Wall clock time and date at job start Tue Mar 31 2020 19:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47588 * 2 1 4 4 C 1.52998 * 109.47283 * 119.99946 * 2 1 3 5 5 N 1.46502 * 109.47677 * 176.69887 * 4 2 1 6 6 C 1.46493 * 120.00005 * 83.69526 * 5 4 2 7 7 C 1.34777 * 119.99677 * 263.70092 * 5 4 2 8 8 O 1.21278 * 120.00426 * 0.02562 * 7 5 4 9 9 C 1.50703 * 119.99833 * 179.97438 * 7 5 4 10 10 C 1.52993 * 109.47249 * 180.02562 * 9 7 5 11 11 C 1.50703 * 109.47249 * 179.97438 * 10 9 7 12 12 C 1.34667 * 126.59197 * 275.04169 * 11 10 9 13 13 N 1.34130 * 108.01807 * 179.74238 * 12 11 10 14 14 C 1.30494 * 109.25947 * 0.36756 * 13 12 11 15 15 N 1.35042 * 108.69807 * 359.63365 * 14 13 12 16 16 H 0.97003 * 126.39709 * 180.25326 * 15 14 13 17 17 N 1.46906 * 109.47278 * 239.99994 * 2 1 3 18 18 C 1.46897 * 110.99869 * 78.68922 * 17 2 1 19 19 C 1.50697 * 109.46842 * 180.02562 * 18 17 2 20 20 O 1.21301 * 120.00224 * 0.02562 * 19 18 17 21 21 N 1.34777 * 120.00432 * 180.02562 * 19 18 17 22 22 C 1.37094 * 120.00525 * 179.97438 * 21 19 18 23 23 H 1.07999 * 120.00054 * 0.02562 * 22 21 19 24 24 C 1.38953 * 119.99795 * 179.97438 * 22 21 19 25 25 N 1.31403 * 120.00032 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 119.99451 * 180.02562 * 24 22 21 27 27 H 1.48502 * 109.47477 * 60.00386 * 26 24 22 28 28 H 1.48508 * 109.47039 * 179.97438 * 26 24 22 29 29 H 1.48498 * 109.47469 * 299.99757 * 26 24 22 30 30 H 1.08989 * 109.47413 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47007 * 300.00073 * 1 2 3 32 32 H 1.09008 * 109.46836 * 60.00016 * 1 2 3 33 33 H 1.09001 * 109.47131 * 56.69466 * 4 2 1 34 34 H 1.09003 * 109.47274 * 296.69782 * 4 2 1 35 35 H 1.09007 * 109.47526 * 265.10483 * 6 5 4 36 36 H 1.08998 * 109.47265 * 25.10307 * 6 5 4 37 37 H 1.09004 * 109.47391 * 145.10210 * 6 5 4 38 38 H 1.08999 * 109.47037 * 59.99347 * 9 7 5 39 39 H 1.09011 * 109.46969 * 300.00234 * 9 7 5 40 40 H 1.08992 * 109.47386 * 59.99639 * 10 9 7 41 41 H 1.09001 * 109.46859 * 299.99472 * 10 9 7 42 42 H 1.07993 * 125.98683 * 359.92400 * 12 11 10 43 43 H 1.07998 * 125.65121 * 179.89364 * 14 13 12 44 44 H 1.00903 * 111.00011 * 202.64950 * 17 2 1 45 45 H 1.08997 * 109.47540 * 300.00384 * 18 17 2 46 46 H 1.09001 * 109.47131 * 60.00570 * 18 17 2 47 47 H 0.97008 * 119.99550 * 359.97438 * 21 19 18 48 48 H 0.97004 * 119.99963 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5028 -0.7905 1.2102 6 6 4.3026 0.3445 1.6772 7 6 4.1127 -1.8985 0.7445 8 8 3.4506 -2.8380 0.3574 9 6 5.6175 -1.9696 0.7039 10 6 6.0490 -3.3234 0.1365 11 6 7.5538 -3.3943 0.0952 12 6 8.3527 -2.9302 -0.8845 13 7 9.6236 -3.1832 -0.5382 14 6 9.6422 -3.7934 0.6151 15 7 8.3713 -3.9419 1.0468 16 1 8.0902 -4.3586 1.8765 17 7 2.0197 -0.6925 -1.1995 18 6 1.9416 0.1791 -2.3793 19 6 2.4506 -0.5641 -3.5874 20 8 2.8397 -1.7076 -3.4766 21 7 2.4735 0.0417 -4.7911 22 6 2.9371 -0.6342 -5.8901 23 1 3.2836 -1.6523 -5.7914 24 6 2.9602 -0.0097 -7.1311 25 7 2.5382 1.2289 -7.2513 26 14 3.5912 -0.9310 -8.6286 27 1 2.7603 -2.1414 -8.8516 28 1 3.5117 -0.0501 -9.8215 29 1 5.0026 -1.3340 -8.4035 30 1 -0.3633 -1.0275 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8901 33 1 1.6291 -1.7304 1.2794 34 1 1.7258 -0.1744 2.1383 35 1 4.5679 0.9756 0.8289 36 1 3.7242 0.9256 2.3954 37 1 5.2109 -0.0230 2.1548 38 1 6.0141 -1.8549 1.7126 39 1 6.0020 -1.1709 0.0694 40 1 5.6524 -3.4377 -0.8723 41 1 5.6646 -4.1223 0.7707 42 1 8.0273 -2.4379 -1.7889 43 1 10.5275 -4.1211 1.1397 44 1 2.9598 -1.0322 -1.0624 45 1 0.9056 0.4746 -2.5448 46 1 2.5511 1.0678 -2.2155 47 1 2.1620 0.9561 -4.8799 48 1 2.5547 1.6651 -8.1176 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283620918.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:12 Heat of formation + Delta-G solvation = -40.534488 kcal Electronic energy + Delta-G solvation = -29503.812414 eV Core-core repulsion = 25400.582245 eV Total energy + Delta-G solvation = -4103.230169 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.97890 -41.18300 -40.11708 -38.00875 -36.15519 -35.75502 -34.94957 -33.32219 -33.25240 -32.17463 -29.96610 -28.37776 -27.99918 -27.07653 -25.84486 -24.74351 -22.46624 -21.78481 -21.42005 -21.13349 -20.12169 -19.89663 -18.92800 -18.05357 -17.80411 -17.36834 -17.03017 -16.61945 -16.47586 -16.13560 -15.85982 -15.58495 -15.57205 -15.07335 -14.83420 -14.48615 -14.40538 -14.24217 -13.87984 -13.75962 -13.63645 -13.49353 -13.39408 -13.34004 -13.05737 -12.91139 -12.85382 -12.62760 -12.45577 -12.37179 -12.20577 -12.12358 -11.94085 -11.51978 -11.00037 -10.94341 -10.80278 -10.35850 -10.02909 -9.65279 -9.35873 -9.27387 -8.47924 -5.96605 1.06073 1.38321 1.39782 1.50982 1.64932 2.01240 2.03532 2.19339 2.28074 2.29944 2.93295 3.18826 3.47081 3.52865 3.85403 3.92671 3.95105 4.00788 4.16124 4.20724 4.28371 4.33971 4.41590 4.42821 4.48447 4.52755 4.55735 4.58184 4.65659 4.69313 4.78824 4.88795 4.93955 4.95651 5.06359 5.09433 5.31140 5.37948 5.39662 5.59670 5.73875 5.91181 6.15727 6.34304 6.46226 6.59191 6.59444 7.11501 7.12437 7.22457 7.54190 8.10934 8.69432 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.007363 B = 0.003538 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3801.876210 B = 7912.146349 C =11080.427606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.065 3.935 3 H 0.056 0.944 4 C 0.116 3.884 5 N -0.621 5.621 6 C 0.071 3.929 7 C 0.499 3.501 8 O -0.563 6.563 9 C -0.121 4.121 10 C -0.023 4.023 11 C -0.011 4.011 12 C -0.053 4.053 13 N -0.540 5.540 14 C 0.194 3.806 15 N -0.553 5.553 16 H 0.437 0.563 17 N -0.678 5.678 18 C 0.065 3.935 19 C 0.435 3.565 20 O -0.621 6.621 21 N -0.572 5.572 22 C -0.335 4.335 23 H 0.075 0.925 24 C -0.010 4.010 25 N -0.919 5.919 26 Si 0.991 3.009 27 H -0.273 1.273 28 H -0.267 1.267 29 H -0.272 1.272 30 H 0.047 0.953 31 H 0.090 0.910 32 H 0.050 0.950 33 H 0.069 0.931 34 H 0.121 0.879 35 H 0.052 0.948 36 H 0.100 0.900 37 H 0.090 0.910 38 H 0.124 0.876 39 H 0.098 0.902 40 H 0.064 0.936 41 H 0.083 0.917 42 H 0.154 0.846 43 H 0.250 0.750 44 H 0.339 0.661 45 H 0.102 0.898 46 H 0.061 0.939 47 H 0.396 0.604 48 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.316 0.789 26.429 27.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.046 4.046 3 H 0.074 0.926 4 C -0.007 4.007 5 N -0.355 5.355 6 C -0.071 4.071 7 C 0.288 3.712 8 O -0.441 6.441 9 C -0.161 4.161 10 C -0.062 4.062 11 C -0.128 4.128 12 C -0.200 4.200 13 N -0.260 5.260 14 C -0.090 4.090 15 N -0.158 5.158 16 H 0.278 0.722 17 N -0.314 5.314 18 C -0.067 4.067 19 C 0.222 3.778 20 O -0.507 6.507 21 N -0.209 5.209 22 C -0.465 4.465 23 H 0.093 0.907 24 C -0.210 4.210 25 N -0.560 5.560 26 Si 0.814 3.186 27 H -0.199 1.199 28 H -0.191 1.191 29 H -0.197 1.197 30 H 0.066 0.934 31 H 0.108 0.892 32 H 0.069 0.931 33 H 0.088 0.912 34 H 0.139 0.861 35 H 0.070 0.930 36 H 0.119 0.881 37 H 0.108 0.892 38 H 0.142 0.858 39 H 0.116 0.884 40 H 0.083 0.917 41 H 0.102 0.898 42 H 0.172 0.828 43 H 0.266 0.734 44 H 0.160 0.840 45 H 0.120 0.880 46 H 0.079 0.921 47 H 0.230 0.770 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.321 -0.403 25.526 26.300 hybrid contribution -0.087 0.266 -0.500 0.573 sum 6.234 -0.136 25.026 25.791 Atomic orbital electron populations 1.21752 0.93104 1.02026 1.02576 1.22102 0.96993 0.96104 0.89374 0.92628 1.21756 0.79179 1.02185 0.97581 1.48023 1.07183 1.16609 1.63701 1.22085 0.96874 0.87869 1.00284 1.21181 0.91482 0.82158 0.76370 1.90796 1.67728 1.38249 1.47333 1.21632 0.90458 0.99090 1.04923 1.19607 0.86335 0.97535 1.02747 1.21059 0.93781 1.05235 0.92707 1.22196 0.89140 1.07519 1.01177 1.70246 1.22825 1.18525 1.14402 1.25765 0.88717 1.01008 0.93496 1.43205 1.06992 1.45876 1.19753 0.72222 1.60125 1.30865 1.38098 1.02293 1.21570 1.02224 0.93804 0.89138 1.20920 0.83642 0.87860 0.85382 1.90525 1.53717 1.20402 1.86027 1.41903 1.56982 1.15451 1.06577 1.19611 1.40885 0.98792 0.87208 0.90651 1.26008 0.97101 0.96752 1.01163 1.69658 1.47057 1.12379 1.26920 0.85025 0.78708 0.77941 0.76883 1.19856 1.19089 1.19740 0.93402 0.89171 0.93140 0.91226 0.86067 0.92955 0.88139 0.89182 0.85780 0.88380 0.91718 0.89818 0.82848 0.73449 0.83992 0.88010 0.92112 0.77006 0.91214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 9.34 71.98 0.67 -2.23 16 2 C 0.06 1.54 2.92 44.91 0.13 1.67 16 3 H 0.06 1.15 7.91 -2.39 -0.02 1.13 16 4 C 0.12 2.30 5.22 86.38 0.45 2.75 16 5 N -0.62 -12.01 2.52 -846.76 -2.14 -14.15 16 6 C 0.07 0.74 10.19 127.77 1.30 2.04 16 7 C 0.50 12.80 6.11 87.66 0.54 13.33 16 8 O -0.56 -20.40 14.78 -3.02 -0.04 -20.44 16 9 C -0.12 -2.31 4.30 29.85 0.13 -2.19 16 10 C -0.02 -0.53 5.06 29.85 0.15 -0.38 16 11 C -0.01 -0.24 6.49 40.95 0.27 0.02 16 12 C -0.05 -1.48 11.79 83.52 0.98 -0.49 16 13 N -0.54 -14.33 11.25 -200.32 -2.25 -16.58 16 14 C 0.19 3.16 13.04 180.26 2.35 5.51 16 15 N -0.55 -7.83 6.15 -186.50 -1.15 -8.98 16 16 H 0.44 2.76 8.96 -92.71 -0.83 1.93 16 17 N -0.68 -24.25 5.91 -495.59 -2.93 -27.18 16 18 C 0.07 2.45 5.97 85.56 0.51 2.96 16 19 C 0.43 22.33 7.82 87.66 0.69 23.01 16 20 O -0.62 -37.46 15.78 -3.10 -0.05 -37.51 16 21 N -0.57 -30.92 5.29 -306.98 -1.62 -32.55 16 22 C -0.34 -19.97 9.68 84.04 0.81 -19.15 16 23 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 24 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 25 N -0.92 -50.92 13.05 21.66 0.28 -50.64 16 26 Si 0.99 44.66 29.55 68.60 2.03 46.69 16 27 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 28 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 29 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 30 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 32 H 0.05 1.15 7.09 -2.38 -0.02 1.14 16 33 H 0.07 1.81 7.24 -2.39 -0.02 1.79 16 34 H 0.12 1.37 7.96 -2.39 -0.02 1.35 16 35 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 36 H 0.10 0.54 7.90 -2.39 -0.02 0.53 16 37 H 0.09 0.59 6.64 -2.38 -0.02 0.58 16 38 H 0.12 1.43 7.41 -2.39 -0.02 1.41 16 39 H 0.10 1.92 8.11 -2.38 -0.02 1.90 16 40 H 0.06 2.01 8.10 -2.39 -0.02 1.99 16 41 H 0.08 1.78 8.10 -2.39 -0.02 1.76 16 42 H 0.15 4.55 8.06 -2.91 -0.02 4.52 16 43 H 0.25 1.50 8.06 -2.91 -0.02 1.48 16 44 H 0.34 13.31 5.18 -89.69 -0.46 12.85 16 45 H 0.10 3.49 7.04 -2.39 -0.02 3.47 16 46 H 0.06 2.00 8.07 -2.39 -0.02 1.98 16 47 H 0.40 20.20 7.90 -92.70 -0.73 19.47 16 48 H 0.28 14.41 8.31 -92.71 -0.77 13.64 16 Total: -1.00 -87.90 398.66 0.56 -87.34 By element: Atomic # 1 Polarization: 48.26 SS G_CDS: -1.02 Total: 47.24 kcal Atomic # 6 Polarization: 17.31 SS G_CDS: 9.45 Total: 26.75 kcal Atomic # 7 Polarization: -140.27 SS G_CDS: -9.80 Total: -150.08 kcal Atomic # 8 Polarization: -57.86 SS G_CDS: -0.09 Total: -57.95 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -87.90 0.56 -87.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283620918.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.808 kcal (2) G-P(sol) polarization free energy of solvation -87.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds