Wall clock time and date at job start Tue Mar 31 2020 20:23:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46506 * 109.46688 * 2 1 4 4 C 1.34260 * 125.75083 * 125.00144 * 3 2 1 5 5 C 1.38045 * 107.41537 * 179.97438 * 4 3 2 6 6 C 1.47425 * 126.41396 * 179.97438 * 5 4 3 7 7 O 1.21609 * 119.99708 * 180.02562 * 6 5 4 8 8 N 1.34777 * 120.00088 * 0.02798 * 6 5 4 9 9 C 1.46499 * 119.99827 * 179.97438 * 8 6 5 10 10 C 1.53000 * 109.47001 * 179.97438 * 9 8 6 11 11 N 1.46901 * 109.47112 * 180.02562 * 10 9 8 12 12 C 1.46906 * 110.99839 * 66.05248 * 11 10 9 13 13 C 1.46901 * 111.00049 * 189.99952 * 11 10 9 14 14 C 1.50700 * 109.47316 * 169.99990 * 13 11 10 15 15 O 1.21299 * 119.99577 * 0.02562 * 14 13 11 16 16 N 1.34772 * 120.00167 * 179.97438 * 14 13 11 17 17 C 1.37098 * 119.99894 * 180.02562 * 16 14 13 18 18 H 1.08003 * 120.00047 * 0.02562 * 17 16 14 19 19 C 1.38952 * 119.99795 * 179.97438 * 17 16 14 20 20 N 1.31404 * 120.00270 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99680 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47052 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.46646 * 120.00347 * 21 19 17 24 24 H 1.48500 * 109.47105 * 240.00333 * 21 19 17 25 25 C 1.41288 * 107.16979 * 359.97438 * 5 4 3 26 26 C 1.50706 * 125.98878 * 179.97438 * 25 5 4 27 27 N 1.30450 * 108.02579 * 359.71710 * 25 5 4 28 28 H 1.09002 * 109.46820 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47230 * 299.99915 * 1 2 3 30 30 H 1.09000 * 109.47236 * 60.00319 * 1 2 3 31 31 H 1.08999 * 109.47230 * 240.00085 * 2 1 3 32 32 H 1.09000 * 109.47236 * 119.99680 * 2 1 3 33 33 H 1.08002 * 126.29377 * 0.02562 * 4 3 2 34 34 H 0.96994 * 120.00105 * 0.02562 * 8 6 5 35 35 H 1.09000 * 109.47621 * 300.00595 * 9 8 6 36 36 H 1.09003 * 109.47299 * 60.00241 * 9 8 6 37 37 H 1.08995 * 109.47531 * 300.00349 * 10 9 8 38 38 H 1.08997 * 109.46698 * 60.00558 * 10 9 8 39 39 H 1.08994 * 109.47070 * 59.99528 * 12 11 10 40 40 H 1.08999 * 109.47161 * 180.02562 * 12 11 10 41 41 H 1.09000 * 109.46737 * 299.99990 * 12 11 10 42 42 H 1.08994 * 109.47656 * 290.00468 * 13 11 10 43 43 H 1.09007 * 109.47031 * 50.00569 * 13 11 10 44 44 H 0.96993 * 120.00176 * 0.02562 * 16 14 13 45 45 H 0.96995 * 120.00520 * 179.97438 * 20 19 17 46 46 H 1.09006 * 109.46648 * 89.99989 * 26 25 5 47 47 H 1.09001 * 109.47520 * 210.00041 * 26 25 5 48 48 H 1.08998 * 109.47119 * 330.00415 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8689 1.9126 0.8925 5 6 3.0712 3.2309 0.5365 6 6 3.9324 4.2035 1.2336 7 8 4.0251 5.3420 0.8165 8 7 4.6168 3.8307 2.3332 9 6 5.4730 4.7971 3.0256 10 6 6.1297 4.1237 4.2324 11 7 6.9877 5.0928 4.9271 12 6 6.1882 6.1724 5.5216 13 6 7.8152 4.4295 5.9436 14 6 8.8481 5.3975 6.4604 15 8 8.8904 6.5289 6.0251 16 7 9.7241 5.0065 7.4070 17 6 10.6634 5.8874 7.8775 18 1 10.7011 6.8947 7.4899 19 6 11.5662 5.4844 8.8539 20 7 11.5200 4.2589 9.3259 21 14 12.8465 6.6844 9.4945 22 1 12.6890 7.9906 8.8059 23 1 12.6628 6.8705 10.9563 24 1 14.2052 6.1461 9.2309 25 6 2.2985 3.4736 -0.6212 26 6 2.2068 4.7800 -1.3670 27 7 1.6825 2.3672 -0.9346 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.3139 1.4022 1.7339 34 1 4.5431 2.9225 2.6657 35 1 6.2447 5.1533 2.3432 36 1 4.8700 5.6398 3.3639 37 1 5.3577 3.7679 4.9147 38 1 6.7326 3.2808 3.8945 39 1 5.4849 5.7506 6.2395 40 1 6.8481 6.8760 6.0291 41 1 5.6385 6.6919 4.7367 42 1 7.1829 4.0986 6.7675 43 1 8.3145 3.5680 5.5001 44 1 9.6900 4.1020 7.7554 45 1 12.1505 3.9774 10.0072 46 1 2.9789 4.8144 -2.1357 47 1 1.2253 4.8638 -1.8337 48 1 2.3500 5.6065 -0.6710 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317462420.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:58 Heat of formation + Delta-G solvation = -19.597802 kcal Electronic energy + Delta-G solvation = -27946.255505 eV Core-core repulsion = 23843.933219 eV Total energy + Delta-G solvation = -4102.322286 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.43860 -40.47819 -40.09309 -38.10809 -36.01741 -35.73124 -35.41193 -33.25313 -32.48889 -31.57757 -30.17509 -29.06897 -28.56989 -26.98294 -25.53570 -24.41326 -23.10577 -22.33010 -21.39021 -20.92445 -20.53604 -19.82862 -18.64119 -17.75594 -17.26229 -16.99630 -16.88835 -16.56835 -16.52599 -16.13052 -15.89585 -15.43263 -15.40946 -15.07876 -14.93451 -14.89590 -14.49262 -14.22471 -13.98303 -13.86062 -13.74050 -13.43551 -13.17769 -13.02572 -13.01595 -12.87368 -12.82559 -12.53831 -12.51431 -12.37187 -12.32395 -12.12128 -12.04700 -11.75171 -11.44147 -10.90145 -10.36626 -10.25756 -10.12915 -9.96576 -9.59044 -9.19459 -8.44359 -5.92208 0.54645 1.10854 1.37915 1.42706 1.43390 1.57117 2.09623 2.10154 2.32990 2.46892 2.97381 3.23060 3.35223 3.47021 3.71686 3.89352 3.97262 4.08798 4.11726 4.17450 4.29247 4.33389 4.38751 4.41221 4.48662 4.52085 4.56682 4.68076 4.68711 4.74407 4.79079 4.80597 4.93094 4.99521 5.00653 5.04504 5.24065 5.25501 5.43741 5.44874 5.54089 5.89098 5.93787 6.08213 6.21488 6.52418 6.64550 6.70765 7.16859 7.35350 7.60762 8.17499 8.73212 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.025435 B = 0.001622 C = 0.001548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.562735 B =17262.862173 C =18078.110336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.116 3.884 3 N -0.354 5.354 4 C 0.126 3.874 5 C -0.319 4.319 6 C 0.592 3.408 7 O -0.585 6.585 8 N -0.710 5.710 9 C 0.133 3.867 10 C 0.054 3.946 11 N -0.540 5.540 12 C 0.024 3.976 13 C 0.061 3.939 14 C 0.439 3.561 15 O -0.616 6.616 16 N -0.575 5.575 17 C -0.331 4.331 18 H 0.077 0.923 19 C -0.012 4.012 20 N -0.920 5.920 21 Si 0.990 3.010 22 H -0.275 1.275 23 H -0.271 1.271 24 H -0.271 1.271 25 C 0.111 3.889 26 C -0.075 4.075 27 N -0.327 5.327 28 H 0.101 0.899 29 H 0.054 0.946 30 H 0.048 0.952 31 H 0.097 0.903 32 H 0.140 0.860 33 H 0.232 0.768 34 H 0.415 0.585 35 H 0.054 0.946 36 H 0.056 0.944 37 H 0.063 0.937 38 H 0.100 0.900 39 H 0.036 0.964 40 H 0.055 0.945 41 H 0.072 0.928 42 H 0.074 0.926 43 H 0.116 0.884 44 H 0.397 0.603 45 H 0.277 0.723 46 H 0.080 0.920 47 H 0.080 0.920 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.278 -16.384 -14.680 31.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.003 4.003 3 N -0.132 5.132 4 C -0.027 4.027 5 C -0.334 4.334 6 C 0.381 3.619 7 O -0.466 6.466 8 N -0.363 5.363 9 C 0.008 3.992 10 C -0.074 4.074 11 N -0.265 5.265 12 C -0.124 4.124 13 C -0.070 4.070 14 C 0.227 3.773 15 O -0.502 6.502 16 N -0.213 5.213 17 C -0.461 4.461 18 H 0.095 0.905 19 C -0.212 4.212 20 N -0.561 5.561 21 Si 0.814 3.186 22 H -0.200 1.200 23 H -0.196 1.196 24 H -0.197 1.197 25 C -0.055 4.055 26 C -0.133 4.133 27 N -0.150 5.150 28 H 0.120 0.880 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.115 0.885 32 H 0.158 0.842 33 H 0.248 0.752 34 H 0.252 0.748 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.119 0.881 39 H 0.054 0.946 40 H 0.073 0.927 41 H 0.091 0.909 42 H 0.092 0.908 43 H 0.134 0.866 44 H 0.231 0.769 45 H 0.086 0.914 46 H 0.099 0.901 47 H 0.099 0.901 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -22.622 -15.464 -16.283 31.875 hybrid contribution 0.794 0.084 1.789 1.959 sum -21.828 -15.380 -14.494 30.383 Atomic orbital electron populations 1.22029 0.93617 1.04185 1.02221 1.22290 0.96359 0.74986 1.06646 1.48924 1.33653 1.11324 1.19296 1.23739 0.91280 0.92503 0.95213 1.20203 1.12972 0.95794 1.04473 1.17502 0.78534 0.86359 0.79541 1.90743 1.66439 1.22081 1.67375 1.45475 1.46932 1.15667 1.28240 1.21062 0.92962 0.91673 0.93483 1.22249 0.96018 0.94607 0.94548 1.61318 1.24143 1.11994 1.29070 1.22462 0.96177 0.94929 0.98791 1.21735 0.94507 0.95660 0.95086 1.20879 0.84935 0.89507 0.82005 1.90483 1.74943 1.23082 1.61727 1.41921 1.29324 1.14435 1.35579 1.19676 1.10500 0.95833 1.20073 0.90515 1.25974 1.00103 0.98469 0.96614 1.69661 1.38697 1.17849 1.29903 0.84908 0.77728 0.77877 0.78045 1.20013 1.19638 1.19664 1.22683 0.93295 0.95420 0.94141 1.20279 1.03101 0.90354 0.99588 1.77107 1.25671 0.97338 1.14861 0.88049 0.92694 0.93320 0.88505 0.84225 0.75196 0.74823 0.92786 0.92557 0.91854 0.88124 0.94582 0.92653 0.90919 0.90846 0.86603 0.76928 0.91366 0.90148 0.90099 0.90256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.85 10.09 71.98 0.73 -0.13 16 2 C 0.12 0.45 7.21 86.38 0.62 1.07 16 3 N -0.35 -4.42 3.65 -346.28 -1.26 -5.69 16 4 C 0.13 1.32 10.95 84.28 0.92 2.24 16 5 C -0.32 -6.21 6.13 -20.15 -0.12 -6.34 16 6 C 0.59 13.97 7.81 86.66 0.68 14.65 16 7 O -0.59 -19.07 14.92 -4.06 -0.06 -19.13 16 8 N -0.71 -12.18 5.54 -466.37 -2.59 -14.77 16 9 C 0.13 2.98 5.60 86.38 0.48 3.46 16 10 C 0.05 1.06 5.07 86.30 0.44 1.50 16 11 N -0.54 -16.49 4.50 -927.05 -4.17 -20.66 16 12 C 0.02 0.77 8.96 127.69 1.14 1.91 16 13 C 0.06 1.96 5.45 85.56 0.47 2.43 16 14 C 0.44 20.50 7.48 87.66 0.66 21.16 16 15 O -0.62 -33.99 13.91 -3.09 -0.04 -34.04 16 16 N -0.57 -28.98 5.29 -306.98 -1.62 -30.60 16 17 C -0.33 -18.72 9.68 84.04 0.81 -17.91 16 18 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 19 C -0.01 -0.63 5.50 84.93 0.47 -0.17 16 20 N -0.92 -48.97 13.05 21.66 0.28 -48.69 16 21 Si 0.99 42.91 29.55 68.60 2.03 44.93 16 22 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 23 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 24 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 25 C 0.11 2.48 7.26 43.52 0.32 2.79 16 26 C -0.07 -1.56 9.92 71.24 0.71 -0.85 16 27 N -0.33 -6.69 12.34 -46.67 -0.58 -7.26 16 28 H 0.10 0.05 8.14 -2.39 -0.02 0.03 16 29 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.10 0.29 8.14 -2.39 -0.02 0.27 16 32 H 0.14 -0.52 8.06 -2.39 -0.02 -0.54 16 33 H 0.23 -0.17 7.46 -2.91 -0.02 -0.19 16 34 H 0.41 3.46 7.40 -92.71 -0.69 2.77 16 35 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.06 1.44 6.55 -2.39 -0.02 1.42 16 37 H 0.06 0.97 8.12 -2.39 -0.02 0.95 16 38 H 0.10 1.59 7.93 -2.39 -0.02 1.57 16 39 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.05 2.24 5.82 -2.39 -0.01 2.22 16 41 H 0.07 2.12 6.47 -2.39 -0.02 2.11 16 42 H 0.07 2.03 8.12 -2.39 -0.02 2.01 16 43 H 0.12 3.12 7.93 -2.38 -0.02 3.10 16 44 H 0.40 18.76 7.90 -92.71 -0.73 18.03 16 45 H 0.28 13.77 8.31 -92.71 -0.77 13.00 16 46 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 47 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 48 H 0.08 1.92 6.55 -2.39 -0.02 1.90 16 Total: -1.00 -82.94 400.09 -0.12 -83.06 By element: Atomic # 1 Polarization: 27.44 SS G_CDS: -0.42 Total: 27.02 kcal Atomic # 6 Polarization: 17.51 SS G_CDS: 8.32 Total: 25.82 kcal Atomic # 7 Polarization: -117.73 SS G_CDS: -9.94 Total: -127.67 kcal Atomic # 8 Polarization: -53.07 SS G_CDS: -0.10 Total: -53.17 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.93 kcal Total: -82.94 -0.12 -83.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317462420.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.464 kcal (2) G-P(sol) polarization free energy of solvation -82.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds