Wall clock time and date at job start Tue Mar 31 2020 20:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42903 * 109.47234 * 2 1 4 4 C 1.42894 * 114.00252 * 180.02562 * 3 2 1 5 5 H 1.09001 * 110.37195 * 30.73541 * 4 3 2 6 6 C 1.54008 * 110.32792 * 268.54576 * 4 3 2 7 7 N 1.47480 * 107.08454 * 242.41566 * 6 4 3 8 8 C 1.34777 * 127.03281 * 154.52018 * 7 6 4 9 9 O 1.21563 * 119.99934 * 180.02562 * 8 7 6 10 10 C 1.47801 * 120.00087 * 0.29663 * 8 7 6 11 11 C 1.40921 * 127.23622 * 179.72915 * 10 8 7 12 12 N 1.31137 * 105.77532 * 179.97438 * 11 10 8 13 13 N 1.28525 * 109.05849 * 0.02562 * 12 11 10 14 14 C 1.46500 * 124.44292 * 179.97438 * 13 12 11 15 15 C 1.52992 * 109.47094 * 90.02027 * 14 13 12 16 16 N 1.28588 * 111.11126 * 359.72055 * 13 12 11 17 17 C 1.48119 * 105.93136 * 334.77737 * 7 6 4 18 18 C 1.54593 * 103.42392 * 39.02650 * 17 7 6 19 19 H 1.09000 * 110.72827 * 81.23761 * 18 17 7 20 20 C 1.53003 * 110.83248 * 204.44679 * 18 17 7 21 21 N 1.46501 * 109.46890 * 288.55907 * 20 18 17 22 22 C 1.36930 * 120.00093 * 180.02562 * 21 20 18 23 23 H 1.08003 * 120.00201 * 0.02562 * 22 21 20 24 24 C 1.38809 * 120.00345 * 180.02562 * 22 21 20 25 25 N 1.31628 * 119.99981 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 120.00280 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47231 * 89.99820 * 26 24 22 28 28 H 1.48506 * 109.47226 * 209.99872 * 26 24 22 29 29 H 1.48502 * 109.47066 * 329.99539 * 26 24 22 30 30 H 1.08994 * 109.47065 * 299.99824 * 1 2 3 31 31 H 1.09002 * 109.47114 * 60.00333 * 1 2 3 32 32 H 1.09003 * 109.46859 * 179.97438 * 1 2 3 33 33 H 1.09007 * 109.47382 * 240.00164 * 2 1 3 34 34 H 1.09001 * 109.47691 * 120.00158 * 2 1 3 35 35 H 1.09004 * 109.91067 * 123.05108 * 6 4 3 36 36 H 1.08998 * 110.07160 * 1.86927 * 6 4 3 37 37 H 1.07998 * 127.11783 * 359.97438 * 11 10 8 38 38 H 1.08996 * 109.46991 * 210.02314 * 14 13 12 39 39 H 1.09005 * 109.46910 * 330.01939 * 14 13 12 40 40 H 1.08996 * 109.47436 * 300.00014 * 15 14 13 41 41 H 1.09005 * 109.47314 * 60.00159 * 15 14 13 42 42 H 1.09005 * 109.47015 * 180.02562 * 15 14 13 43 43 H 1.09008 * 110.65580 * 157.51347 * 17 7 6 44 44 H 1.09004 * 110.66223 * 280.62389 * 17 7 6 45 45 H 1.08998 * 109.46969 * 48.55628 * 20 18 17 46 46 H 1.08995 * 109.46778 * 168.56588 * 20 18 17 47 47 H 0.97004 * 119.99994 * 0.02562 * 21 20 18 48 48 H 0.97003 * 119.99672 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.8782 0.6146 -0.5231 6 6 3.9618 1.5387 1.4429 7 7 4.6231 2.8487 1.5906 8 6 4.8030 3.5431 2.7315 9 8 5.3690 4.6186 2.7057 10 6 4.3174 2.9943 4.0151 11 6 4.4276 3.5834 5.2905 12 7 3.8591 2.7432 6.1216 13 7 3.4302 1.7265 5.4626 14 6 2.7393 0.5820 6.0618 15 6 1.2322 0.8451 6.0736 16 7 3.6823 1.8482 4.2075 17 6 5.0436 3.2478 0.2275 18 6 3.8640 2.7897 -0.6605 19 1 3.0532 3.5175 -0.6306 20 6 4.3259 2.5547 -2.1001 21 7 4.6156 3.8422 -2.7362 22 6 5.0473 3.8824 -4.0351 23 1 5.1738 2.9650 -4.5907 24 6 5.3223 5.1023 -4.6377 25 7 5.1676 6.2205 -3.9607 26 14 5.9105 5.1571 -6.4098 27 1 4.7392 5.2545 -7.3173 28 1 6.7869 6.3401 -6.6040 29 1 6.6731 3.9204 -6.7167 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 4.6805 0.7381 1.6181 36 1 3.1364 1.4577 2.1501 37 1 4.8855 4.5308 5.5335 38 1 2.9472 -0.3144 5.4777 39 1 3.0913 0.4395 7.0836 40 1 1.0244 1.7416 6.6577 41 1 0.8803 0.9876 5.0518 42 1 0.7182 -0.0062 6.5199 43 1 5.1733 4.3284 0.1661 44 1 5.9605 2.7324 -0.0585 45 1 5.2261 1.9402 -2.0971 46 1 3.5390 2.0441 -2.6553 47 1 4.5016 4.6663 -2.2373 48 1 5.3595 7.0729 -4.3819 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316688694.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:54 Heat of formation + Delta-G solvation = 25.695323 kcal Electronic energy + Delta-G solvation = -29817.603912 eV Core-core repulsion = 25717.245683 eV Total energy + Delta-G solvation = -4100.358229 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.74829 -41.27151 -39.58517 -37.70966 -36.44170 -35.82858 -34.21294 -33.53454 -32.40229 -31.61216 -30.96852 -29.42738 -27.62947 -26.08556 -25.24830 -24.25907 -23.90767 -23.13943 -22.38611 -21.48106 -20.83357 -19.20907 -18.49759 -18.39014 -17.82776 -17.76765 -17.12730 -16.61609 -16.54572 -16.19579 -15.98854 -15.69921 -15.35797 -15.16223 -15.03213 -14.84954 -14.50608 -14.10045 -13.77403 -13.64926 -13.50239 -13.23688 -13.15567 -13.06743 -12.92100 -12.83127 -12.70710 -12.42291 -12.35567 -12.26348 -12.17940 -12.01698 -11.93583 -11.72431 -11.63762 -11.52899 -11.39769 -10.93445 -10.59490 -10.53113 -9.80754 -8.99411 -7.92364 -5.22328 0.14664 0.82923 1.14190 1.48628 1.50992 1.59342 1.73972 2.05444 2.55572 2.68490 2.77346 3.31181 3.41589 3.46735 3.68493 3.89444 3.92361 3.97178 3.99749 4.03944 4.22794 4.25256 4.25742 4.31655 4.46654 4.46861 4.51647 4.57596 4.59738 4.64924 4.70196 4.75082 4.76556 4.86000 4.90759 4.92865 5.07374 5.09689 5.15037 5.17158 5.25908 5.33631 5.51767 5.56724 6.28032 6.28681 6.34899 6.80647 7.05159 7.34714 8.09307 8.32022 9.31316 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013775 B = 0.002865 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.233857 B = 9771.276337 C =11439.219722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.046 3.954 3 O -0.396 6.396 4 C 0.094 3.906 5 H 0.107 0.893 6 C 0.087 3.913 7 N -0.604 5.604 8 C 0.619 3.381 9 O -0.566 6.566 10 C -0.063 4.063 11 C 0.029 3.971 12 N -0.294 5.294 13 N -0.130 5.130 14 C 0.118 3.882 15 C -0.167 4.167 16 N -0.241 5.241 17 C 0.122 3.878 18 C -0.094 4.094 19 H 0.068 0.932 20 C 0.169 3.831 21 N -0.747 5.747 22 C -0.242 4.242 23 H 0.081 0.919 24 C -0.079 4.079 25 N -0.972 5.972 26 Si 0.975 3.025 27 H -0.288 1.288 28 H -0.298 1.298 29 H -0.265 1.265 30 H 0.056 0.944 31 H 0.048 0.952 32 H 0.094 0.906 33 H 0.058 0.942 34 H 0.069 0.931 35 H 0.097 0.903 36 H 0.101 0.899 37 H 0.219 0.781 38 H 0.134 0.866 39 H 0.134 0.866 40 H 0.054 0.946 41 H 0.054 0.946 42 H 0.118 0.882 43 H 0.062 0.938 44 H 0.091 0.909 45 H 0.039 0.961 46 H 0.028 0.972 47 H 0.372 0.628 48 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.517 -20.924 22.512 31.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.030 4.030 3 O -0.316 6.316 4 C 0.035 3.965 5 H 0.124 0.876 6 C -0.036 4.036 7 N -0.337 5.337 8 C 0.406 3.594 9 O -0.443 6.443 10 C -0.224 4.224 11 C -0.153 4.153 12 N -0.134 5.134 13 N -0.035 5.035 14 C 0.001 3.999 15 C -0.225 4.225 16 N -0.091 5.091 17 C 0.000 4.000 18 C -0.114 4.114 19 H 0.086 0.914 20 C 0.042 3.958 21 N -0.389 5.389 22 C -0.374 4.374 23 H 0.099 0.901 24 C -0.271 4.271 25 N -0.622 5.622 26 Si 0.804 3.196 27 H -0.215 1.215 28 H -0.225 1.225 29 H -0.190 1.190 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.113 0.887 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.115 0.885 36 H 0.119 0.881 37 H 0.236 0.764 38 H 0.152 0.848 39 H 0.152 0.848 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.137 0.863 43 H 0.081 0.919 44 H 0.109 0.891 45 H 0.057 0.943 46 H 0.046 0.954 47 H 0.204 0.796 48 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -8.921 -21.328 22.988 32.603 hybrid contribution 0.836 1.725 -1.319 2.326 sum -8.085 -19.603 21.670 30.319 Atomic orbital electron populations 1.21759 0.93314 1.03359 1.02228 1.22789 0.96114 0.82638 1.01424 1.88006 1.20115 1.28595 1.94860 1.22938 0.81958 0.97680 0.93953 0.87563 1.22927 0.98704 0.83986 0.97967 1.48536 1.56940 1.21801 1.06390 1.16542 0.78635 0.82939 0.81276 1.90819 1.45062 1.22356 1.86111 1.22668 1.08283 0.95357 0.96085 1.25092 1.00901 1.01763 0.87562 1.74015 1.14807 0.97879 1.26654 1.48944 1.37468 1.16075 1.01027 1.22688 0.92733 0.82919 1.01515 1.22182 0.92641 1.04583 1.03078 1.74377 1.14189 1.18679 1.01811 1.22381 0.97450 1.01049 0.79122 1.22307 0.96963 0.97592 0.94549 0.91359 1.20740 0.97381 0.88083 0.89560 1.42595 1.80628 1.03808 1.11892 1.19647 1.35169 0.92895 0.89677 0.90089 1.25625 1.03686 0.95188 1.02590 1.69849 1.57091 0.97253 1.38046 0.85112 0.77536 0.77075 0.79859 1.21489 1.22487 1.19002 0.92467 0.93255 0.88695 0.92366 0.91307 0.88497 0.88115 0.76402 0.84812 0.84826 0.92635 0.92694 0.86316 0.91943 0.89121 0.94312 0.95409 0.79639 0.94110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 10.28 71.98 0.74 -1.60 16 2 C 0.05 0.81 6.51 71.98 0.47 1.27 16 3 O -0.40 -10.32 9.94 -148.98 -1.48 -11.81 16 4 C 0.09 2.34 3.04 31.49 0.10 2.44 16 5 H 0.11 2.13 7.56 -2.39 -0.02 2.11 16 6 C 0.09 2.03 6.11 86.53 0.53 2.56 16 7 N -0.60 -18.65 3.29 -813.51 -2.68 -21.33 16 8 C 0.62 20.76 7.90 86.77 0.69 21.44 16 9 O -0.57 -23.00 17.16 -3.91 -0.07 -23.07 16 10 C -0.06 -1.73 7.04 42.24 0.30 -1.43 16 11 C 0.03 0.70 12.04 85.45 1.03 1.73 16 12 N -0.29 -6.20 12.01 -56.16 -0.67 -6.88 16 13 N -0.13 -2.32 3.94 -187.50 -0.74 -3.06 16 14 C 0.12 0.84 7.24 86.38 0.63 1.47 16 15 C -0.17 -1.06 10.24 71.98 0.74 -0.32 16 16 N -0.24 -5.35 9.41 -48.17 -0.45 -5.80 16 17 C 0.12 4.21 6.44 86.61 0.56 4.77 16 18 C -0.09 -3.18 2.80 -9.70 -0.03 -3.21 16 19 H 0.07 2.70 8.08 -2.39 -0.02 2.68 16 20 C 0.17 6.59 5.58 86.38 0.48 7.07 16 21 N -0.75 -38.56 5.52 -343.46 -1.90 -40.46 16 22 C -0.24 -13.62 9.99 84.03 0.84 -12.78 16 23 H 0.08 4.29 7.83 -2.91 -0.02 4.26 16 24 C -0.08 -4.62 5.50 84.86 0.47 -4.16 16 25 N -0.97 -61.47 13.06 21.65 0.28 -61.19 16 26 Si 0.98 46.85 29.55 68.60 2.03 48.87 16 27 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 28 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 29 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 30 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.06 0.93 8.10 -2.38 -0.02 0.91 16 34 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.10 2.33 6.05 -2.39 -0.01 2.31 16 37 H 0.22 4.39 8.06 -2.91 -0.02 4.36 16 38 H 0.13 0.38 8.14 -2.39 -0.02 0.36 16 39 H 0.13 0.40 8.14 -2.38 -0.02 0.38 16 40 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 41 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 42 H 0.12 0.04 8.14 -2.38 -0.02 0.02 16 43 H 0.06 2.58 7.85 -2.38 -0.02 2.56 16 44 H 0.09 2.92 7.93 -2.39 -0.02 2.90 16 45 H 0.04 1.41 7.99 -2.39 -0.02 1.39 16 46 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 47 H 0.37 20.97 7.67 -92.71 -0.71 20.26 16 48 H 0.25 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -78.80 400.92 2.10 -76.70 By element: Atomic # 1 Polarization: 28.50 SS G_CDS: 0.25 Total: 28.75 kcal Atomic # 6 Polarization: 11.73 SS G_CDS: 7.53 Total: 19.26 kcal Atomic # 7 Polarization: -132.55 SS G_CDS: -6.16 Total: -138.71 kcal Atomic # 8 Polarization: -33.33 SS G_CDS: -1.55 Total: -34.88 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 2.03 Total: 48.87 kcal Total: -78.80 2.10 -76.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316688694.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.398 kcal (2) G-P(sol) polarization free energy of solvation -78.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds