Wall clock time and date at job start Tue Mar 31 2020 20:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46492 * 109.46894 * 2 1 4 4 N 1.40088 * 126.04074 * 90.02393 * 3 2 1 5 5 C 1.30831 * 108.20800 * 179.97438 * 4 3 2 6 6 C 1.50700 * 125.89776 * 180.02562 * 5 4 3 7 7 C 1.39871 * 108.20603 * 0.02562 * 5 4 3 8 8 C 1.50692 * 126.04007 * 179.97438 * 7 5 4 9 9 N 1.46499 * 109.47413 * 96.08106 * 8 7 5 10 10 C 1.46506 * 119.99532 * 275.62333 * 9 8 7 11 11 C 1.34776 * 120.00282 * 95.89971 * 9 8 7 12 12 O 1.21581 * 120.00186 * 359.72242 * 11 9 8 13 13 N 1.34777 * 119.99873 * 179.72716 * 11 9 8 14 14 C 1.46501 * 120.00000 * 179.97438 * 13 11 9 15 15 C 1.50698 * 109.47148 * 180.02562 * 14 13 11 16 16 O 1.21294 * 120.00193 * 359.97438 * 15 14 13 17 17 N 1.34773 * 120.00050 * 180.02562 * 15 14 13 18 18 C 1.37093 * 120.00201 * 180.02562 * 17 15 14 19 19 H 1.08003 * 119.99981 * 359.97438 * 18 17 15 20 20 C 1.38953 * 120.00240 * 180.02562 * 18 17 15 21 21 N 1.31408 * 119.99624 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00058 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47078 * 59.99756 * 22 20 18 24 24 H 1.48503 * 109.46902 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47102 * 299.99522 * 22 20 18 26 26 C 1.34951 * 126.03913 * 270.30676 * 3 2 1 27 27 C 1.50702 * 126.12665 * 0.02562 * 26 3 2 28 28 H 1.08995 * 109.47319 * 300.00021 * 1 2 3 29 29 H 1.09005 * 109.46892 * 60.00096 * 1 2 3 30 30 H 1.09001 * 109.47420 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.46795 * 239.99979 * 2 1 3 32 32 H 1.09000 * 109.46438 * 120.00033 * 2 1 3 33 33 H 1.09000 * 109.47789 * 265.23585 * 6 5 4 34 34 H 1.09000 * 109.47419 * 25.23242 * 6 5 4 35 35 H 1.09003 * 109.47541 * 145.23115 * 6 5 4 36 36 H 1.09002 * 109.47640 * 336.07508 * 8 7 5 37 37 H 1.09002 * 109.46950 * 216.07737 * 8 7 5 38 38 H 1.08992 * 109.47368 * 265.07980 * 10 9 8 39 39 H 1.09006 * 109.46821 * 25.08111 * 10 9 8 40 40 H 1.08999 * 109.46731 * 145.07876 * 10 9 8 41 41 H 0.97004 * 119.99843 * 359.97438 * 13 11 9 42 42 H 1.08997 * 109.47006 * 300.00022 * 14 13 11 43 43 H 1.09000 * 109.46784 * 59.99854 * 14 13 11 44 44 H 0.97005 * 120.00125 * 359.97438 * 17 15 14 45 45 H 0.97005 * 120.00124 * 180.02562 * 21 20 18 46 46 H 1.09001 * 109.46981 * 270.17993 * 27 26 3 47 47 H 1.09001 * 109.46964 * 30.17868 * 27 26 3 48 48 H 1.08997 * 109.47192 * 150.17963 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2934 2.1581 1.1327 5 6 2.7089 3.3322 0.7321 6 6 3.1149 4.4774 1.6236 7 6 2.7112 3.3411 -0.6666 8 6 3.1188 4.4955 -1.5452 9 7 4.5173 4.3314 -1.9497 10 6 5.5935 4.7889 -1.0671 11 6 4.8137 3.7647 -3.1360 12 8 3.9206 3.3850 -3.8684 13 7 6.1002 3.6188 -3.5104 14 6 6.4224 3.0023 -4.7998 15 6 7.9185 2.9579 -4.9754 16 8 8.6442 3.3984 -4.1091 17 7 8.4501 2.4297 -6.0956 18 6 9.8111 2.3889 -6.2552 19 1 10.4573 2.7803 -5.4834 20 6 10.3592 1.8448 -7.4103 21 7 9.5729 1.3690 -8.3496 22 14 12.2136 1.7898 -7.6280 23 1 12.8170 0.9888 -6.5329 24 1 12.5402 1.1654 -8.9353 25 1 12.7577 3.1709 -7.5889 26 6 2.2774 2.1317 -1.0912 27 6 2.1158 1.6993 -2.5258 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8932 -0.5139 0.8900 33 1 2.2643 5.1430 1.7704 34 1 3.4426 4.0888 2.5878 35 1 3.9316 5.0288 1.1576 36 1 3.0072 5.4290 -0.9937 37 1 2.4847 4.5191 -2.4315 38 1 5.8980 5.7945 -1.3565 39 1 5.2385 4.7992 -0.0365 40 1 6.4445 4.1131 -1.1515 41 1 6.8127 3.9220 -2.9262 42 1 6.0235 1.9883 -4.8274 43 1 5.9790 3.5893 -5.6040 44 1 7.8697 2.0778 -6.7886 45 1 9.9554 0.9888 -9.1558 46 1 3.0446 1.2493 -2.8764 47 1 1.3091 0.9696 -2.5967 48 1 1.8768 2.5661 -3.1418 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001312661064.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:12 Heat of formation + Delta-G solvation = 8.718646 kcal Electronic energy + Delta-G solvation = -29539.533004 eV Core-core repulsion = 25438.438611 eV Total energy + Delta-G solvation = -4101.094393 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.53273 -39.85139 -38.20694 -35.83992 -34.80442 -34.45079 -33.70151 -32.50112 -31.39169 -31.16507 -28.93414 -27.67528 -27.24844 -26.57942 -25.14277 -24.09871 -22.95216 -20.21393 -19.64004 -19.49148 -19.28307 -18.22936 -17.70380 -16.68732 -16.28106 -15.77744 -15.54186 -15.32565 -14.85777 -14.66532 -14.33791 -14.28392 -14.10786 -13.76886 -13.61420 -13.47206 -13.34427 -13.21953 -13.07829 -12.84021 -12.71585 -12.38313 -12.15917 -12.09630 -11.98443 -11.86166 -11.73347 -11.62093 -11.58194 -11.55472 -11.09721 -10.52840 -10.50275 -10.30457 -9.88188 -9.61535 -9.10746 -8.83514 -8.60599 -8.49224 -8.27518 -8.08666 -6.50407 -3.92297 1.78854 2.35653 2.45101 3.12111 3.14306 3.21890 3.26322 3.47625 3.77282 4.07864 4.24054 4.29275 4.59567 4.67299 4.69978 4.88340 4.91929 4.93117 5.07325 5.08340 5.18373 5.23775 5.29714 5.32551 5.40331 5.42557 5.53014 5.59197 5.63123 5.69541 5.76080 5.84618 5.88467 5.99162 6.03773 6.08300 6.10902 6.23971 6.55490 6.66666 6.83649 6.99527 7.15350 7.46731 7.69407 7.93610 8.24848 8.46858 8.87291 9.05872 9.41021 9.89194 10.66504 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.017422 B = 0.002318 C = 0.002186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.782685 B =12076.046139 C =12802.898936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.129 3.871 3 N -0.373 5.373 4 N -0.304 5.304 5 C 0.084 3.916 6 C -0.075 4.075 7 C -0.264 4.264 8 C 0.214 3.786 9 N -0.628 5.628 10 C 0.077 3.923 11 C 0.706 3.294 12 O -0.596 6.596 13 N -0.726 5.726 14 C 0.129 3.871 15 C 0.429 3.571 16 O -0.598 6.598 17 N -0.550 5.550 18 C -0.305 4.305 19 H 0.104 0.896 20 C 0.026 3.974 21 N -0.896 5.896 22 Si 0.933 3.067 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.272 1.272 26 C 0.118 3.882 27 C -0.088 4.088 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.091 0.909 38 H 0.056 0.944 39 H 0.073 0.927 40 H 0.066 0.934 41 H 0.406 0.594 42 H 0.079 0.921 43 H 0.081 0.919 44 H 0.396 0.604 45 H 0.274 0.726 46 H 0.082 0.918 47 H 0.058 0.942 48 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.525 2.129 15.298 23.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.007 3.993 3 N -0.155 5.155 4 N -0.126 5.126 5 C -0.083 4.083 6 C -0.133 4.133 7 C -0.276 4.276 8 C 0.090 3.910 9 N -0.365 5.365 10 C -0.066 4.066 11 C 0.408 3.592 12 O -0.475 6.475 13 N -0.384 5.384 14 C 0.001 3.999 15 C 0.214 3.786 16 O -0.485 6.485 17 N -0.185 5.185 18 C -0.434 4.434 19 H 0.122 0.878 20 C -0.177 4.177 21 N -0.536 5.536 22 Si 0.760 3.240 23 H -0.198 1.198 24 H -0.209 1.209 25 H -0.198 1.198 26 C -0.010 4.010 27 C -0.146 4.146 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.094 0.906 31 H 0.110 0.890 32 H 0.111 0.889 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.109 0.891 38 H 0.074 0.926 39 H 0.092 0.908 40 H 0.085 0.915 41 H 0.245 0.755 42 H 0.097 0.903 43 H 0.099 0.901 44 H 0.230 0.770 45 H 0.084 0.916 46 H 0.101 0.899 47 H 0.077 0.923 48 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -17.916 1.143 16.124 24.130 hybrid contribution 1.162 0.114 -0.927 1.491 sum -16.754 1.257 15.196 22.654 Atomic orbital electron populations 1.22184 0.94386 1.02969 1.03159 1.21620 0.95117 0.78193 1.04331 1.48510 1.51938 1.11705 1.03353 1.77250 1.23615 1.03777 1.07926 1.22151 0.98539 0.94179 0.93433 1.20246 1.01659 0.93528 0.97910 1.20050 1.16280 0.97891 0.93376 1.19393 0.80849 0.93701 0.97086 1.47043 1.06814 1.64634 1.18048 1.21773 0.90510 0.99666 0.94701 1.15805 0.83158 0.78767 0.81504 1.90833 1.46162 1.56580 1.53923 1.44945 1.06273 1.65464 1.21746 1.20749 0.94898 0.98884 0.85403 1.19801 0.88841 0.85278 0.84638 1.90488 1.61574 1.53145 1.43273 1.41781 1.08068 1.51992 1.16625 1.19672 0.81775 1.37981 1.03991 0.87777 1.25315 1.00705 0.96449 0.95247 1.69606 1.35956 1.39623 1.08387 0.85878 0.81856 0.78767 0.77502 1.19814 1.20868 1.19776 1.21075 0.97594 0.91486 0.90875 1.20552 1.02443 1.03183 0.88415 0.91729 0.91958 0.90566 0.88984 0.88886 0.90536 0.91017 0.90432 0.90366 0.89074 0.92586 0.90809 0.91491 0.75490 0.90271 0.90057 0.77039 0.91565 0.89933 0.92291 0.88259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.18 10.24 37.16 0.38 -0.80 16 2 C 0.13 1.11 6.78 -4.04 -0.03 1.08 16 3 N -0.37 -4.52 3.61 -57.15 -0.21 -4.73 16 4 N -0.30 -4.07 12.58 33.67 0.42 -3.64 16 5 C 0.08 1.00 7.22 -82.41 -0.59 0.40 16 6 C -0.07 -0.61 9.99 36.01 0.36 -0.25 16 7 C -0.26 -3.23 5.67 -105.06 -0.60 -3.83 16 8 C 0.21 2.41 5.47 -5.20 -0.03 2.39 16 9 N -0.63 -8.06 2.86 -188.74 -0.54 -8.60 16 10 C 0.08 0.81 10.08 59.85 0.60 1.41 16 11 C 0.71 11.35 8.28 -86.92 -0.72 10.63 16 12 O -0.60 -10.48 12.85 5.29 0.07 -10.41 16 13 N -0.73 -12.42 5.39 -66.42 -0.36 -12.78 16 14 C 0.13 2.40 6.15 -5.19 -0.03 2.37 16 15 C 0.43 9.85 7.85 -10.99 -0.09 9.77 16 16 O -0.60 -15.34 15.24 5.54 0.08 -15.26 16 17 N -0.55 -13.63 5.29 -10.96 -0.06 -13.69 16 18 C -0.30 -8.28 9.68 -14.93 -0.14 -8.42 16 19 H 0.10 2.94 7.16 -52.48 -0.38 2.57 16 20 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 21 N -0.90 -23.88 13.05 55.50 0.72 -23.16 16 22 Si 0.93 20.54 29.55 -169.99 -5.02 15.52 16 23 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 24 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 25 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 26 C 0.12 1.48 6.93 -82.26 -0.57 0.91 16 27 C -0.09 -1.02 8.40 36.01 0.30 -0.72 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.09 0.68 7.68 -51.93 -0.40 0.28 16 32 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.08 0.53 5.69 -51.93 -0.30 0.23 16 36 H 0.08 0.69 7.72 -51.93 -0.40 0.29 16 37 H 0.09 1.11 6.45 -51.93 -0.33 0.78 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.63 5.72 -51.93 -0.30 0.33 16 40 H 0.07 0.77 6.65 -51.93 -0.35 0.43 16 41 H 0.41 6.96 5.28 -40.82 -0.22 6.74 16 42 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 43 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 44 H 0.40 9.43 7.90 -40.82 -0.32 9.10 16 45 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 46 H 0.08 1.11 7.74 -51.93 -0.40 0.71 16 47 H 0.06 0.55 7.74 -51.93 -0.40 0.14 16 48 H 0.10 1.25 6.14 -51.93 -0.32 0.93 16 LS Contribution 393.41 15.07 5.93 5.93 Total: -1.00 -33.00 393.41 -7.25 -40.25 By element: Atomic # 1 Polarization: 22.11 SS G_CDS: -7.05 Total: 15.06 kcal Atomic # 6 Polarization: 16.75 SS G_CDS: -1.25 Total: 15.50 kcal Atomic # 7 Polarization: -66.58 SS G_CDS: -0.01 Total: -66.59 kcal Atomic # 8 Polarization: -25.83 SS G_CDS: 0.15 Total: -25.67 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.00 -7.25 -40.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001312661064.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.972 kcal (2) G-P(sol) polarization free energy of solvation -32.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds