Wall clock time and date at job start Tue Mar 31 2020 19:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47588 * 2 1 4 4 C 1.52998 * 109.47283 * 119.99946 * 2 1 3 5 5 N 1.46502 * 109.47677 * 176.69887 * 4 2 1 6 6 C 1.46493 * 120.00005 * 83.69526 * 5 4 2 7 7 C 1.34777 * 119.99677 * 263.70092 * 5 4 2 8 8 O 1.21278 * 120.00426 * 0.02562 * 7 5 4 9 9 C 1.50703 * 119.99833 * 179.97438 * 7 5 4 10 10 C 1.52993 * 109.47249 * 180.02562 * 9 7 5 11 11 C 1.50703 * 109.47249 * 179.97438 * 10 9 7 12 12 C 1.34667 * 126.59197 * 275.04169 * 11 10 9 13 13 N 1.34130 * 108.01807 * 179.74238 * 12 11 10 14 14 C 1.30494 * 109.25947 * 0.36756 * 13 12 11 15 15 N 1.35042 * 108.69807 * 359.63365 * 14 13 12 16 16 H 0.97003 * 126.39709 * 180.25326 * 15 14 13 17 17 N 1.46906 * 109.47278 * 239.99994 * 2 1 3 18 18 C 1.46897 * 110.99869 * 78.68922 * 17 2 1 19 19 C 1.50697 * 109.46842 * 180.02562 * 18 17 2 20 20 O 1.21301 * 120.00224 * 0.02562 * 19 18 17 21 21 N 1.34777 * 120.00432 * 180.02562 * 19 18 17 22 22 C 1.37094 * 120.00525 * 179.97438 * 21 19 18 23 23 H 1.07999 * 120.00054 * 0.02562 * 22 21 19 24 24 C 1.38953 * 119.99795 * 179.97438 * 22 21 19 25 25 N 1.31403 * 120.00032 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 119.99451 * 180.02562 * 24 22 21 27 27 H 1.48502 * 109.47477 * 60.00386 * 26 24 22 28 28 H 1.48508 * 109.47039 * 179.97438 * 26 24 22 29 29 H 1.48498 * 109.47469 * 299.99757 * 26 24 22 30 30 H 1.08989 * 109.47413 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47007 * 300.00073 * 1 2 3 32 32 H 1.09008 * 109.46836 * 60.00016 * 1 2 3 33 33 H 1.09001 * 109.47131 * 56.69466 * 4 2 1 34 34 H 1.09003 * 109.47274 * 296.69782 * 4 2 1 35 35 H 1.09007 * 109.47526 * 265.10483 * 6 5 4 36 36 H 1.08998 * 109.47265 * 25.10307 * 6 5 4 37 37 H 1.09004 * 109.47391 * 145.10210 * 6 5 4 38 38 H 1.08999 * 109.47037 * 59.99347 * 9 7 5 39 39 H 1.09011 * 109.46969 * 300.00234 * 9 7 5 40 40 H 1.08992 * 109.47386 * 59.99639 * 10 9 7 41 41 H 1.09001 * 109.46859 * 299.99472 * 10 9 7 42 42 H 1.07993 * 125.98683 * 359.92400 * 12 11 10 43 43 H 1.07998 * 125.65121 * 179.89364 * 14 13 12 44 44 H 1.00903 * 111.00011 * 202.64950 * 17 2 1 45 45 H 1.08997 * 109.47540 * 300.00384 * 18 17 2 46 46 H 1.09001 * 109.47131 * 60.00570 * 18 17 2 47 47 H 0.97008 * 119.99550 * 359.97438 * 21 19 18 48 48 H 0.97004 * 119.99963 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5028 -0.7905 1.2102 6 6 4.3026 0.3445 1.6772 7 6 4.1127 -1.8985 0.7445 8 8 3.4506 -2.8380 0.3574 9 6 5.6175 -1.9696 0.7039 10 6 6.0490 -3.3234 0.1365 11 6 7.5538 -3.3943 0.0952 12 6 8.3527 -2.9302 -0.8845 13 7 9.6236 -3.1832 -0.5382 14 6 9.6422 -3.7934 0.6151 15 7 8.3713 -3.9419 1.0468 16 1 8.0902 -4.3586 1.8765 17 7 2.0197 -0.6925 -1.1995 18 6 1.9416 0.1791 -2.3793 19 6 2.4506 -0.5641 -3.5874 20 8 2.8397 -1.7076 -3.4766 21 7 2.4735 0.0417 -4.7911 22 6 2.9371 -0.6342 -5.8901 23 1 3.2836 -1.6523 -5.7914 24 6 2.9602 -0.0097 -7.1311 25 7 2.5382 1.2289 -7.2513 26 14 3.5912 -0.9310 -8.6286 27 1 2.7603 -2.1414 -8.8516 28 1 3.5117 -0.0501 -9.8215 29 1 5.0026 -1.3340 -8.4035 30 1 -0.3633 -1.0275 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8901 33 1 1.6291 -1.7304 1.2794 34 1 1.7258 -0.1744 2.1383 35 1 4.5679 0.9756 0.8289 36 1 3.7242 0.9256 2.3954 37 1 5.2109 -0.0230 2.1548 38 1 6.0141 -1.8549 1.7126 39 1 6.0020 -1.1709 0.0694 40 1 5.6524 -3.4377 -0.8723 41 1 5.6646 -4.1223 0.7707 42 1 8.0273 -2.4379 -1.7889 43 1 10.5275 -4.1211 1.1397 44 1 2.9598 -1.0322 -1.0624 45 1 0.9056 0.4746 -2.5448 46 1 2.5511 1.0678 -2.2155 47 1 2.1620 0.9561 -4.8799 48 1 2.5547 1.6651 -8.1176 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283620918.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:13 Heat of formation + Delta-G solvation = -11.862225 kcal Electronic energy + Delta-G solvation = -29502.569091 eV Core-core repulsion = 25400.582245 eV Total energy + Delta-G solvation = -4101.986846 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.15984 -40.21521 -38.22663 -36.81379 -34.95131 -34.06121 -33.77757 -32.45130 -31.27586 -30.84788 -29.09734 -27.59377 -26.41006 -26.14615 -24.20883 -23.65759 -21.67289 -20.90271 -20.40001 -19.37019 -19.04527 -18.14210 -17.82146 -16.97123 -16.59730 -16.33531 -15.72854 -15.26252 -15.03998 -14.99468 -14.50268 -14.38738 -13.92532 -13.86739 -13.77223 -13.48622 -13.34849 -13.06317 -12.82883 -12.79333 -12.66636 -12.38279 -12.20955 -11.93614 -11.81472 -11.63870 -11.47511 -11.38342 -11.29875 -11.02812 -10.80870 -10.38453 -10.15463 -10.14554 -10.07895 -9.80444 -9.42601 -8.80841 -8.48701 -8.32752 -7.94044 -7.87368 -6.35069 -3.75384 1.86956 2.59738 2.80758 2.98722 3.07990 3.25966 3.30654 3.35901 3.99090 4.15014 4.28573 4.40997 4.58521 4.73934 4.81364 4.82689 4.88200 4.94718 5.10097 5.14029 5.23033 5.30526 5.30935 5.33277 5.35681 5.44447 5.45143 5.52104 5.61265 5.75191 5.79162 5.85162 5.98925 6.05483 6.07073 6.19120 6.24481 6.36374 6.44948 6.64850 7.19715 7.20076 7.37149 7.61743 7.81172 7.93745 8.13521 8.14663 8.69382 9.25329 9.61918 10.14433 10.82869 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.007363 B = 0.003538 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3801.876210 B = 7912.146349 C =11080.427606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.067 3.933 3 H 0.037 0.963 4 C 0.114 3.886 5 N -0.626 5.626 6 C 0.078 3.922 7 C 0.506 3.494 8 O -0.507 6.507 9 C -0.132 4.132 10 C -0.031 4.031 11 C -0.019 4.019 12 C -0.019 4.019 13 N -0.493 5.493 14 C 0.176 3.824 15 N -0.569 5.569 16 H 0.417 0.583 17 N -0.655 5.655 18 C 0.050 3.950 19 C 0.441 3.559 20 O -0.576 6.576 21 N -0.566 5.566 22 C -0.297 4.297 23 H 0.102 0.898 24 C 0.022 3.978 25 N -0.904 5.904 26 Si 0.929 3.071 27 H -0.274 1.274 28 H -0.285 1.285 29 H -0.273 1.273 30 H 0.065 0.935 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.097 0.903 34 H 0.078 0.922 35 H 0.056 0.944 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.087 0.913 39 H 0.099 0.901 40 H 0.104 0.896 41 H 0.077 0.923 42 H 0.172 0.828 43 H 0.206 0.794 44 H 0.350 0.650 45 H 0.085 0.915 46 H 0.037 0.963 47 H 0.391 0.609 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.756 -0.609 23.983 24.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.045 4.045 3 H 0.055 0.945 4 C -0.009 4.009 5 N -0.361 5.361 6 C -0.066 4.066 7 C 0.294 3.706 8 O -0.381 6.381 9 C -0.172 4.172 10 C -0.070 4.070 11 C -0.134 4.134 12 C -0.167 4.167 13 N -0.212 5.212 14 C -0.108 4.108 15 N -0.173 5.173 16 H 0.254 0.746 17 N -0.291 5.291 18 C -0.083 4.083 19 C 0.226 3.774 20 O -0.459 6.459 21 N -0.203 5.203 22 C -0.427 4.427 23 H 0.120 0.880 24 C -0.179 4.179 25 N -0.546 5.546 26 Si 0.757 3.243 27 H -0.199 1.199 28 H -0.210 1.210 29 H -0.199 1.199 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.115 0.885 34 H 0.096 0.904 35 H 0.075 0.925 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.105 0.895 39 H 0.117 0.883 40 H 0.123 0.877 41 H 0.095 0.905 42 H 0.190 0.810 43 H 0.222 0.778 44 H 0.172 0.828 45 H 0.103 0.897 46 H 0.055 0.945 47 H 0.224 0.776 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.787 -1.869 23.032 23.821 hybrid contribution 0.088 0.689 0.191 0.720 sum 5.875 -1.181 23.222 23.983 Atomic orbital electron populations 1.21754 0.94044 1.02779 1.01216 1.21902 0.96306 0.95489 0.90765 0.94531 1.21727 0.78939 1.03282 0.96912 1.47919 1.06942 1.16377 1.64892 1.21802 0.96012 0.88963 0.99780 1.20676 0.90499 0.82211 0.77181 1.90821 1.66491 1.36021 1.44743 1.21678 0.92304 1.00153 1.03054 1.19801 0.86194 0.96218 1.04800 1.21324 0.94138 1.05451 0.92492 1.22262 0.88147 1.05693 1.00593 1.70300 1.22731 1.16184 1.11989 1.24949 0.87414 1.03571 0.94828 1.43310 1.07704 1.46704 1.19614 0.74556 1.60107 1.31257 1.36977 1.00778 1.21725 1.01383 0.93949 0.91268 1.19834 0.85156 0.88134 0.84279 1.90553 1.52075 1.18143 1.85169 1.41855 1.56722 1.15328 1.06395 1.19659 1.38518 0.99125 0.85397 0.87996 1.25236 0.97650 0.95934 0.99119 1.69604 1.47442 1.11694 1.25851 0.85937 0.79469 0.78937 0.80003 1.19907 1.21026 1.19876 0.91576 0.92825 0.92253 0.88510 0.90375 0.92502 0.90841 0.91198 0.89455 0.88316 0.87740 0.90456 0.81044 0.77788 0.82839 0.89708 0.94477 0.77584 0.91918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.34 37.15 0.35 -1.27 16 2 C 0.07 0.85 2.92 -67.71 -0.20 0.66 16 3 H 0.04 0.44 7.91 -51.93 -0.41 0.03 16 4 C 0.11 1.24 5.22 -4.04 -0.02 1.22 16 5 N -0.63 -6.56 2.52 -181.57 -0.46 -7.02 16 6 C 0.08 0.53 10.19 59.84 0.61 1.14 16 7 C 0.51 6.46 6.11 -10.98 -0.07 6.39 16 8 O -0.51 -8.70 14.78 5.56 0.08 -8.62 16 9 C -0.13 -1.28 4.30 -27.89 -0.12 -1.40 16 10 C -0.03 -0.34 5.06 -27.89 -0.14 -0.48 16 11 C -0.02 -0.20 6.49 -81.60 -0.53 -0.73 16 12 C -0.02 -0.25 11.79 -17.81 -0.21 -0.46 16 13 N -0.49 -6.54 11.25 -14.67 -0.17 -6.70 16 14 C 0.18 1.61 13.04 -90.38 -1.18 0.43 16 15 N -0.57 -4.56 6.15 -10.30 -0.06 -4.63 16 16 H 0.42 1.91 8.96 -40.82 -0.37 1.55 16 17 N -0.66 -11.64 5.91 -107.99 -0.64 -12.27 16 18 C 0.05 0.94 5.97 -4.98 -0.03 0.91 16 19 C 0.44 10.93 7.82 -10.99 -0.09 10.85 16 20 O -0.58 -16.46 15.78 5.54 0.09 -16.38 16 21 N -0.57 -14.84 5.29 -10.96 -0.06 -14.90 16 22 C -0.30 -8.54 9.68 -14.93 -0.14 -8.69 16 23 H 0.10 3.07 7.16 -52.49 -0.38 2.70 16 24 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 25 N -0.90 -25.13 13.05 55.50 0.72 -24.41 16 26 Si 0.93 21.66 29.55 -169.99 -5.02 16.64 16 27 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 28 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 29 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 30 H 0.07 0.84 8.14 -51.94 -0.42 0.41 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.73 7.09 -51.92 -0.37 0.36 16 33 H 0.10 1.26 7.24 -51.93 -0.38 0.88 16 34 H 0.08 0.60 7.96 -51.93 -0.41 0.19 16 35 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.37 7.90 -51.93 -0.41 -0.04 16 37 H 0.07 0.36 6.64 -51.93 -0.34 0.02 16 38 H 0.09 0.62 7.41 -51.93 -0.38 0.24 16 39 H 0.10 0.96 8.11 -51.92 -0.42 0.54 16 40 H 0.10 1.44 8.10 -51.93 -0.42 1.02 16 41 H 0.08 0.80 8.10 -51.93 -0.42 0.38 16 42 H 0.17 2.23 8.06 -52.49 -0.42 1.81 16 43 H 0.21 1.01 8.06 -52.49 -0.42 0.59 16 44 H 0.35 6.66 5.18 -39.29 -0.20 6.45 16 45 H 0.08 1.49 7.04 -51.93 -0.37 1.12 16 46 H 0.04 0.64 8.07 -51.93 -0.42 0.22 16 47 H 0.39 9.79 7.90 -40.82 -0.32 9.47 16 48 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 398.66 15.07 6.01 6.01 Total: -1.00 -37.74 398.66 -8.64 -46.38 By element: Atomic # 1 Polarization: 24.10 SS G_CDS: -7.27 Total: 16.83 kcal Atomic # 6 Polarization: 10.93 SS G_CDS: -1.87 Total: 9.06 kcal Atomic # 7 Polarization: -69.27 SS G_CDS: -0.66 Total: -69.93 kcal Atomic # 8 Polarization: -25.16 SS G_CDS: 0.17 Total: -25.00 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -37.74 -8.64 -46.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283620918.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.518 kcal (2) G-P(sol) polarization free energy of solvation -37.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds