Wall clock time and date at job start Tue Mar 31 2020 20:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46492 * 109.46894 * 2 1 4 4 N 1.40088 * 126.04074 * 90.02393 * 3 2 1 5 5 C 1.30831 * 108.20800 * 179.97438 * 4 3 2 6 6 C 1.50700 * 125.89776 * 180.02562 * 5 4 3 7 7 C 1.39871 * 108.20603 * 0.02562 * 5 4 3 8 8 C 1.50692 * 126.04007 * 179.97438 * 7 5 4 9 9 N 1.46499 * 109.47413 * 96.08106 * 8 7 5 10 10 C 1.46506 * 119.99532 * 275.62333 * 9 8 7 11 11 C 1.34776 * 120.00282 * 95.89971 * 9 8 7 12 12 O 1.21581 * 120.00186 * 359.72242 * 11 9 8 13 13 N 1.34777 * 119.99873 * 179.72716 * 11 9 8 14 14 C 1.46501 * 120.00000 * 179.97438 * 13 11 9 15 15 C 1.50698 * 109.47148 * 180.02562 * 14 13 11 16 16 O 1.21294 * 120.00193 * 359.97438 * 15 14 13 17 17 N 1.34773 * 120.00050 * 180.02562 * 15 14 13 18 18 C 1.37093 * 120.00201 * 180.02562 * 17 15 14 19 19 H 1.08003 * 119.99981 * 359.97438 * 18 17 15 20 20 C 1.38953 * 120.00240 * 180.02562 * 18 17 15 21 21 N 1.31408 * 119.99624 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00058 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47078 * 59.99756 * 22 20 18 24 24 H 1.48503 * 109.46902 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47102 * 299.99522 * 22 20 18 26 26 C 1.34951 * 126.03913 * 270.30676 * 3 2 1 27 27 C 1.50702 * 126.12665 * 0.02562 * 26 3 2 28 28 H 1.08995 * 109.47319 * 300.00021 * 1 2 3 29 29 H 1.09005 * 109.46892 * 60.00096 * 1 2 3 30 30 H 1.09001 * 109.47420 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.46795 * 239.99979 * 2 1 3 32 32 H 1.09000 * 109.46438 * 120.00033 * 2 1 3 33 33 H 1.09000 * 109.47789 * 265.23585 * 6 5 4 34 34 H 1.09000 * 109.47419 * 25.23242 * 6 5 4 35 35 H 1.09003 * 109.47541 * 145.23115 * 6 5 4 36 36 H 1.09002 * 109.47640 * 336.07508 * 8 7 5 37 37 H 1.09002 * 109.46950 * 216.07737 * 8 7 5 38 38 H 1.08992 * 109.47368 * 265.07980 * 10 9 8 39 39 H 1.09006 * 109.46821 * 25.08111 * 10 9 8 40 40 H 1.08999 * 109.46731 * 145.07876 * 10 9 8 41 41 H 0.97004 * 119.99843 * 359.97438 * 13 11 9 42 42 H 1.08997 * 109.47006 * 300.00022 * 14 13 11 43 43 H 1.09000 * 109.46784 * 59.99854 * 14 13 11 44 44 H 0.97005 * 120.00125 * 359.97438 * 17 15 14 45 45 H 0.97005 * 120.00124 * 180.02562 * 21 20 18 46 46 H 1.09001 * 109.46981 * 270.17993 * 27 26 3 47 47 H 1.09001 * 109.46964 * 30.17868 * 27 26 3 48 48 H 1.08997 * 109.47192 * 150.17963 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2934 2.1581 1.1327 5 6 2.7089 3.3322 0.7321 6 6 3.1149 4.4774 1.6236 7 6 2.7112 3.3411 -0.6666 8 6 3.1188 4.4955 -1.5452 9 7 4.5173 4.3314 -1.9497 10 6 5.5935 4.7889 -1.0671 11 6 4.8137 3.7647 -3.1360 12 8 3.9206 3.3850 -3.8684 13 7 6.1002 3.6188 -3.5104 14 6 6.4224 3.0023 -4.7998 15 6 7.9185 2.9579 -4.9754 16 8 8.6442 3.3984 -4.1091 17 7 8.4501 2.4297 -6.0956 18 6 9.8111 2.3889 -6.2552 19 1 10.4573 2.7803 -5.4834 20 6 10.3592 1.8448 -7.4103 21 7 9.5729 1.3690 -8.3496 22 14 12.2136 1.7898 -7.6280 23 1 12.8170 0.9888 -6.5329 24 1 12.5402 1.1654 -8.9353 25 1 12.7577 3.1709 -7.5889 26 6 2.2774 2.1317 -1.0912 27 6 2.1158 1.6993 -2.5258 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8932 -0.5139 0.8900 33 1 2.2643 5.1430 1.7704 34 1 3.4426 4.0888 2.5878 35 1 3.9316 5.0288 1.1576 36 1 3.0072 5.4290 -0.9937 37 1 2.4847 4.5191 -2.4315 38 1 5.8980 5.7945 -1.3565 39 1 5.2385 4.7992 -0.0365 40 1 6.4445 4.1131 -1.1515 41 1 6.8127 3.9220 -2.9262 42 1 6.0235 1.9883 -4.8274 43 1 5.9790 3.5893 -5.6040 44 1 7.8697 2.0778 -6.7886 45 1 9.9554 0.9888 -9.1558 46 1 3.0446 1.2493 -2.8764 47 1 1.3091 0.9696 -2.5967 48 1 1.8768 2.5661 -3.1418 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001312661064.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:11 Heat of formation + Delta-G solvation = -13.674328 kcal Electronic energy + Delta-G solvation = -29540.504036 eV Core-core repulsion = 25438.438611 eV Total energy + Delta-G solvation = -4102.065425 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.42514 -41.13950 -39.99450 -36.86426 -36.21152 -35.66351 -35.27587 -33.45409 -33.30764 -31.97865 -29.90424 -29.00747 -28.11786 -27.52822 -26.63630 -25.47521 -23.70072 -21.46036 -21.20299 -20.54104 -20.26039 -20.04439 -19.07003 -17.64815 -17.42473 -17.25458 -16.94198 -16.51695 -16.34358 -15.90034 -15.87585 -15.42882 -15.19959 -15.07756 -14.66839 -14.40082 -14.33084 -14.15148 -13.92237 -13.86065 -13.80434 -13.52750 -13.49598 -13.33039 -13.06304 -12.91500 -12.88351 -12.71258 -12.55537 -12.46465 -12.45330 -12.21796 -12.13211 -11.55195 -11.42393 -11.14061 -10.53283 -10.16677 -10.07010 -9.98027 -9.54436 -9.24046 -8.49813 -5.99838 0.86825 1.38790 1.42173 1.46186 1.54390 1.58548 1.92144 2.01354 2.24819 2.30505 3.00184 3.17547 3.24206 3.52140 3.73550 3.99190 4.05276 4.13935 4.19496 4.25598 4.26446 4.30262 4.43375 4.46607 4.50695 4.55947 4.65553 4.69576 4.73701 4.75369 4.80962 4.87041 4.91282 5.07677 5.10938 5.16093 5.19358 5.35155 5.37845 5.44625 5.60237 5.82745 5.93846 5.99731 6.15122 6.49900 6.80530 7.00328 7.04886 7.44818 7.62721 7.96663 8.66929 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.017422 B = 0.002318 C = 0.002186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.782685 B =12076.046139 C =12802.898936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.119 3.881 3 N -0.377 5.377 4 N -0.334 5.334 5 C 0.080 3.920 6 C -0.074 4.074 7 C -0.274 4.274 8 C 0.215 3.785 9 N -0.622 5.622 10 C 0.073 3.927 11 C 0.702 3.298 12 O -0.614 6.614 13 N -0.730 5.730 14 C 0.144 3.856 15 C 0.433 3.567 16 O -0.625 6.625 17 N -0.560 5.560 18 C -0.337 4.337 19 H 0.086 0.914 20 C -0.011 4.011 21 N -0.916 5.916 22 Si 0.996 3.004 23 H -0.271 1.271 24 H -0.272 1.272 25 H -0.269 1.269 26 C 0.102 3.898 27 C -0.076 4.076 28 H 0.051 0.949 29 H 0.057 0.943 30 H 0.100 0.900 31 H 0.103 0.897 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.072 0.928 35 H 0.093 0.907 36 H 0.109 0.891 37 H 0.080 0.920 38 H 0.071 0.929 39 H 0.097 0.903 40 H 0.053 0.947 41 H 0.406 0.594 42 H 0.089 0.911 43 H 0.092 0.908 44 H 0.399 0.601 45 H 0.280 0.720 46 H 0.062 0.938 47 H 0.080 0.920 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.876 2.522 15.982 24.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.002 4.002 3 N -0.159 5.159 4 N -0.156 5.156 5 C -0.087 4.087 6 C -0.132 4.132 7 C -0.287 4.287 8 C 0.092 3.908 9 N -0.358 5.358 10 C -0.069 4.069 11 C 0.403 3.597 12 O -0.495 6.495 13 N -0.389 5.389 14 C 0.016 3.984 15 C 0.220 3.780 16 O -0.513 6.513 17 N -0.195 5.195 18 C -0.466 4.466 19 H 0.103 0.897 20 C -0.211 4.211 21 N -0.556 5.556 22 Si 0.819 3.181 23 H -0.196 1.196 24 H -0.196 1.196 25 H -0.195 1.195 26 C -0.027 4.027 27 C -0.134 4.134 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.119 0.881 31 H 0.121 0.879 32 H 0.115 0.885 33 H 0.112 0.888 34 H 0.091 0.909 35 H 0.111 0.889 36 H 0.127 0.873 37 H 0.098 0.902 38 H 0.089 0.911 39 H 0.115 0.885 40 H 0.072 0.928 41 H 0.245 0.755 42 H 0.107 0.893 43 H 0.110 0.890 44 H 0.233 0.767 45 H 0.089 0.911 46 H 0.080 0.920 47 H 0.098 0.902 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -18.301 1.540 16.837 24.916 hybrid contribution 1.195 -0.012 -1.068 1.603 sum -17.106 1.528 15.768 23.315 Atomic orbital electron populations 1.22115 0.93055 1.04290 1.02267 1.21916 0.96226 0.76952 1.05073 1.48794 1.51700 1.12526 1.02897 1.77204 1.24775 1.04713 1.08919 1.22707 0.97603 0.94584 0.93764 1.20385 1.02828 0.92631 0.97374 1.20240 1.16507 0.98104 0.93815 1.19529 0.79627 0.94795 0.96859 1.47134 1.08073 1.63486 1.17108 1.21941 0.89493 0.99948 0.95527 1.15942 0.82391 0.78952 0.82416 1.90822 1.46392 1.57414 1.54850 1.44912 1.06864 1.65874 1.21219 1.20535 0.91318 0.99865 0.86716 1.20483 0.90574 0.83463 0.83465 1.90463 1.62989 1.53866 1.44005 1.41827 1.07572 1.52743 1.17366 1.19688 0.82804 1.39697 1.04437 0.89650 1.26114 1.05001 0.95498 0.94503 1.69673 1.37625 1.39645 1.08688 0.84943 0.76525 0.78825 0.77795 1.19567 1.19620 1.19454 1.21313 0.98012 0.92131 0.91267 1.20398 1.02090 1.03078 0.87849 0.92986 0.92347 0.88124 0.87877 0.88522 0.88820 0.90874 0.88886 0.87273 0.90199 0.91068 0.88481 0.92819 0.75497 0.89349 0.88980 0.76697 0.91078 0.91956 0.90171 0.89323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.04 10.24 71.98 0.74 -1.30 16 2 C 0.12 1.95 6.78 86.38 0.59 2.53 16 3 N -0.38 -8.92 3.61 -334.71 -1.21 -10.13 16 4 N -0.33 -8.69 12.58 -47.39 -0.60 -9.28 16 5 C 0.08 1.79 7.22 43.10 0.31 2.10 16 6 C -0.07 -1.03 9.99 71.24 0.71 -0.31 16 7 C -0.27 -6.42 5.67 -20.15 -0.11 -6.53 16 8 C 0.22 4.52 5.47 85.63 0.47 4.98 16 9 N -0.62 -15.10 2.86 -869.32 -2.49 -17.59 16 10 C 0.07 1.40 10.08 127.77 1.29 2.68 16 11 C 0.70 22.07 8.28 179.05 1.48 23.55 16 12 O -0.61 -21.39 12.85 -3.97 -0.05 -21.45 16 13 N -0.73 -24.66 5.39 -482.31 -2.60 -27.26 16 14 C 0.14 5.32 6.15 85.63 0.53 5.85 16 15 C 0.43 20.08 7.85 87.66 0.69 20.76 16 16 O -0.63 -32.46 15.24 -3.07 -0.05 -32.51 16 17 N -0.56 -28.13 5.29 -306.99 -1.62 -29.75 16 18 C -0.34 -18.57 9.68 84.04 0.81 -17.75 16 19 H 0.09 4.94 7.16 -2.91 -0.02 4.92 16 20 C -0.01 -0.55 5.50 84.93 0.47 -0.08 16 21 N -0.92 -48.64 13.05 21.66 0.28 -48.35 16 22 Si 1.00 41.72 29.55 68.60 2.03 43.74 16 23 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 24 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 25 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 26 C 0.10 2.50 6.93 41.41 0.29 2.79 16 27 C -0.08 -1.75 8.40 71.24 0.60 -1.15 16 28 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 30 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.10 1.42 7.68 -2.39 -0.02 1.41 16 32 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.09 0.97 5.69 -2.39 -0.01 0.96 16 36 H 0.11 1.60 7.72 -2.39 -0.02 1.58 16 37 H 0.08 1.88 6.45 -2.39 -0.02 1.87 16 38 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.10 1.38 5.72 -2.38 -0.01 1.36 16 40 H 0.05 1.19 6.65 -2.39 -0.02 1.17 16 41 H 0.41 13.80 5.28 -92.70 -0.49 13.31 16 42 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 43 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 44 H 0.40 19.25 7.90 -92.70 -0.73 18.51 16 45 H 0.28 13.92 8.31 -92.70 -0.77 13.15 16 46 H 0.06 1.69 7.74 -2.39 -0.02 1.67 16 47 H 0.08 1.43 7.74 -2.39 -0.02 1.41 16 48 H 0.09 2.24 6.14 -2.39 -0.01 2.22 16 Total: -1.00 -70.98 393.41 2.33 -68.65 By element: Atomic # 1 Polarization: 46.03 SS G_CDS: -0.21 Total: 45.82 kcal Atomic # 6 Polarization: 29.26 SS G_CDS: 8.85 Total: 38.11 kcal Atomic # 7 Polarization: -134.14 SS G_CDS: -8.23 Total: -142.37 kcal Atomic # 8 Polarization: -53.85 SS G_CDS: -0.10 Total: -53.95 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.74 kcal Total: -70.98 2.33 -68.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001312661064.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.976 kcal (2) G-P(sol) polarization free energy of solvation -70.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds