Wall clock time and date at job start Tue Mar 31 2020 19:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47202 * 2 1 4 4 C 1.53002 * 109.47119 * 240.00197 * 2 1 3 5 5 N 1.46499 * 109.47052 * 184.99849 * 4 2 1 6 6 C 1.46504 * 119.99815 * 269.99694 * 5 4 2 7 7 C 1.34777 * 120.00125 * 90.00340 * 5 4 2 8 8 O 1.21282 * 119.99930 * 359.97438 * 7 5 4 9 9 C 1.50696 * 119.99855 * 179.97438 * 7 5 4 10 10 C 1.52999 * 109.47018 * 179.97438 * 9 7 5 11 11 C 1.50704 * 109.47417 * 180.02562 * 10 9 7 12 12 C 1.34664 * 126.58651 * 275.03863 * 11 10 9 13 13 N 1.34134 * 108.01786 * 179.74146 * 12 11 10 14 14 C 1.30496 * 109.25675 * 0.37372 * 13 12 11 15 15 N 1.35047 * 108.70161 * 359.62603 * 14 13 12 16 16 H 0.96997 * 126.40535 * 180.25138 * 15 14 13 17 17 N 1.46903 * 109.47412 * 120.00122 * 2 1 3 18 18 C 1.46897 * 110.99807 * 274.99834 * 17 2 1 19 19 C 1.50700 * 109.47104 * 179.97438 * 18 17 2 20 20 O 1.21299 * 119.99589 * 0.02562 * 19 18 17 21 21 N 1.34770 * 120.00200 * 180.02562 * 19 18 17 22 22 C 1.37101 * 120.00057 * 180.02562 * 21 19 18 23 23 H 1.08001 * 120.00151 * 359.97438 * 22 21 19 24 24 C 1.38955 * 120.00038 * 180.02562 * 22 21 19 25 25 N 1.31404 * 119.99620 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 119.99809 * 179.97438 * 24 22 21 27 27 H 1.48495 * 109.47226 * 59.99837 * 26 24 22 28 28 H 1.48499 * 109.46716 * 179.97438 * 26 24 22 29 29 H 1.48503 * 109.46942 * 299.99412 * 26 24 22 30 30 H 1.08993 * 109.47278 * 60.00070 * 1 2 3 31 31 H 1.09001 * 109.47202 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47219 * 299.99303 * 1 2 3 33 33 H 1.09005 * 109.46846 * 64.99637 * 4 2 1 34 34 H 1.09000 * 109.46947 * 304.99556 * 4 2 1 35 35 H 1.09000 * 109.47264 * 269.99695 * 6 5 4 36 36 H 1.08998 * 109.47208 * 30.00488 * 6 5 4 37 37 H 1.09006 * 109.47010 * 150.00190 * 6 5 4 38 38 H 1.08999 * 109.47441 * 59.99731 * 9 7 5 39 39 H 1.08998 * 109.47505 * 299.99456 * 9 7 5 40 40 H 1.08992 * 109.47476 * 59.99861 * 10 9 7 41 41 H 1.09004 * 109.47205 * 299.99755 * 10 9 7 42 42 H 1.07998 * 125.99171 * 359.92955 * 12 11 10 43 43 H 1.08002 * 125.65353 * 179.89694 * 14 13 12 44 44 H 1.00904 * 111.00138 * 151.04623 * 17 2 1 45 45 H 1.08990 * 109.47610 * 300.00217 * 18 17 2 46 46 H 1.09007 * 109.47225 * 60.00144 * 18 17 2 47 47 H 0.97003 * 120.00114 * 0.02562 * 21 19 18 48 48 H 0.97003 * 119.99701 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5000 -0.8263 -1.1906 6 6 4.3342 0.2342 -1.7614 7 6 4.0758 -1.8986 -0.6117 8 8 3.3851 -2.7764 -0.1389 9 6 5.5776 -2.0069 -0.5519 10 6 5.9674 -3.3086 0.1513 11 6 7.4694 -3.4167 0.2117 12 6 8.2784 -3.9027 -0.7489 13 7 9.5425 -3.8194 -0.3080 14 6 9.5468 -3.3077 0.8924 15 7 8.2734 -3.0391 1.2532 16 1 7.9828 -2.6509 2.0932 17 7 2.0197 -0.6925 1.1994 18 6 2.0825 0.2226 2.3468 19 6 2.5875 -0.5218 3.5559 20 8 2.8679 -1.6988 3.4701 21 7 2.7275 0.1202 4.7326 22 6 3.1873 -0.5569 5.8325 23 1 3.4370 -1.6049 5.7561 24 6 3.3312 0.1048 7.0458 25 7 3.0269 1.3798 7.1389 26 14 3.9571 -0.8180 8.5446 27 1 5.3135 -1.3538 8.2651 28 1 4.0200 0.1070 9.7046 29 1 3.0357 -1.9404 8.8552 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5137 0.8900 33 1 1.7515 -0.1582 -2.1370 34 1 1.6054 -1.7198 -1.2952 35 1 4.5424 0.0094 -2.8074 36 1 3.8090 1.1867 -1.6919 37 1 5.2722 0.2954 -1.2093 38 1 5.9813 -1.1598 0.0027 39 1 5.9827 -2.0049 -1.5638 40 1 5.5639 -4.1560 -0.4029 41 1 5.5625 -3.3103 1.1633 42 1 7.9647 -4.2887 -1.7075 43 1 10.4238 -3.1248 1.4956 44 1 2.9174 -1.1205 1.0287 45 1 2.7588 1.0461 2.1182 46 1 1.0871 0.6163 2.5525 47 1 2.5029 1.0613 4.8014 48 1 3.1277 1.8419 7.9858 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283620916.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:11 Heat of formation + Delta-G solvation = -10.754212 kcal Electronic energy + Delta-G solvation = -29723.646875 eV Core-core repulsion = 25621.708076 eV Total energy + Delta-G solvation = -4101.938799 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.12063 -40.31104 -38.24943 -36.77916 -34.99795 -34.04159 -33.82846 -32.38290 -31.33980 -30.89683 -29.09855 -27.59584 -26.38055 -26.17908 -24.20583 -23.70385 -21.60759 -20.88011 -20.43375 -19.42303 -19.05758 -18.09200 -17.88578 -16.92729 -16.72415 -16.34202 -15.70423 -15.24456 -15.03615 -14.95223 -14.50958 -14.45602 -13.96247 -13.87026 -13.79272 -13.53904 -13.41932 -13.02475 -12.81311 -12.79767 -12.58695 -12.46382 -12.20164 -11.97181 -11.83548 -11.65752 -11.49481 -11.40925 -11.27075 -11.09451 -10.86070 -10.46054 -10.22245 -10.12773 -10.07342 -9.80639 -9.50059 -8.80166 -8.46826 -8.37736 -7.98238 -7.91364 -6.42342 -3.82964 1.92205 2.58579 2.80723 3.05599 3.09555 3.17823 3.23676 3.28042 3.92548 4.10276 4.28290 4.39218 4.61300 4.75969 4.84600 4.85608 4.86769 4.97333 5.08539 5.13574 5.23875 5.26037 5.28108 5.31813 5.32789 5.44796 5.45862 5.47338 5.64778 5.75214 5.77399 5.82626 5.98841 6.01811 6.05171 6.22215 6.23820 6.31722 6.44680 6.63015 7.17976 7.27048 7.36556 7.53876 7.83247 7.94494 8.06406 8.13860 8.62406 9.17899 9.54883 10.07667 10.75567 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.007027 B = 0.003892 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3983.620723 B = 7193.102301 C =10535.840226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.066 3.934 3 H 0.038 0.962 4 C 0.112 3.888 5 N -0.627 5.627 6 C 0.077 3.923 7 C 0.504 3.496 8 O -0.502 6.502 9 C -0.131 4.131 10 C -0.034 4.034 11 C -0.015 4.015 12 C -0.029 4.029 13 N -0.498 5.498 14 C 0.180 3.820 15 N -0.564 5.564 16 H 0.423 0.577 17 N -0.657 5.657 18 C 0.049 3.951 19 C 0.441 3.559 20 O -0.576 6.576 21 N -0.566 5.566 22 C -0.299 4.299 23 H 0.101 0.899 24 C 0.022 3.978 25 N -0.903 5.903 26 Si 0.930 3.070 27 H -0.275 1.275 28 H -0.284 1.284 29 H -0.273 1.273 30 H 0.052 0.948 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.081 0.919 34 H 0.094 0.906 35 H 0.058 0.942 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.090 0.910 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.087 0.913 42 H 0.168 0.832 43 H 0.206 0.794 44 H 0.353 0.647 45 H 0.035 0.965 46 H 0.084 0.916 47 H 0.391 0.609 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.045 1.245 -18.676 19.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.045 4.045 3 H 0.056 0.944 4 C -0.010 4.010 5 N -0.363 5.363 6 C -0.066 4.066 7 C 0.292 3.708 8 O -0.375 6.375 9 C -0.172 4.172 10 C -0.073 4.073 11 C -0.131 4.131 12 C -0.177 4.177 13 N -0.217 5.217 14 C -0.104 4.104 15 N -0.167 5.167 16 H 0.262 0.738 17 N -0.296 5.296 18 C -0.084 4.084 19 C 0.226 3.774 20 O -0.459 6.459 21 N -0.204 5.204 22 C -0.428 4.428 23 H 0.119 0.881 24 C -0.179 4.179 25 N -0.545 5.545 26 Si 0.757 3.243 27 H -0.200 1.200 28 H -0.210 1.210 29 H -0.199 1.199 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.099 0.901 34 H 0.112 0.888 35 H 0.076 0.924 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.108 0.892 39 H 0.114 0.886 40 H 0.114 0.886 41 H 0.106 0.894 42 H 0.185 0.815 43 H 0.223 0.777 44 H 0.177 0.823 45 H 0.053 0.947 46 H 0.102 0.898 47 H 0.224 0.776 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.007 -0.447 -18.628 19.294 hybrid contribution 0.153 1.542 1.572 2.208 sum 5.159 1.095 -17.055 17.852 Atomic orbital electron populations 1.21744 0.94073 1.02727 1.01109 1.21929 0.96396 0.95628 0.90557 0.94366 1.21744 0.79101 1.03024 0.97159 1.47962 1.06957 1.21686 1.59680 1.21816 0.95596 0.90680 0.98547 1.20735 0.90812 0.81608 0.77681 1.90850 1.64500 1.38424 1.43752 1.21672 0.92359 0.99939 1.03185 1.19811 0.86549 0.97491 1.03431 1.21327 0.94377 1.07072 0.90328 1.22082 0.88383 1.06807 1.00403 1.70267 1.22911 1.18871 1.09607 1.24956 0.87434 1.03139 0.94890 1.43408 1.07878 1.48534 1.16909 0.73834 1.60189 1.36091 1.31107 1.02202 1.21734 1.00944 0.93845 0.91838 1.19856 0.84839 0.88269 0.84438 1.90552 1.54742 1.15922 1.84679 1.41861 1.58166 1.12383 1.07947 1.19643 1.39933 0.96368 0.86874 0.88080 1.25239 0.97780 0.95769 0.99133 1.69604 1.48812 1.08864 1.27200 0.85937 0.79336 0.78893 0.80156 1.20050 1.20964 1.19856 0.92884 0.91624 0.92325 0.90068 0.88793 0.92354 0.91036 0.90990 0.89176 0.88571 0.88574 0.89400 0.81518 0.77701 0.82283 0.94660 0.89799 0.77576 0.91873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.41 37.16 0.35 -1.26 16 2 C 0.07 0.85 2.95 -67.71 -0.20 0.65 16 3 H 0.04 0.46 7.80 -51.93 -0.40 0.05 16 4 C 0.11 1.22 5.20 -4.04 -0.02 1.20 16 5 N -0.63 -6.65 2.66 -181.56 -0.48 -7.13 16 6 C 0.08 0.53 10.24 59.85 0.61 1.14 16 7 C 0.50 6.55 6.05 -10.99 -0.07 6.49 16 8 O -0.50 -8.78 14.15 5.56 0.08 -8.70 16 9 C -0.13 -1.32 4.23 -27.89 -0.12 -1.44 16 10 C -0.03 -0.39 5.06 -27.88 -0.14 -0.53 16 11 C -0.01 -0.16 6.49 -81.60 -0.53 -0.69 16 12 C -0.03 -0.34 11.79 -17.81 -0.21 -0.55 16 13 N -0.50 -6.38 11.25 -14.66 -0.16 -6.55 16 14 C 0.18 1.84 13.04 -90.37 -1.18 0.66 16 15 N -0.56 -5.76 6.15 -10.30 -0.06 -5.82 16 16 H 0.42 3.66 8.96 -40.82 -0.37 3.30 16 17 N -0.66 -11.71 5.82 -107.99 -0.63 -12.34 16 18 C 0.05 0.93 5.96 -4.98 -0.03 0.90 16 19 C 0.44 10.76 7.82 -10.99 -0.09 10.67 16 20 O -0.58 -16.18 15.78 5.54 0.09 -16.10 16 21 N -0.57 -14.54 5.29 -10.96 -0.06 -14.60 16 22 C -0.30 -8.37 9.68 -14.93 -0.14 -8.52 16 23 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 24 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 25 N -0.90 -24.57 13.05 55.50 0.72 -23.85 16 26 Si 0.93 21.05 29.55 -169.99 -5.02 16.02 16 27 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 28 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 29 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.06 0.73 7.45 -51.93 -0.39 0.34 16 33 H 0.08 0.63 8.07 -51.93 -0.42 0.21 16 34 H 0.09 1.21 7.42 -51.93 -0.39 0.82 16 35 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.07 0.43 8.07 -51.93 -0.42 0.01 16 37 H 0.07 0.46 6.44 -51.93 -0.33 0.12 16 38 H 0.09 0.87 7.40 -51.93 -0.38 0.48 16 39 H 0.10 0.75 8.11 -51.93 -0.42 0.32 16 40 H 0.10 1.09 8.10 -51.93 -0.42 0.67 16 41 H 0.09 1.24 8.10 -51.93 -0.42 0.82 16 42 H 0.17 1.62 8.06 -52.49 -0.42 1.19 16 43 H 0.21 1.32 8.06 -52.49 -0.42 0.90 16 44 H 0.35 6.67 4.17 -39.29 -0.16 6.51 16 45 H 0.04 0.60 8.05 -51.93 -0.42 0.18 16 46 H 0.08 1.47 7.44 -51.92 -0.39 1.08 16 47 H 0.39 9.61 7.90 -40.82 -0.32 9.29 16 48 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 397.95 15.07 6.00 6.00 Total: -1.00 -36.65 397.95 -8.67 -45.32 By element: Atomic # 1 Polarization: 25.78 SS G_CDS: -7.28 Total: 18.50 kcal Atomic # 6 Polarization: 11.09 SS G_CDS: -1.86 Total: 9.23 kcal Atomic # 7 Polarization: -69.61 SS G_CDS: -0.67 Total: -70.28 kcal Atomic # 8 Polarization: -24.96 SS G_CDS: 0.17 Total: -24.79 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -36.65 -8.67 -45.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283620916.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.569 kcal (2) G-P(sol) polarization free energy of solvation -36.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds