16 32 H 0.06 0.99 6.56 -2.39 -0.02 0.98 16 33 H 0.08 0.59 6.29 -2.39 -0.02 0.58 16 34 H 0.34 10.49 7.62 -89.69 -0.68 9.81 16 35 H 0.12 2.74 7.44 -2.38 -0.02 2.72 16 36 H 0.08 1.77 8.05 -2.39 -0.02 1.75 16 37 H 0.39 14.82 5.76 -92.71 -0.53 14.29 16 38 H 0.28 15.35 8.31 -92.71 -0.77 14.58 16 39 H 0.07 1.33 6.56 -2.39 -0.02 1.32 16 40 H 0.06 1.55 7.17 -2.39 -0.02 1.53 16 41 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.42 2.60 6.58 -92.71 -0.61 1.99 16 43 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 44 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 45 H 0.08 1.12 8.10 -2.39 -0.02 1.10 16 46 H 0.07 0.86 8.10 -2.39 -0.02 0.84 16 47 H 0.17 2.26 8.06 -2.91 -0.02 2.23 16 48 H 0.24 0.26 8.06 -2.91 -0.02 0.24 16 Total: -1.00 -88.44 394.95 -0.66 -89.10 By element: Atomic # 1 Polarization: 38.04 SS G_CDS: -1.69 Total: 36.35 kcal Atomic # 6 Polarization: 8.10 SS G_CDS: 8.64 Total: 16.73 kcal Atomic # 7 Polarization: -124.40 SS G_CDS: -9.41 Total: -133.81 kcal Atomic # 8 Polarization: -48.47 SS G_CDS: -0.10 Total: -48.57 kcal Atomic # 14 Polarization: 38.30 SS G_CDS: 1.90 Total: 40.20 kcal Total: -88.44 -0.66 -89.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282139041.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.190 kcal (2) G-P(sol) polarization free energy of solvation -88.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds