Wall clock time and date at job start Tue Mar 31 2020 19:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.47063 * 2 1 4 4 N 1.46499 * 109.47223 * 120.00138 * 2 1 3 5 5 C 1.34777 * 120.00125 * 275.00286 * 4 2 1 6 6 O 1.21282 * 119.99930 * 359.97438 * 5 4 2 7 7 C 1.50696 * 119.99855 * 179.97438 * 5 4 2 8 8 C 1.52999 * 109.47018 * 179.97438 * 7 5 4 9 9 C 1.50704 * 109.47417 * 180.02562 * 8 7 5 10 10 C 1.34664 * 126.58651 * 275.03863 * 9 8 7 11 11 N 1.34134 * 108.01786 * 179.74146 * 10 9 8 12 12 C 1.30496 * 109.25675 * 0.37372 * 11 10 9 13 13 N 1.35047 * 108.70161 * 359.62603 * 12 11 10 14 14 H 0.96997 * 126.40535 * 180.25138 * 13 12 11 15 15 C 1.52996 * 109.47018 * 240.00126 * 2 1 3 16 16 H 1.09002 * 109.47464 * 299.99793 * 15 2 1 17 17 C 1.53005 * 109.47349 * 180.02562 * 15 2 1 18 18 N 1.46901 * 109.47152 * 60.00144 * 15 2 1 19 19 C 1.46908 * 110.99898 * 204.99897 * 18 15 2 20 20 C 1.50696 * 109.46837 * 179.97438 * 19 18 15 21 21 O 1.21296 * 120.00210 * 359.97438 * 20 19 18 22 22 N 1.34773 * 119.99920 * 180.02562 * 20 19 18 23 23 C 1.37106 * 120.00362 * 180.02562 * 22 20 19 24 24 H 1.07999 * 119.99546 * 359.97438 * 23 22 20 25 25 C 1.38947 * 119.99947 * 180.02562 * 23 22 20 26 26 N 1.31410 * 120.00272 * 359.97438 * 25 23 22 27 27 Si 1.86807 * 119.99539 * 179.97438 * 25 23 22 28 28 H 1.48503 * 109.47176 * 359.97438 * 27 25 23 29 29 H 1.48497 * 109.46863 * 120.00017 * 27 25 23 30 30 H 1.48501 * 109.46801 * 239.99751 * 27 25 23 31 31 H 1.09006 * 109.46858 * 59.99870 * 1 2 3 32 32 H 1.08995 * 109.47063 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46774 * 300.00093 * 1 2 3 34 34 H 0.97010 * 120.00024 * 94.99594 * 4 2 1 35 35 H 1.08999 * 109.47441 * 59.99731 * 7 5 4 36 36 H 1.08998 * 109.47505 * 299.99456 * 7 5 4 37 37 H 1.08992 * 109.47476 * 59.99861 * 8 7 5 38 38 H 1.09004 * 109.47205 * 299.99755 * 8 7 5 39 39 H 1.07998 * 125.99171 * 359.92955 * 10 9 8 40 40 H 1.08002 * 125.65353 * 179.89694 * 12 11 10 41 41 H 1.08995 * 109.47413 * 180.02562 * 17 15 2 42 42 H 1.09002 * 109.46527 * 300.00193 * 17 15 2 43 43 H 1.09000 * 109.47262 * 59.99731 * 17 15 2 44 44 H 1.00897 * 110.99794 * 328.95261 * 18 15 2 45 45 H 1.08991 * 109.46927 * 299.99860 * 19 18 15 46 46 H 1.08999 * 109.46969 * 59.99995 * 19 18 15 47 47 H 0.97002 * 120.00334 * 359.97438 * 22 20 19 48 48 H 0.96999 * 119.99301 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1471 -0.0183 2.3571 6 8 1.8590 1.1585 2.4116 7 6 2.6489 -0.7290 3.5877 8 6 2.7010 0.2543 4.7587 9 6 3.2034 -0.4561 5.9892 10 6 2.4671 -1.1748 6.8580 11 7 3.2885 -1.6445 7.8087 12 6 4.5045 -1.2376 7.5664 13 7 4.4960 -0.4956 6.4381 14 1 5.2626 -0.0703 6.0230 15 6 2.0400 -0.7212 -1.2492 16 1 1.6767 -1.7489 -1.2493 17 6 3.5701 -0.7218 -1.2490 18 7 1.5503 -0.0287 -2.4487 19 6 1.4876 -0.9438 -3.5962 20 6 0.9815 -0.1996 -4.8049 21 8 0.7004 0.9772 -4.7189 22 7 0.8404 -0.8419 -5.9814 23 6 0.3805 -0.1648 -7.0813 24 1 0.1310 0.8832 -7.0048 25 6 0.2345 -0.8271 -8.2940 26 7 0.5377 -2.1024 -8.3868 27 14 -0.3927 0.0954 -9.7924 28 1 -0.6611 1.5094 -9.4266 29 1 0.6305 0.0472 -10.8674 30 1 -1.6469 -0.5375 -10.2740 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 2.2491 -1.6319 1.1526 35 1 3.6480 -1.1215 3.3985 36 1 1.9760 -1.5507 3.8325 37 1 1.7022 0.6472 4.9481 38 1 3.3742 1.0758 4.5137 39 1 1.4025 -1.3458 6.7980 40 1 5.3744 -1.4611 8.1662 41 1 3.9334 -1.2352 -2.1392 42 1 3.9337 0.3058 -1.2487 43 1 3.9331 -1.2359 -0.3590 44 1 0.6527 0.3993 -2.2779 45 1 2.4829 -1.3374 -3.8018 46 1 0.8112 -1.7674 -3.3675 47 1 1.0649 -1.7830 -6.0502 48 1 0.4354 -2.5647 -9.2334 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282139043.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:33 Heat of formation + Delta-G solvation = -52.770023 kcal Electronic energy + Delta-G solvation = -27907.891096 eV Core-core repulsion = 23804.130355 eV Total energy + Delta-G solvation = -4103.760741 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.92750 -41.02956 -40.17382 -38.52898 -36.05063 -35.30875 -34.90325 -33.28853 -33.22057 -31.95484 -30.84459 -29.56650 -28.02146 -25.91894 -25.77122 -24.00548 -22.43577 -21.72820 -21.51893 -21.12804 -21.08563 -19.92625 -18.88306 -18.27332 -17.54490 -17.41230 -16.86012 -16.61904 -16.41823 -16.00670 -15.76935 -15.46700 -15.41244 -15.16248 -14.90898 -14.65733 -14.41636 -14.22575 -14.21574 -13.93310 -13.67398 -13.51160 -13.45648 -13.15883 -13.05420 -12.90010 -12.65696 -12.58440 -12.40421 -12.31234 -12.14226 -12.11721 -11.60484 -11.51278 -11.00062 -10.91584 -10.86258 -10.34257 -10.10766 -10.01236 -9.35392 -9.29490 -8.47020 -5.95446 1.11181 1.36477 1.42174 1.56048 1.68412 2.04697 2.06898 2.24073 2.29558 2.37029 2.99190 3.20565 3.50563 3.58049 3.69614 3.93821 3.96496 4.04629 4.09504 4.18922 4.30614 4.31702 4.44783 4.46654 4.53639 4.59482 4.60005 4.64557 4.70017 4.73635 4.83780 4.86870 4.97819 5.02663 5.11663 5.20697 5.37431 5.39610 5.41634 5.48017 5.81100 5.90326 6.11161 6.37836 6.58667 6.59729 6.60540 7.13017 7.16463 7.30961 7.56441 8.12080 8.70478 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.041860 B = 0.001486 C = 0.001470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.742849 B =18842.952211 C =19048.870122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.149 3.851 3 H 0.069 0.931 4 N -0.708 5.708 5 C 0.513 3.487 6 O -0.584 6.584 7 C -0.123 4.123 8 C -0.022 4.022 9 C -0.017 4.017 10 C -0.048 4.048 11 N -0.542 5.542 12 C 0.188 3.812 13 N -0.558 5.558 14 H 0.434 0.566 15 C 0.082 3.918 16 H 0.071 0.929 17 C -0.137 4.137 18 N -0.680 5.680 19 C 0.068 3.932 20 C 0.436 3.564 21 O -0.625 6.625 22 N -0.572 5.572 23 C -0.334 4.334 24 H 0.077 0.923 25 C -0.011 4.011 26 N -0.919 5.919 27 Si 0.991 3.009 28 H -0.275 1.275 29 H -0.271 1.271 30 H -0.270 1.270 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.055 0.945 34 H 0.416 0.584 35 H 0.115 0.885 36 H 0.117 0.883 37 H 0.085 0.915 38 H 0.075 0.925 39 H 0.171 0.829 40 H 0.241 0.759 41 H 0.055 0.945 42 H 0.043 0.957 43 H 0.082 0.918 44 H 0.345 0.655 45 H 0.105 0.895 46 H 0.071 0.929 47 H 0.397 0.603 48 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.706 -5.379 27.921 30.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.044 3.956 3 H 0.087 0.913 4 N -0.361 5.361 5 C 0.301 3.699 6 O -0.464 6.464 7 C -0.163 4.163 8 C -0.061 4.061 9 C -0.133 4.133 10 C -0.195 4.195 11 N -0.261 5.261 12 C -0.097 4.097 13 N -0.162 5.162 14 H 0.275 0.725 15 C -0.027 4.027 16 H 0.089 0.911 17 C -0.195 4.195 18 N -0.316 5.316 19 C -0.065 4.065 20 C 0.224 3.776 21 O -0.511 6.511 22 N -0.209 5.209 23 C -0.464 4.464 24 H 0.095 0.905 25 C -0.211 4.211 26 N -0.560 5.560 27 Si 0.815 3.185 28 H -0.199 1.199 29 H -0.196 1.196 30 H -0.196 1.196 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.074 0.926 34 H 0.254 0.746 35 H 0.133 0.867 36 H 0.135 0.865 37 H 0.103 0.897 38 H 0.093 0.907 39 H 0.189 0.811 40 H 0.257 0.743 41 H 0.074 0.926 42 H 0.062 0.938 43 H 0.101 0.899 44 H 0.167 0.833 45 H 0.123 0.877 46 H 0.089 0.911 47 H 0.231 0.769 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 9.649 -4.165 28.356 30.241 hybrid contribution -0.439 -0.110 -1.698 1.757 sum 9.210 -4.275 26.659 28.527 Atomic orbital electron populations 1.22195 0.95303 1.02879 1.02004 1.20766 0.93768 0.96989 0.84124 0.91303 1.45858 1.66920 1.14679 1.08623 1.21189 0.76586 0.86850 0.85309 1.90732 1.51803 1.18197 1.85644 1.21631 1.04917 0.99440 0.90271 1.19645 1.02519 0.96024 0.87948 1.21231 0.85015 1.06452 1.00636 1.22363 1.00507 1.02601 0.94073 1.70270 1.02121 1.25842 1.27897 1.25655 0.98425 0.95845 0.89734 1.43325 1.09424 1.41181 1.22289 0.72496 1.21785 0.96871 0.96550 0.87538 0.91136 1.21804 0.93467 1.01857 1.02324 1.60170 1.35268 1.32614 1.03569 1.21571 1.02443 0.93621 0.88831 1.20922 0.83217 0.87983 0.85508 1.90503 1.56664 1.18347 1.85617 1.41920 1.58243 1.12586 1.08186 1.19699 1.42106 0.95932 0.88660 0.90457 1.25998 0.97209 0.96602 1.01258 1.69669 1.48609 1.09602 1.28095 0.84896 0.78196 0.78029 0.77363 1.19943 1.19616 1.19556 0.92278 0.90808 0.92608 0.74616 0.86730 0.86482 0.89676 0.90680 0.81124 0.74307 0.92584 0.93799 0.89940 0.83277 0.87667 0.91121 0.76897 0.91297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.43 9.25 71.98 0.67 -2.77 16 2 C 0.15 3.00 2.29 44.99 0.10 3.11 16 3 H 0.07 1.85 7.58 -2.39 -0.02 1.83 16 4 N -0.71 -9.51 4.38 -442.54 -1.94 -11.45 16 5 C 0.51 8.23 7.79 87.66 0.68 8.91 16 6 O -0.58 -15.14 15.64 -3.04 -0.05 -15.19 16 7 C -0.12 -1.01 5.68 29.85 0.17 -0.84 16 8 C -0.02 -0.24 5.06 29.85 0.15 -0.09 16 9 C -0.02 -0.20 6.49 40.95 0.27 0.07 16 10 C -0.05 -0.76 11.79 83.52 0.98 0.22 16 11 N -0.54 -9.73 11.25 -200.31 -2.25 -11.98 16 12 C 0.19 1.88 13.04 180.26 2.35 4.24 16 13 N -0.56 -4.21 6.15 -186.49 -1.15 -5.36 16 14 H 0.43 0.56 8.96 -92.71 -0.83 -0.27 16 15 C 0.08 1.67 2.28 44.92 0.10 1.78 16 16 H 0.07 1.15 7.80 -2.39 -0.02 1.13 16 17 C -0.14 -2.56 9.26 71.98 0.67 -1.89 16 18 N -0.68 -20.47 5.93 -495.57 -2.94 -23.41 16 19 C 0.07 2.19 5.97 85.55 0.51 2.70 16 20 C 0.44 20.46 7.82 87.66 0.69 21.14 16 21 O -0.62 -34.67 15.78 -3.08 -0.05 -34.72 16 22 N -0.57 -28.94 5.29 -306.99 -1.62 -30.57 16 23 C -0.33 -18.93 9.68 84.04 0.81 -18.11 16 24 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 25 C -0.01 -0.57 5.50 84.93 0.47 -0.11 16 26 N -0.92 -48.92 13.05 21.66 0.28 -48.64 16 27 Si 0.99 42.74 29.55 68.60 2.03 44.77 16 28 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 29 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 30 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 31 H 0.06 1.41 6.21 -2.38 -0.01 1.39 16 32 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.42 2.83 8.39 -92.70 -0.78 2.05 16 35 H 0.11 0.47 8.14 -2.39 -0.02 0.46 16 36 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.08 1.15 8.10 -2.39 -0.02 1.13 16 38 H 0.07 0.90 8.10 -2.38 -0.02 0.88 16 39 H 0.17 2.32 8.06 -2.91 -0.02 2.30 16 40 H 0.24 0.38 8.06 -2.91 -0.02 0.35 16 41 H 0.06 1.09 7.45 -2.39 -0.02 1.08 16 42 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.08 1.02 7.44 -2.39 -0.02 1.00 16 44 H 0.35 11.18 5.86 -89.70 -0.53 10.66 16 45 H 0.11 3.05 7.44 -2.39 -0.02 3.04 16 46 H 0.07 1.94 8.06 -2.39 -0.02 1.92 16 47 H 0.40 18.90 7.90 -92.71 -0.73 18.17 16 48 H 0.28 13.79 8.31 -92.71 -0.77 13.02 16 Total: -1.00 -80.63 401.84 -0.91 -81.54 By element: Atomic # 1 Polarization: 38.49 SS G_CDS: -1.84 Total: 36.65 kcal Atomic # 6 Polarization: 9.74 SS G_CDS: 8.62 Total: 18.36 kcal Atomic # 7 Polarization: -121.78 SS G_CDS: -9.62 Total: -131.41 kcal Atomic # 8 Polarization: -49.82 SS G_CDS: -0.10 Total: -49.91 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -80.63 -0.91 -81.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282139043.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.772 kcal (2) G-P(sol) polarization free energy of solvation -80.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds