Wall clock time and date at job start Tue Mar 31 2020 19:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47202 * 2 1 4 4 C 1.53002 * 109.47119 * 240.00197 * 2 1 3 5 5 N 1.46499 * 109.47052 * 184.99849 * 4 2 1 6 6 C 1.46504 * 119.99815 * 269.99694 * 5 4 2 7 7 C 1.34777 * 120.00125 * 90.00340 * 5 4 2 8 8 O 1.21282 * 119.99930 * 359.97438 * 7 5 4 9 9 C 1.50696 * 119.99855 * 179.97438 * 7 5 4 10 10 C 1.52999 * 109.47018 * 179.97438 * 9 7 5 11 11 C 1.50704 * 109.47417 * 180.02562 * 10 9 7 12 12 C 1.34664 * 126.58651 * 275.03863 * 11 10 9 13 13 N 1.34134 * 108.01786 * 179.74146 * 12 11 10 14 14 C 1.30496 * 109.25675 * 0.37372 * 13 12 11 15 15 N 1.35047 * 108.70161 * 359.62603 * 14 13 12 16 16 H 0.96997 * 126.40535 * 180.25138 * 15 14 13 17 17 N 1.46903 * 109.47412 * 120.00122 * 2 1 3 18 18 C 1.46897 * 110.99807 * 274.99834 * 17 2 1 19 19 C 1.50700 * 109.47104 * 179.97438 * 18 17 2 20 20 O 1.21299 * 119.99589 * 0.02562 * 19 18 17 21 21 N 1.34770 * 120.00200 * 180.02562 * 19 18 17 22 22 C 1.37101 * 120.00057 * 180.02562 * 21 19 18 23 23 H 1.08001 * 120.00151 * 359.97438 * 22 21 19 24 24 C 1.38955 * 120.00038 * 180.02562 * 22 21 19 25 25 N 1.31404 * 119.99620 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 119.99809 * 179.97438 * 24 22 21 27 27 H 1.48495 * 109.47226 * 59.99837 * 26 24 22 28 28 H 1.48499 * 109.46716 * 179.97438 * 26 24 22 29 29 H 1.48503 * 109.46942 * 299.99412 * 26 24 22 30 30 H 1.08993 * 109.47278 * 60.00070 * 1 2 3 31 31 H 1.09001 * 109.47202 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47219 * 299.99303 * 1 2 3 33 33 H 1.09005 * 109.46846 * 64.99637 * 4 2 1 34 34 H 1.09000 * 109.46947 * 304.99556 * 4 2 1 35 35 H 1.09000 * 109.47264 * 269.99695 * 6 5 4 36 36 H 1.08998 * 109.47208 * 30.00488 * 6 5 4 37 37 H 1.09006 * 109.47010 * 150.00190 * 6 5 4 38 38 H 1.08999 * 109.47441 * 59.99731 * 9 7 5 39 39 H 1.08998 * 109.47505 * 299.99456 * 9 7 5 40 40 H 1.08992 * 109.47476 * 59.99861 * 10 9 7 41 41 H 1.09004 * 109.47205 * 299.99755 * 10 9 7 42 42 H 1.07998 * 125.99171 * 359.92955 * 12 11 10 43 43 H 1.08002 * 125.65353 * 179.89694 * 14 13 12 44 44 H 1.00904 * 111.00138 * 151.04623 * 17 2 1 45 45 H 1.08990 * 109.47610 * 300.00217 * 18 17 2 46 46 H 1.09007 * 109.47225 * 60.00144 * 18 17 2 47 47 H 0.97003 * 120.00114 * 0.02562 * 21 19 18 48 48 H 0.97003 * 119.99701 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5000 -0.8263 -1.1906 6 6 4.3342 0.2342 -1.7614 7 6 4.0758 -1.8986 -0.6117 8 8 3.3851 -2.7764 -0.1389 9 6 5.5776 -2.0069 -0.5519 10 6 5.9674 -3.3086 0.1513 11 6 7.4694 -3.4167 0.2117 12 6 8.2784 -3.9027 -0.7489 13 7 9.5425 -3.8194 -0.3080 14 6 9.5468 -3.3077 0.8924 15 7 8.2734 -3.0391 1.2532 16 1 7.9828 -2.6509 2.0932 17 7 2.0197 -0.6925 1.1994 18 6 2.0825 0.2226 2.3468 19 6 2.5875 -0.5218 3.5559 20 8 2.8679 -1.6988 3.4701 21 7 2.7275 0.1202 4.7326 22 6 3.1873 -0.5569 5.8325 23 1 3.4370 -1.6049 5.7561 24 6 3.3312 0.1048 7.0458 25 7 3.0269 1.3798 7.1389 26 14 3.9571 -0.8180 8.5446 27 1 5.3135 -1.3538 8.2651 28 1 4.0200 0.1070 9.7046 29 1 3.0357 -1.9404 8.8552 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5137 0.8900 33 1 1.7515 -0.1582 -2.1370 34 1 1.6054 -1.7198 -1.2952 35 1 4.5424 0.0094 -2.8074 36 1 3.8090 1.1867 -1.6919 37 1 5.2722 0.2954 -1.2093 38 1 5.9813 -1.1598 0.0027 39 1 5.9827 -2.0049 -1.5638 40 1 5.5639 -4.1560 -0.4029 41 1 5.5625 -3.3103 1.1633 42 1 7.9647 -4.2887 -1.7075 43 1 10.4238 -3.1248 1.4956 44 1 2.9174 -1.1205 1.0287 45 1 2.7588 1.0461 2.1182 46 1 1.0871 0.6163 2.5525 47 1 2.5029 1.0613 4.8014 48 1 3.1277 1.8419 7.9858 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283620916.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:10 Heat of formation + Delta-G solvation = -37.852398 kcal Electronic energy + Delta-G solvation = -29724.821940 eV Core-core repulsion = 25621.708076 eV Total energy + Delta-G solvation = -4103.113865 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.96852 -41.29110 -40.11054 -37.94719 -36.18227 -35.77900 -34.92940 -33.32970 -33.23289 -32.20884 -29.97224 -28.37299 -27.99039 -27.06905 -25.82919 -24.76129 -22.44743 -21.77337 -21.43504 -21.16727 -20.13304 -19.89984 -18.92897 -18.06551 -17.82291 -17.43836 -17.04883 -16.52707 -16.49037 -16.15539 -15.87238 -15.61107 -15.55010 -15.03546 -14.84447 -14.46580 -14.39355 -14.24837 -13.90202 -13.81601 -13.59199 -13.49135 -13.38251 -13.32493 -13.06971 -12.93086 -12.89108 -12.59545 -12.46872 -12.39919 -12.19498 -12.13936 -11.95876 -11.53354 -11.02031 -10.96314 -10.81822 -10.36085 -10.04404 -9.64632 -9.33071 -9.25703 -8.49135 -5.98069 1.08185 1.36509 1.39116 1.49863 1.62805 1.99434 2.01828 2.19867 2.26449 2.30508 2.93770 3.17584 3.47055 3.52347 3.85641 3.92158 3.95888 3.99893 4.14544 4.19909 4.28154 4.30476 4.39333 4.44547 4.47687 4.50387 4.54354 4.59074 4.63832 4.70528 4.79945 4.89364 4.94067 4.95475 5.05533 5.07872 5.35016 5.36851 5.38321 5.58168 5.77877 5.90434 6.16549 6.33664 6.49512 6.50979 6.58186 7.09971 7.10183 7.20343 7.52652 8.09289 8.68137 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.007027 B = 0.003892 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3983.620723 B = 7193.102301 C =10535.840226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.064 3.936 3 H 0.058 0.942 4 C 0.114 3.886 5 N -0.623 5.623 6 C 0.069 3.931 7 C 0.496 3.504 8 O -0.559 6.559 9 C -0.121 4.121 10 C -0.024 4.024 11 C -0.023 4.023 12 C -0.037 4.037 13 N -0.532 5.532 14 C 0.187 3.813 15 N -0.565 5.565 16 H 0.429 0.571 17 N -0.682 5.682 18 C 0.064 3.936 19 C 0.435 3.565 20 O -0.619 6.619 21 N -0.571 5.571 22 C -0.335 4.335 23 H 0.076 0.924 24 C -0.010 4.010 25 N -0.919 5.919 26 Si 0.992 3.008 27 H -0.270 1.270 28 H -0.268 1.268 29 H -0.275 1.275 30 H 0.089 0.911 31 H 0.046 0.954 32 H 0.048 0.952 33 H 0.124 0.876 34 H 0.067 0.933 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.097 0.903 39 H 0.126 0.874 40 H 0.091 0.909 41 H 0.052 0.948 42 H 0.181 0.819 43 H 0.241 0.759 44 H 0.345 0.655 45 H 0.060 0.940 46 H 0.099 0.901 47 H 0.396 0.604 48 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.769 3.272 -19.753 20.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.047 4.047 3 H 0.076 0.924 4 C -0.009 4.009 5 N -0.357 5.357 6 C -0.072 4.072 7 C 0.285 3.715 8 O -0.437 6.437 9 C -0.160 4.160 10 C -0.063 4.063 11 C -0.139 4.139 12 C -0.184 4.184 13 N -0.252 5.252 14 C -0.097 4.097 15 N -0.168 5.168 16 H 0.268 0.732 17 N -0.321 5.321 18 C -0.069 4.069 19 C 0.222 3.778 20 O -0.505 6.505 21 N -0.209 5.209 22 C -0.464 4.464 23 H 0.094 0.906 24 C -0.210 4.210 25 N -0.560 5.560 26 Si 0.815 3.185 27 H -0.195 1.195 28 H -0.193 1.193 29 H -0.200 1.200 30 H 0.107 0.893 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.141 0.859 34 H 0.086 0.914 35 H 0.100 0.900 36 H 0.105 0.895 37 H 0.095 0.905 38 H 0.115 0.885 39 H 0.144 0.856 40 H 0.110 0.890 41 H 0.071 0.929 42 H 0.198 0.802 43 H 0.257 0.743 44 H 0.168 0.832 45 H 0.078 0.922 46 H 0.117 0.883 47 H 0.229 0.771 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.718 1.658 -19.738 20.617 hybrid contribution -0.089 0.943 1.874 2.100 sum 5.629 2.601 -17.864 18.910 Atomic orbital electron populations 1.21738 0.93248 1.01915 1.02407 1.22119 0.97006 0.96278 0.89254 0.92413 1.21772 0.79256 1.02051 0.97800 1.48067 1.07296 1.21706 1.58591 1.22111 0.95395 0.90035 0.99697 1.21232 0.91728 0.81535 0.76990 1.90825 1.65781 1.40701 1.46364 1.21636 0.90581 0.99132 1.04694 1.19625 0.86795 0.98445 1.01474 1.21247 0.94037 1.07799 0.90824 1.22364 0.88260 1.06698 1.01112 1.70281 1.23432 1.20449 1.11003 1.25669 0.88198 1.01348 0.94475 1.43470 1.07961 1.48412 1.16980 0.73168 1.60204 1.35949 1.32083 1.03840 1.21587 1.01797 0.93688 0.89797 1.20885 0.83375 0.88038 0.85484 1.90525 1.56312 1.18132 1.85541 1.41905 1.58388 1.12483 1.08089 1.19604 1.42339 0.95862 0.88639 0.90602 1.26009 0.97171 0.96600 1.01192 1.69662 1.48448 1.09670 1.28221 0.85016 0.78757 0.77820 0.76903 1.19467 1.19263 1.20048 0.89263 0.93513 0.93293 0.85853 0.91405 0.89996 0.89468 0.90461 0.88468 0.85603 0.89027 0.92902 0.80180 0.74312 0.83171 0.92244 0.88289 0.77054 0.91223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.91 9.41 71.98 0.68 -2.23 16 2 C 0.06 1.52 2.95 44.91 0.13 1.66 16 3 H 0.06 1.18 7.80 -2.39 -0.02 1.16 16 4 C 0.11 2.27 5.20 86.38 0.45 2.72 16 5 N -0.62 -12.13 2.66 -846.74 -2.25 -14.39 16 6 C 0.07 0.71 10.24 127.77 1.31 2.02 16 7 C 0.50 12.96 6.05 87.66 0.53 13.49 16 8 O -0.56 -20.66 14.15 -3.04 -0.04 -20.70 16 9 C -0.12 -2.38 4.23 29.85 0.13 -2.25 16 10 C -0.02 -0.58 5.06 29.85 0.15 -0.43 16 11 C -0.02 -0.51 6.49 40.95 0.27 -0.25 16 12 C -0.04 -0.85 11.79 83.52 0.98 0.13 16 13 N -0.53 -13.21 11.25 -200.31 -2.25 -15.46 16 14 C 0.19 3.61 13.04 180.26 2.35 5.97 16 15 N -0.56 -11.36 6.15 -186.49 -1.15 -12.51 16 16 H 0.43 7.47 8.96 -92.71 -0.83 6.64 16 17 N -0.68 -24.30 5.82 -495.58 -2.88 -27.18 16 18 C 0.06 2.37 5.96 85.56 0.51 2.88 16 19 C 0.43 21.78 7.82 87.66 0.69 22.46 16 20 O -0.62 -36.44 15.78 -3.09 -0.05 -36.49 16 21 N -0.57 -29.97 5.29 -306.98 -1.62 -31.60 16 22 C -0.33 -19.28 9.68 84.04 0.81 -18.47 16 23 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 24 C -0.01 -0.52 5.50 84.93 0.47 -0.06 16 25 N -0.92 -49.51 13.05 21.66 0.28 -49.23 16 26 Si 0.99 42.94 29.55 68.60 2.03 44.97 16 27 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 28 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 29 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 30 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.05 1.14 7.45 -2.39 -0.02 1.12 16 33 H 0.12 1.41 8.07 -2.38 -0.02 1.39 16 34 H 0.07 1.74 7.42 -2.39 -0.02 1.72 16 35 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.09 0.67 8.07 -2.39 -0.02 0.65 16 37 H 0.08 0.74 6.44 -2.38 -0.02 0.73 16 38 H 0.10 1.79 7.40 -2.39 -0.02 1.77 16 39 H 0.13 1.71 8.11 -2.39 -0.02 1.69 16 40 H 0.09 2.24 8.10 -2.39 -0.02 2.22 16 41 H 0.05 1.64 8.10 -2.38 -0.02 1.62 16 42 H 0.18 3.39 8.06 -2.91 -0.02 3.37 16 43 H 0.24 2.57 8.06 -2.91 -0.02 2.54 16 44 H 0.34 13.31 4.17 -89.69 -0.37 12.93 16 45 H 0.06 1.92 8.05 -2.39 -0.02 1.90 16 46 H 0.10 3.36 7.44 -2.38 -0.02 3.35 16 47 H 0.40 19.64 7.90 -92.71 -0.73 18.91 16 48 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 Total: -1.00 -83.08 397.95 0.58 -82.50 By element: Atomic # 1 Polarization: 53.37 SS G_CDS: -0.93 Total: 52.43 kcal Atomic # 6 Polarization: 18.20 SS G_CDS: 9.45 Total: 27.65 kcal Atomic # 7 Polarization: -140.49 SS G_CDS: -9.88 Total: -150.37 kcal Atomic # 8 Polarization: -57.10 SS G_CDS: -0.09 Total: -57.19 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -83.08 0.58 -82.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283620916.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.651 kcal (2) G-P(sol) polarization free energy of solvation -83.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds