Wall clock time and date at job start Tue Mar 31 2020 20:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42903 * 109.47234 * 2 1 4 4 C 1.42894 * 114.00252 * 180.02562 * 3 2 1 5 5 H 1.09001 * 110.37195 * 30.73541 * 4 3 2 6 6 C 1.54008 * 110.32792 * 268.54576 * 4 3 2 7 7 N 1.47480 * 107.08454 * 242.41566 * 6 4 3 8 8 C 1.34777 * 127.03281 * 154.52018 * 7 6 4 9 9 O 1.21563 * 119.99934 * 180.02562 * 8 7 6 10 10 C 1.47801 * 120.00087 * 0.29663 * 8 7 6 11 11 C 1.40921 * 127.23622 * 179.72915 * 10 8 7 12 12 N 1.31137 * 105.77532 * 179.97438 * 11 10 8 13 13 N 1.28525 * 109.05849 * 0.02562 * 12 11 10 14 14 C 1.46500 * 124.44292 * 179.97438 * 13 12 11 15 15 C 1.52992 * 109.47094 * 90.02027 * 14 13 12 16 16 N 1.28588 * 111.11126 * 359.72055 * 13 12 11 17 17 C 1.48119 * 105.93136 * 334.77737 * 7 6 4 18 18 C 1.54593 * 103.42392 * 39.02650 * 17 7 6 19 19 H 1.09000 * 110.72827 * 81.23761 * 18 17 7 20 20 C 1.53003 * 110.83248 * 204.44679 * 18 17 7 21 21 N 1.46501 * 109.46890 * 288.55907 * 20 18 17 22 22 C 1.36930 * 120.00093 * 180.02562 * 21 20 18 23 23 H 1.08003 * 120.00201 * 0.02562 * 22 21 20 24 24 C 1.38809 * 120.00345 * 180.02562 * 22 21 20 25 25 N 1.31628 * 119.99981 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 120.00280 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47231 * 89.99820 * 26 24 22 28 28 H 1.48506 * 109.47226 * 209.99872 * 26 24 22 29 29 H 1.48502 * 109.47066 * 329.99539 * 26 24 22 30 30 H 1.08994 * 109.47065 * 299.99824 * 1 2 3 31 31 H 1.09002 * 109.47114 * 60.00333 * 1 2 3 32 32 H 1.09003 * 109.46859 * 179.97438 * 1 2 3 33 33 H 1.09007 * 109.47382 * 240.00164 * 2 1 3 34 34 H 1.09001 * 109.47691 * 120.00158 * 2 1 3 35 35 H 1.09004 * 109.91067 * 123.05108 * 6 4 3 36 36 H 1.08998 * 110.07160 * 1.86927 * 6 4 3 37 37 H 1.07998 * 127.11783 * 359.97438 * 11 10 8 38 38 H 1.08996 * 109.46991 * 210.02314 * 14 13 12 39 39 H 1.09005 * 109.46910 * 330.01939 * 14 13 12 40 40 H 1.08996 * 109.47436 * 300.00014 * 15 14 13 41 41 H 1.09005 * 109.47314 * 60.00159 * 15 14 13 42 42 H 1.09005 * 109.47015 * 180.02562 * 15 14 13 43 43 H 1.09008 * 110.65580 * 157.51347 * 17 7 6 44 44 H 1.09004 * 110.66223 * 280.62389 * 17 7 6 45 45 H 1.08998 * 109.46969 * 48.55628 * 20 18 17 46 46 H 1.08995 * 109.46778 * 168.56588 * 20 18 17 47 47 H 0.97004 * 119.99994 * 0.02562 * 21 20 18 48 48 H 0.97003 * 119.99672 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.8782 0.6146 -0.5231 6 6 3.9618 1.5387 1.4429 7 7 4.6231 2.8487 1.5906 8 6 4.8030 3.5431 2.7315 9 8 5.3690 4.6186 2.7057 10 6 4.3174 2.9943 4.0151 11 6 4.4276 3.5834 5.2905 12 7 3.8591 2.7432 6.1216 13 7 3.4302 1.7265 5.4626 14 6 2.7393 0.5820 6.0618 15 6 1.2322 0.8451 6.0736 16 7 3.6823 1.8482 4.2075 17 6 5.0436 3.2478 0.2275 18 6 3.8640 2.7897 -0.6605 19 1 3.0532 3.5175 -0.6306 20 6 4.3259 2.5547 -2.1001 21 7 4.6156 3.8422 -2.7362 22 6 5.0473 3.8824 -4.0351 23 1 5.1738 2.9650 -4.5907 24 6 5.3223 5.1023 -4.6377 25 7 5.1676 6.2205 -3.9607 26 14 5.9105 5.1571 -6.4098 27 1 4.7392 5.2545 -7.3173 28 1 6.7869 6.3401 -6.6040 29 1 6.6731 3.9204 -6.7167 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 4.6805 0.7381 1.6181 36 1 3.1364 1.4577 2.1501 37 1 4.8855 4.5308 5.5335 38 1 2.9472 -0.3144 5.4777 39 1 3.0913 0.4395 7.0836 40 1 1.0244 1.7416 6.6577 41 1 0.8803 0.9876 5.0518 42 1 0.7182 -0.0062 6.5199 43 1 5.1733 4.3284 0.1661 44 1 5.9605 2.7324 -0.0585 45 1 5.2261 1.9402 -2.0971 46 1 3.5390 2.0441 -2.6553 47 1 4.5016 4.6663 -2.2373 48 1 5.3595 7.0729 -4.3819 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316688694.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:54 Heat of formation + Delta-G solvation = 51.260166 kcal Electronic energy + Delta-G solvation = -29816.495337 eV Core-core repulsion = 25717.245683 eV Total energy + Delta-G solvation = -4099.249654 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.86447 -40.04842 -38.40134 -36.51790 -35.20857 -34.66837 -33.02070 -32.09363 -31.29275 -30.76702 -29.56488 -28.24134 -26.23780 -24.94386 -24.02993 -23.18021 -22.77736 -21.95383 -21.55889 -20.12500 -19.68380 -17.73105 -17.44831 -17.03179 -16.88296 -16.62295 -16.00819 -15.52888 -15.27324 -15.16934 -14.62786 -14.58615 -14.37152 -13.89888 -13.69480 -13.26602 -13.19731 -13.07016 -12.84634 -12.71531 -12.53057 -12.40479 -12.20242 -11.96508 -11.92160 -11.71407 -11.43612 -11.20210 -11.05520 -10.99815 -10.75065 -10.71098 -10.63759 -10.36060 -10.16160 -10.01314 -9.75161 -9.66995 -9.50704 -8.85664 -8.58803 -6.89988 -5.72183 -3.01892 1.15057 1.76326 1.84820 2.87402 3.22851 3.46738 3.51130 3.53550 3.61617 3.69822 4.26294 4.30547 4.50910 4.57870 4.60042 4.64648 4.77934 4.90317 4.97419 5.02624 5.07368 5.15415 5.17223 5.26035 5.35532 5.42758 5.44781 5.52697 5.58440 5.62657 5.71364 5.73684 5.79199 5.83408 5.93026 6.01121 6.08576 6.18824 6.30168 6.35454 6.39134 6.71274 6.77664 7.28428 7.50010 7.72686 7.87436 8.13366 8.45603 9.56971 10.13392 10.48125 11.50359 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013775 B = 0.002865 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.233857 B = 9771.276337 C =11439.219722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.371 6.371 4 C 0.083 3.917 5 H 0.081 0.919 6 C 0.081 3.919 7 N -0.603 5.603 8 C 0.623 3.377 9 O -0.523 6.523 10 C -0.037 4.037 11 C 0.035 3.965 12 N -0.292 5.292 13 N -0.145 5.145 14 C 0.133 3.867 15 C -0.172 4.172 16 N -0.247 5.247 17 C 0.117 3.883 18 C -0.102 4.102 19 H 0.096 0.904 20 C 0.166 3.834 21 N -0.731 5.731 22 C -0.241 4.241 23 H 0.070 0.930 24 C -0.013 4.013 25 N -0.930 5.930 26 Si 0.907 3.093 27 H -0.290 1.290 28 H -0.291 1.291 29 H -0.282 1.282 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.050 0.950 34 H 0.045 0.955 35 H 0.069 0.931 36 H 0.097 0.903 37 H 0.208 0.792 38 H 0.110 0.890 39 H 0.111 0.889 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.087 0.913 43 H 0.097 0.903 44 H 0.081 0.919 45 H 0.022 0.978 46 H 0.026 0.974 47 H 0.385 0.615 48 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.960 -17.205 21.575 28.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.289 6.289 4 C 0.024 3.976 5 H 0.099 0.901 6 C -0.043 4.043 7 N -0.337 5.337 8 C 0.409 3.591 9 O -0.397 6.397 10 C -0.200 4.200 11 C -0.149 4.149 12 N -0.131 5.131 13 N -0.048 5.048 14 C 0.014 3.986 15 C -0.231 4.231 16 N -0.095 5.095 17 C -0.004 4.004 18 C -0.122 4.122 19 H 0.115 0.885 20 C 0.038 3.962 21 N -0.376 5.376 22 C -0.372 4.372 23 H 0.088 0.912 24 C -0.209 4.209 25 N -0.579 5.579 26 Si 0.738 3.262 27 H -0.218 1.218 28 H -0.218 1.218 29 H -0.208 1.208 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.088 0.912 36 H 0.115 0.885 37 H 0.225 0.775 38 H 0.128 0.872 39 H 0.129 0.871 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.106 0.894 43 H 0.116 0.884 44 H 0.099 0.901 45 H 0.040 0.960 46 H 0.043 0.957 47 H 0.219 0.781 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -8.340 -17.526 22.046 29.372 hybrid contribution 0.791 0.724 -1.136 1.562 sum -7.549 -16.802 20.909 27.866 Atomic orbital electron populations 1.21729 0.93950 1.01914 1.03204 1.22509 0.95530 0.84249 0.99923 1.88026 1.20240 1.25960 1.94714 1.23047 0.81481 0.99276 0.93825 0.90112 1.22783 0.98164 0.84866 0.98469 1.48478 1.57088 1.20848 1.07242 1.16179 0.79234 0.83402 0.80329 1.90857 1.43056 1.20524 1.85307 1.23055 1.06086 0.93964 0.96867 1.24847 1.00901 1.01093 0.88034 1.73994 1.14697 0.97580 1.26828 1.48318 1.39080 1.15790 1.01599 1.22080 0.92687 0.83785 1.00017 1.22198 0.93004 1.03819 1.04031 1.74452 1.14707 1.19550 1.00795 1.22591 0.96941 1.03053 0.77810 1.22551 0.97921 0.95871 0.95869 0.88543 1.20611 0.96829 0.90384 0.88339 1.42344 1.80674 1.02246 1.12319 1.19185 1.36832 0.92598 0.88624 0.91189 1.24753 1.02433 0.95393 0.98302 1.69669 1.55045 0.96879 1.36269 0.86194 0.78171 0.76921 0.84899 1.21759 1.21774 1.20796 0.92110 0.91641 0.91370 0.93157 0.93653 0.91232 0.88469 0.77501 0.87176 0.87121 0.91294 0.91166 0.89424 0.88420 0.90063 0.96031 0.95671 0.78087 0.93452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 10.28 37.15 0.38 -0.96 16 2 C 0.05 0.55 6.51 37.15 0.24 0.79 16 3 O -0.37 -5.11 9.94 -35.23 -0.35 -5.46 16 4 C 0.08 1.11 3.04 -25.36 -0.08 1.03 16 5 H 0.08 0.95 7.56 -51.93 -0.39 0.56 16 6 C 0.08 1.02 6.11 -2.98 -0.02 1.01 16 7 N -0.60 -9.25 3.29 -171.10 -0.56 -9.82 16 8 C 0.62 10.15 7.90 -12.35 -0.10 10.06 16 9 O -0.52 -10.05 17.16 5.31 0.09 -9.96 16 10 C -0.04 -0.51 7.04 -82.68 -0.58 -1.09 16 11 C 0.03 0.42 12.04 -16.83 -0.20 0.22 16 12 N -0.29 -3.29 12.01 30.90 0.37 -2.92 16 13 N -0.14 -1.45 3.94 -10.62 -0.04 -1.50 16 14 C 0.13 0.70 7.24 -4.05 -0.03 0.67 16 15 C -0.17 -0.78 10.24 37.15 0.38 -0.40 16 16 N -0.25 -2.96 9.41 33.42 0.31 -2.64 16 17 C 0.12 1.96 6.44 -2.31 -0.01 1.94 16 18 C -0.10 -1.71 2.80 -88.93 -0.25 -1.96 16 19 H 0.10 1.81 8.08 -51.93 -0.42 1.39 16 20 C 0.17 3.28 5.58 -4.04 -0.02 3.25 16 21 N -0.73 -18.51 5.52 -59.91 -0.33 -18.84 16 22 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 23 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 24 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 25 N -0.93 -28.55 13.06 55.49 0.72 -27.83 16 26 Si 0.91 22.59 29.55 -169.99 -5.02 17.57 16 27 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 28 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 29 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.05 0.48 8.10 -51.93 -0.42 0.06 16 34 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.10 1.23 6.05 -51.93 -0.31 0.92 16 37 H 0.21 2.05 8.06 -52.49 -0.42 1.62 16 38 H 0.11 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.11 0.38 8.14 -51.93 -0.42 -0.05 16 40 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 43 H 0.10 1.87 7.85 -51.92 -0.41 1.46 16 44 H 0.08 1.30 7.93 -51.93 -0.41 0.89 16 45 H 0.02 0.42 7.99 -51.93 -0.41 0.00 16 46 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.39 10.37 7.67 -40.82 -0.31 10.05 16 48 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 400.92 15.07 6.04 6.04 Total: -1.00 -35.18 400.92 -7.02 -42.20 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -7.71 Total: 5.96 kcal Atomic # 6 Polarization: 7.72 SS G_CDS: -0.54 Total: 7.19 kcal Atomic # 7 Polarization: -64.02 SS G_CDS: 0.47 Total: -63.54 kcal Atomic # 8 Polarization: -15.16 SS G_CDS: -0.26 Total: -15.42 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -35.18 -7.02 -42.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316688694.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.460 kcal (2) G-P(sol) polarization free energy of solvation -35.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds