Wall clock time and date at job start Tue Mar 31 2020 20:23:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46506 * 109.46688 * 2 1 4 4 C 1.34260 * 125.75083 * 125.00144 * 3 2 1 5 5 C 1.38045 * 107.41537 * 179.97438 * 4 3 2 6 6 C 1.47425 * 126.41396 * 179.97438 * 5 4 3 7 7 O 1.21609 * 119.99708 * 180.02562 * 6 5 4 8 8 N 1.34777 * 120.00088 * 0.02798 * 6 5 4 9 9 C 1.46499 * 119.99827 * 179.97438 * 8 6 5 10 10 C 1.53000 * 109.47001 * 179.97438 * 9 8 6 11 11 N 1.46901 * 109.47112 * 180.02562 * 10 9 8 12 12 C 1.46906 * 110.99839 * 66.05248 * 11 10 9 13 13 C 1.46901 * 111.00049 * 189.99952 * 11 10 9 14 14 C 1.50700 * 109.47316 * 169.99990 * 13 11 10 15 15 O 1.21299 * 119.99577 * 0.02562 * 14 13 11 16 16 N 1.34772 * 120.00167 * 179.97438 * 14 13 11 17 17 C 1.37098 * 119.99894 * 180.02562 * 16 14 13 18 18 H 1.08003 * 120.00047 * 0.02562 * 17 16 14 19 19 C 1.38952 * 119.99795 * 179.97438 * 17 16 14 20 20 N 1.31404 * 120.00270 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99680 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47052 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.46646 * 120.00347 * 21 19 17 24 24 H 1.48500 * 109.47105 * 240.00333 * 21 19 17 25 25 C 1.41288 * 107.16979 * 359.97438 * 5 4 3 26 26 C 1.50706 * 125.98878 * 179.97438 * 25 5 4 27 27 N 1.30450 * 108.02579 * 359.71710 * 25 5 4 28 28 H 1.09002 * 109.46820 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47230 * 299.99915 * 1 2 3 30 30 H 1.09000 * 109.47236 * 60.00319 * 1 2 3 31 31 H 1.08999 * 109.47230 * 240.00085 * 2 1 3 32 32 H 1.09000 * 109.47236 * 119.99680 * 2 1 3 33 33 H 1.08002 * 126.29377 * 0.02562 * 4 3 2 34 34 H 0.96994 * 120.00105 * 0.02562 * 8 6 5 35 35 H 1.09000 * 109.47621 * 300.00595 * 9 8 6 36 36 H 1.09003 * 109.47299 * 60.00241 * 9 8 6 37 37 H 1.08995 * 109.47531 * 300.00349 * 10 9 8 38 38 H 1.08997 * 109.46698 * 60.00558 * 10 9 8 39 39 H 1.08994 * 109.47070 * 59.99528 * 12 11 10 40 40 H 1.08999 * 109.47161 * 180.02562 * 12 11 10 41 41 H 1.09000 * 109.46737 * 299.99990 * 12 11 10 42 42 H 1.08994 * 109.47656 * 290.00468 * 13 11 10 43 43 H 1.09007 * 109.47031 * 50.00569 * 13 11 10 44 44 H 0.96993 * 120.00176 * 0.02562 * 16 14 13 45 45 H 0.96995 * 120.00520 * 179.97438 * 20 19 17 46 46 H 1.09006 * 109.46648 * 89.99989 * 26 25 5 47 47 H 1.09001 * 109.47520 * 210.00041 * 26 25 5 48 48 H 1.08998 * 109.47119 * 330.00415 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8689 1.9126 0.8925 5 6 3.0712 3.2309 0.5365 6 6 3.9324 4.2035 1.2336 7 8 4.0251 5.3420 0.8165 8 7 4.6168 3.8307 2.3332 9 6 5.4730 4.7971 3.0256 10 6 6.1297 4.1237 4.2324 11 7 6.9877 5.0928 4.9271 12 6 6.1882 6.1724 5.5216 13 6 7.8152 4.4295 5.9436 14 6 8.8481 5.3975 6.4604 15 8 8.8904 6.5289 6.0251 16 7 9.7241 5.0065 7.4070 17 6 10.6634 5.8874 7.8775 18 1 10.7011 6.8947 7.4899 19 6 11.5662 5.4844 8.8539 20 7 11.5200 4.2589 9.3259 21 14 12.8465 6.6844 9.4945 22 1 12.6890 7.9906 8.8059 23 1 12.6628 6.8705 10.9563 24 1 14.2052 6.1461 9.2309 25 6 2.2985 3.4736 -0.6212 26 6 2.2068 4.7800 -1.3670 27 7 1.6825 2.3672 -0.9346 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.3139 1.4022 1.7339 34 1 4.5431 2.9225 2.6657 35 1 6.2447 5.1533 2.3432 36 1 4.8700 5.6398 3.3639 37 1 5.3577 3.7679 4.9147 38 1 6.7326 3.2808 3.8945 39 1 5.4849 5.7506 6.2395 40 1 6.8481 6.8760 6.0291 41 1 5.6385 6.6919 4.7367 42 1 7.1829 4.0986 6.7675 43 1 8.3145 3.5680 5.5001 44 1 9.6900 4.1020 7.7554 45 1 12.1505 3.9774 10.0072 46 1 2.9789 4.8144 -2.1357 47 1 1.2253 4.8638 -1.8337 48 1 2.3500 5.6065 -0.6710 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317462420.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:59 Heat of formation + Delta-G solvation = 8.948319 kcal Electronic energy + Delta-G solvation = -27945.017652 eV Core-core repulsion = 23843.933219 eV Total energy + Delta-G solvation = -4101.084433 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.78882 -39.38553 -38.59188 -36.76125 -35.26140 -34.59463 -33.80453 -31.88417 -31.25523 -30.81102 -29.15040 -28.03894 -27.61129 -25.38192 -24.35156 -23.60793 -22.46184 -21.25480 -20.61168 -19.79796 -19.16241 -17.97125 -17.83794 -16.61561 -16.15662 -16.10580 -15.94451 -15.67221 -15.09233 -14.70752 -14.64138 -14.53646 -14.41717 -13.92614 -13.83913 -13.55335 -13.41529 -13.23905 -13.15873 -12.93453 -12.77711 -12.52504 -12.23651 -12.12338 -11.94723 -11.82547 -11.51842 -11.39349 -11.26901 -11.12095 -11.02705 -10.94603 -10.33601 -10.22316 -9.96228 -9.71161 -9.48595 -9.22690 -8.89935 -8.47256 -7.98555 -7.88292 -6.41835 -3.82400 1.14475 1.88859 1.90921 3.00998 3.16686 3.27454 3.30719 3.35022 3.84573 3.90407 4.07966 4.14474 4.29095 4.32370 4.42425 4.57696 4.73597 4.84309 4.96576 5.01324 5.10342 5.12617 5.14660 5.17598 5.25196 5.40756 5.49672 5.51737 5.64444 5.68043 5.70508 5.76434 5.88031 5.92761 5.94308 6.04023 6.25553 6.27426 6.31702 6.42343 6.57690 7.19515 7.22920 7.33165 7.43869 7.55809 8.06921 8.18211 8.61993 9.18623 9.54545 10.06467 10.76033 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.025435 B = 0.001622 C = 0.001548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.562735 B =17262.862173 C =18078.110336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.126 3.874 3 N -0.358 5.358 4 C 0.098 3.902 5 C -0.287 4.287 6 C 0.594 3.406 7 O -0.538 6.538 8 N -0.729 5.729 9 C 0.124 3.876 10 C 0.045 3.955 11 N -0.515 5.515 12 C 0.018 3.982 13 C 0.047 3.953 14 C 0.444 3.556 15 O -0.575 6.575 16 N -0.565 5.565 17 C -0.298 4.298 18 H 0.104 0.896 19 C 0.022 3.978 20 N -0.903 5.903 21 Si 0.929 3.071 22 H -0.268 1.268 23 H -0.282 1.282 24 H -0.282 1.282 25 C 0.132 3.868 26 C -0.078 4.078 27 N -0.300 5.300 28 H 0.077 0.923 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.100 0.900 33 H 0.182 0.818 34 H 0.394 0.606 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.035 0.965 38 H 0.078 0.922 39 H 0.015 0.985 40 H 0.098 0.902 41 H 0.064 0.936 42 H 0.048 0.952 43 H 0.088 0.912 44 H 0.392 0.608 45 H 0.271 0.729 46 H 0.080 0.920 47 H 0.070 0.930 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.688 -13.020 -15.559 29.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.005 3.995 3 N -0.136 5.136 4 C -0.053 4.053 5 C -0.302 4.302 6 C 0.381 3.619 7 O -0.415 6.415 8 N -0.381 5.381 9 C 0.000 4.000 10 C -0.084 4.084 11 N -0.239 5.239 12 C -0.130 4.130 13 C -0.084 4.084 14 C 0.229 3.771 15 O -0.459 6.459 16 N -0.202 5.202 17 C -0.427 4.427 18 H 0.122 0.878 19 C -0.180 4.180 20 N -0.544 5.544 21 Si 0.756 3.244 22 H -0.192 1.192 23 H -0.208 1.208 24 H -0.208 1.208 25 C -0.035 4.035 26 C -0.137 4.137 27 N -0.122 5.122 28 H 0.096 0.904 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.108 0.892 32 H 0.118 0.882 33 H 0.199 0.801 34 H 0.227 0.773 35 H 0.098 0.902 36 H 0.089 0.911 37 H 0.053 0.947 38 H 0.096 0.904 39 H 0.033 0.967 40 H 0.116 0.884 41 H 0.082 0.918 42 H 0.066 0.934 43 H 0.107 0.893 44 H 0.225 0.775 45 H 0.080 0.920 46 H 0.098 0.902 47 H 0.089 0.911 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -22.002 -12.020 -17.165 30.384 hybrid contribution 0.702 -0.882 2.120 2.401 sum -21.300 -12.902 -15.045 29.094 Atomic orbital electron populations 1.22058 0.93343 1.03153 1.03833 1.21844 0.96530 0.76830 1.04292 1.48537 1.34270 1.10616 1.20199 1.23098 0.93171 0.93870 0.95189 1.20267 1.11727 0.94416 1.03801 1.17190 0.78629 0.86671 0.79409 1.90766 1.64776 1.19987 1.65992 1.45755 1.48090 1.15060 1.29153 1.21320 0.93610 0.91351 0.93680 1.22253 0.95677 0.95425 0.95073 1.61442 1.22668 1.10663 1.29125 1.22631 0.96809 0.95209 0.98331 1.21867 0.95622 0.97073 0.93855 1.19715 0.84876 0.89048 0.83452 1.90499 1.73883 1.20772 1.60774 1.41865 1.29018 1.14558 1.34732 1.19762 1.08410 0.96060 1.18489 0.87813 1.25254 0.98869 0.96820 0.97024 1.69612 1.38102 1.16954 1.29753 0.85804 0.79868 0.80295 0.78405 1.19187 1.20814 1.20766 1.22500 0.92614 0.95020 0.93358 1.20358 1.02521 0.90778 0.99998 1.77170 1.24986 0.96769 1.13306 0.90404 0.91934 0.90899 0.89245 0.88204 0.80124 0.77270 0.90158 0.91103 0.94656 0.90354 0.96656 0.88390 0.91753 0.93388 0.89347 0.77530 0.91962 0.90157 0.91127 0.88502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.62 10.09 37.16 0.38 -0.25 16 2 C 0.13 0.47 7.21 -4.04 -0.03 0.44 16 3 N -0.36 -2.71 3.65 -60.80 -0.22 -2.93 16 4 C 0.10 0.69 10.95 -16.56 -0.18 0.51 16 5 C -0.29 -2.96 6.13 -105.07 -0.64 -3.60 16 6 C 0.59 7.17 7.81 -12.52 -0.10 7.07 16 7 O -0.54 -8.41 14.92 5.27 0.08 -8.33 16 8 N -0.73 -7.07 5.54 -61.38 -0.34 -7.41 16 9 C 0.12 1.48 5.60 -4.04 -0.02 1.45 16 10 C 0.04 0.52 5.07 -3.82 -0.02 0.50 16 11 N -0.51 -8.32 4.50 -244.37 -1.10 -9.42 16 12 C 0.02 0.29 8.96 60.07 0.54 0.83 16 13 C 0.05 0.81 5.45 -4.98 -0.03 0.79 16 14 C 0.44 10.32 7.48 -10.99 -0.08 10.24 16 15 O -0.58 -15.38 13.91 5.54 0.08 -15.30 16 16 N -0.56 -14.13 5.29 -10.96 -0.06 -14.19 16 17 C -0.30 -8.24 9.68 -14.93 -0.14 -8.38 16 18 H 0.10 3.02 7.16 -52.48 -0.38 2.65 16 19 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 20 N -0.90 -24.34 13.05 55.50 0.72 -23.62 16 21 Si 0.93 20.96 29.55 -169.99 -5.02 15.94 16 22 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 23 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 24 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 25 C 0.13 1.46 7.26 -82.02 -0.60 0.87 16 26 C -0.08 -0.76 9.92 36.01 0.36 -0.40 16 27 N -0.30 -3.17 12.34 33.90 0.42 -2.75 16 28 H 0.08 0.14 8.14 -51.93 -0.42 -0.29 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.10 0.09 8.06 -51.93 -0.42 -0.33 16 33 H 0.18 0.49 7.46 -52.49 -0.39 0.09 16 34 H 0.39 2.48 7.40 -40.82 -0.30 2.18 16 35 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.07 0.92 6.55 -51.93 -0.34 0.58 16 37 H 0.04 0.36 8.12 -51.93 -0.42 -0.06 16 38 H 0.08 0.81 7.93 -51.93 -0.41 0.39 16 39 H 0.01 0.22 8.14 -51.93 -0.42 -0.21 16 40 H 0.10 1.93 5.82 -51.93 -0.30 1.63 16 41 H 0.06 0.94 6.47 -51.93 -0.34 0.60 16 42 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 43 H 0.09 1.35 7.93 -51.93 -0.41 0.94 16 44 H 0.39 9.32 7.90 -40.82 -0.32 9.00 16 45 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 46 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 47 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.10 1.06 6.55 -51.93 -0.34 0.72 16 LS Contribution 400.09 15.07 6.03 6.03 Total: -1.00 -35.79 400.09 -7.40 -43.19 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -7.31 Total: 8.26 kcal Atomic # 6 Polarization: 11.20 SS G_CDS: -0.67 Total: 10.53 kcal Atomic # 7 Polarization: -59.74 SS G_CDS: -0.58 Total: -60.31 kcal Atomic # 8 Polarization: -23.79 SS G_CDS: 0.16 Total: -23.63 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -35.79 -7.40 -43.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317462420.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.138 kcal (2) G-P(sol) polarization free energy of solvation -35.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds