Wall clock time and date at job start Tue Mar 31 2020 19:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.47063 * 2 1 4 4 N 1.46499 * 109.47223 * 120.00138 * 2 1 3 5 5 C 1.34777 * 120.00125 * 275.00286 * 4 2 1 6 6 O 1.21282 * 119.99930 * 359.97438 * 5 4 2 7 7 C 1.50696 * 119.99855 * 179.97438 * 5 4 2 8 8 C 1.52999 * 109.47018 * 179.97438 * 7 5 4 9 9 C 1.50704 * 109.47417 * 180.02562 * 8 7 5 10 10 C 1.34664 * 126.58651 * 275.03863 * 9 8 7 11 11 N 1.34134 * 108.01786 * 179.74146 * 10 9 8 12 12 C 1.30496 * 109.25675 * 0.37372 * 11 10 9 13 13 N 1.35047 * 108.70161 * 359.62603 * 12 11 10 14 14 H 0.96997 * 126.40535 * 180.25138 * 13 12 11 15 15 C 1.52996 * 109.47018 * 240.00126 * 2 1 3 16 16 H 1.09002 * 109.47464 * 299.99793 * 15 2 1 17 17 C 1.53005 * 109.47349 * 180.02562 * 15 2 1 18 18 N 1.46901 * 109.47152 * 60.00144 * 15 2 1 19 19 C 1.46908 * 110.99898 * 204.99897 * 18 15 2 20 20 C 1.50696 * 109.46837 * 179.97438 * 19 18 15 21 21 O 1.21296 * 120.00210 * 359.97438 * 20 19 18 22 22 N 1.34773 * 119.99920 * 180.02562 * 20 19 18 23 23 C 1.37106 * 120.00362 * 180.02562 * 22 20 19 24 24 H 1.07999 * 119.99546 * 359.97438 * 23 22 20 25 25 C 1.38947 * 119.99947 * 180.02562 * 23 22 20 26 26 N 1.31410 * 120.00272 * 359.97438 * 25 23 22 27 27 Si 1.86807 * 119.99539 * 179.97438 * 25 23 22 28 28 H 1.48503 * 109.47176 * 359.97438 * 27 25 23 29 29 H 1.48497 * 109.46863 * 120.00017 * 27 25 23 30 30 H 1.48501 * 109.46801 * 239.99751 * 27 25 23 31 31 H 1.09006 * 109.46858 * 59.99870 * 1 2 3 32 32 H 1.08995 * 109.47063 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46774 * 300.00093 * 1 2 3 34 34 H 0.97010 * 120.00024 * 94.99594 * 4 2 1 35 35 H 1.08999 * 109.47441 * 59.99731 * 7 5 4 36 36 H 1.08998 * 109.47505 * 299.99456 * 7 5 4 37 37 H 1.08992 * 109.47476 * 59.99861 * 8 7 5 38 38 H 1.09004 * 109.47205 * 299.99755 * 8 7 5 39 39 H 1.07998 * 125.99171 * 359.92955 * 10 9 8 40 40 H 1.08002 * 125.65353 * 179.89694 * 12 11 10 41 41 H 1.08995 * 109.47413 * 180.02562 * 17 15 2 42 42 H 1.09002 * 109.46527 * 300.00193 * 17 15 2 43 43 H 1.09000 * 109.47262 * 59.99731 * 17 15 2 44 44 H 1.00897 * 110.99794 * 328.95261 * 18 15 2 45 45 H 1.08991 * 109.46927 * 299.99860 * 19 18 15 46 46 H 1.08999 * 109.46969 * 59.99995 * 19 18 15 47 47 H 0.97002 * 120.00334 * 359.97438 * 22 20 19 48 48 H 0.96999 * 119.99301 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1471 -0.0183 2.3571 6 8 1.8590 1.1585 2.4116 7 6 2.6489 -0.7290 3.5877 8 6 2.7010 0.2543 4.7587 9 6 3.2034 -0.4561 5.9892 10 6 2.4671 -1.1748 6.8580 11 7 3.2885 -1.6445 7.8087 12 6 4.5045 -1.2376 7.5664 13 7 4.4960 -0.4956 6.4381 14 1 5.2626 -0.0703 6.0230 15 6 2.0400 -0.7212 -1.2492 16 1 1.6767 -1.7489 -1.2493 17 6 3.5701 -0.7218 -1.2490 18 7 1.5503 -0.0287 -2.4487 19 6 1.4876 -0.9438 -3.5962 20 6 0.9815 -0.1996 -4.8049 21 8 0.7004 0.9772 -4.7189 22 7 0.8404 -0.8419 -5.9814 23 6 0.3805 -0.1648 -7.0813 24 1 0.1310 0.8832 -7.0048 25 6 0.2345 -0.8271 -8.2940 26 7 0.5377 -2.1024 -8.3868 27 14 -0.3927 0.0954 -9.7924 28 1 -0.6611 1.5094 -9.4266 29 1 0.6305 0.0472 -10.8674 30 1 -1.6469 -0.5375 -10.2740 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 2.2491 -1.6319 1.1526 35 1 3.6480 -1.1215 3.3985 36 1 1.9760 -1.5507 3.8325 37 1 1.7022 0.6472 4.9481 38 1 3.3742 1.0758 4.5137 39 1 1.4025 -1.3458 6.7980 40 1 5.3744 -1.4611 8.1662 41 1 3.9334 -1.2352 -2.1392 42 1 3.9337 0.3058 -1.2487 43 1 3.9331 -1.2359 -0.3590 44 1 0.6527 0.3993 -2.2779 45 1 2.4829 -1.3374 -3.8018 46 1 0.8112 -1.7674 -3.3675 47 1 1.0649 -1.7830 -6.0502 48 1 0.4354 -2.5647 -9.2334 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282139043.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:33 Heat of formation + Delta-G solvation = -25.161193 kcal Electronic energy + Delta-G solvation = -27906.693888 eV Core-core repulsion = 23804.130355 eV Total energy + Delta-G solvation = -4102.563533 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.45779 -40.24130 -38.52170 -37.36945 -34.55726 -34.32539 -33.81823 -32.74738 -31.33698 -30.92163 -29.92365 -29.00746 -26.44572 -25.16655 -24.27189 -23.08827 -21.96349 -21.19926 -20.68721 -20.35625 -19.32491 -18.40224 -17.95606 -17.36071 -16.58430 -16.11227 -15.99636 -15.47182 -15.36731 -14.86871 -14.62578 -14.44876 -14.16929 -14.08464 -13.86987 -13.81812 -13.57575 -13.39298 -13.31522 -12.90128 -12.60591 -12.47989 -12.39005 -11.96313 -11.74275 -11.70698 -11.59253 -11.46903 -11.36472 -11.07852 -10.66770 -10.45917 -10.39018 -10.35542 -10.24374 -10.13245 -9.53936 -9.33161 -8.80027 -8.48651 -8.13775 -7.98210 -6.43820 -3.84574 1.57201 2.36593 2.63369 2.73515 2.90780 3.15124 3.25969 3.33397 3.88193 4.06946 4.16674 4.31207 4.34388 4.48589 4.51360 4.53366 4.79229 4.80307 4.95392 5.05531 5.07661 5.11839 5.15441 5.23048 5.28243 5.32547 5.45614 5.57681 5.60697 5.62046 5.74390 5.83396 5.85299 5.92152 5.93130 6.09505 6.18554 6.24699 6.30659 6.31371 6.91350 7.14290 7.22062 7.53777 7.59869 7.63352 7.95400 8.04564 8.58975 9.16098 9.52020 10.03297 10.73955 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.041860 B = 0.001486 C = 0.001470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.742849 B =18842.952211 C =19048.870122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.140 3.860 3 H 0.099 0.901 4 N -0.721 5.721 5 C 0.514 3.486 6 O -0.537 6.537 7 C -0.135 4.135 8 C -0.028 4.028 9 C -0.022 4.022 10 C -0.023 4.023 11 N -0.495 5.495 12 C 0.182 3.818 13 N -0.567 5.567 14 H 0.420 0.580 15 C 0.077 3.923 16 H 0.046 0.954 17 C -0.139 4.139 18 N -0.661 5.661 19 C 0.052 3.948 20 C 0.440 3.560 21 O -0.582 6.582 22 N -0.563 5.563 23 C -0.299 4.299 24 H 0.104 0.896 25 C 0.022 3.978 26 N -0.902 5.902 27 Si 0.929 3.071 28 H -0.268 1.268 29 H -0.281 1.281 30 H -0.282 1.282 31 H 0.073 0.927 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.399 0.601 35 H 0.091 0.909 36 H 0.099 0.901 37 H 0.097 0.903 38 H 0.079 0.921 39 H 0.169 0.831 40 H 0.207 0.793 41 H 0.058 0.942 42 H 0.063 0.937 43 H 0.051 0.949 44 H 0.352 0.648 45 H 0.086 0.914 46 H 0.044 0.956 47 H 0.392 0.608 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.479 -3.493 27.296 28.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.035 3.965 3 H 0.117 0.883 4 N -0.373 5.373 5 C 0.300 3.700 6 O -0.414 6.414 7 C -0.176 4.176 8 C -0.067 4.067 9 C -0.137 4.137 10 C -0.171 4.171 11 N -0.214 5.214 12 C -0.102 4.102 13 N -0.171 5.171 14 H 0.257 0.743 15 C -0.033 4.033 16 H 0.064 0.936 17 C -0.197 4.197 18 N -0.297 5.297 19 C -0.081 4.081 20 C 0.226 3.774 21 O -0.466 6.466 22 N -0.200 5.200 23 C -0.429 4.429 24 H 0.122 0.878 25 C -0.179 4.179 26 N -0.543 5.543 27 Si 0.756 3.244 28 H -0.192 1.192 29 H -0.207 1.207 30 H -0.208 1.208 31 H 0.092 0.908 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.233 0.767 35 H 0.109 0.891 36 H 0.117 0.883 37 H 0.115 0.885 38 H 0.097 0.903 39 H 0.187 0.813 40 H 0.224 0.776 41 H 0.077 0.923 42 H 0.082 0.918 43 H 0.070 0.930 44 H 0.175 0.825 45 H 0.104 0.896 46 H 0.062 0.938 47 H 0.225 0.775 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 8.384 -2.220 27.729 29.054 hybrid contribution -0.093 -0.720 -1.579 1.738 sum 8.291 -2.940 26.149 27.589 Atomic orbital electron populations 1.22257 0.95179 1.02215 1.03206 1.21082 0.93972 0.98233 0.83169 0.88274 1.46035 1.67548 1.13998 1.09737 1.20586 0.77598 0.87376 0.84474 1.90740 1.49764 1.15955 1.84945 1.21670 1.03446 0.99812 0.92667 1.19750 1.03274 0.95980 0.87737 1.21312 0.84485 1.06989 1.00932 1.22161 0.99968 1.01530 0.93437 1.70301 1.00544 1.23937 1.26590 1.25000 0.98357 0.97122 0.89745 1.43345 1.09444 1.41653 1.22641 0.74262 1.21736 0.96478 0.95855 0.89267 0.93597 1.21802 0.94234 1.02729 1.00945 1.60175 1.35386 1.31860 1.02273 1.21721 1.01324 0.93837 0.91217 1.19787 0.85011 0.88208 0.84439 1.90533 1.55247 1.16118 1.84724 1.41866 1.57740 1.12420 1.07986 1.19766 1.39828 0.96481 0.86794 0.87832 1.25259 0.97643 0.95774 0.99239 1.69619 1.48730 1.08858 1.27109 0.85802 0.78223 0.79659 0.80679 1.19187 1.20738 1.20772 0.90801 0.92502 0.91663 0.76664 0.89060 0.88263 0.88476 0.90253 0.81335 0.77611 0.92292 0.91774 0.93023 0.82544 0.89555 0.93826 0.77486 0.91930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.81 9.25 37.16 0.34 -1.47 16 2 C 0.14 1.48 2.29 -67.93 -0.16 1.32 16 3 H 0.10 1.30 7.58 -51.93 -0.39 0.91 16 4 N -0.72 -5.64 4.38 -53.81 -0.24 -5.88 16 5 C 0.51 4.49 7.79 -10.99 -0.09 4.41 16 6 O -0.54 -6.95 15.64 5.56 0.09 -6.86 16 7 C -0.14 -0.72 5.68 -27.89 -0.16 -0.88 16 8 C -0.03 -0.17 5.06 -27.88 -0.14 -0.31 16 9 C -0.02 -0.14 6.49 -81.60 -0.53 -0.67 16 10 C -0.02 -0.19 11.79 -17.81 -0.21 -0.40 16 11 N -0.49 -4.65 11.25 -14.66 -0.16 -4.82 16 12 C 0.18 1.09 13.04 -90.37 -1.18 -0.09 16 13 N -0.57 -2.74 6.15 -10.30 -0.06 -2.80 16 14 H 0.42 0.80 8.96 -40.82 -0.37 0.43 16 15 C 0.08 0.87 2.28 -67.71 -0.15 0.71 16 16 H 0.05 0.47 7.80 -51.93 -0.40 0.06 16 17 C -0.14 -1.46 9.26 37.16 0.34 -1.12 16 18 N -0.66 -10.20 5.93 -107.99 -0.64 -10.84 16 19 C 0.05 0.88 5.97 -4.97 -0.03 0.85 16 20 C 0.44 10.24 7.82 -10.99 -0.09 10.15 16 21 O -0.58 -15.69 15.78 5.54 0.09 -15.61 16 22 N -0.56 -14.10 5.29 -10.96 -0.06 -14.16 16 23 C -0.30 -8.29 9.68 -14.93 -0.14 -8.44 16 24 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 25 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 26 N -0.90 -24.30 13.05 55.50 0.72 -23.57 16 27 Si 0.93 20.92 29.55 -169.99 -5.02 15.90 16 28 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 29 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 30 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 31 H 0.07 0.86 6.21 -51.93 -0.32 0.54 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.40 2.10 8.39 -40.82 -0.34 1.76 16 35 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.10 0.66 8.10 -51.93 -0.42 0.24 16 38 H 0.08 0.51 8.10 -51.93 -0.42 0.09 16 39 H 0.17 1.13 8.06 -52.49 -0.42 0.71 16 40 H 0.21 0.45 8.06 -52.49 -0.42 0.03 16 41 H 0.06 0.65 7.45 -51.93 -0.39 0.27 16 42 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.05 0.41 7.44 -51.93 -0.39 0.02 16 44 H 0.35 5.67 5.86 -39.29 -0.23 5.43 16 45 H 0.09 1.35 7.44 -51.93 -0.39 0.97 16 46 H 0.04 0.66 8.06 -51.93 -0.42 0.24 16 47 H 0.39 9.34 7.90 -40.82 -0.32 9.02 16 48 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 401.84 15.07 6.06 6.06 Total: -1.00 -35.92 401.84 -8.79 -44.71 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: -7.27 Total: 13.32 kcal Atomic # 6 Polarization: 6.85 SS G_CDS: -2.28 Total: 4.57 kcal Atomic # 7 Polarization: -61.64 SS G_CDS: -0.44 Total: -62.08 kcal Atomic # 8 Polarization: -22.64 SS G_CDS: 0.17 Total: -22.47 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -35.92 -8.79 -44.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282139043.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.544 kcal (2) G-P(sol) polarization free energy of solvation -35.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds