Wall clock time and date at job start Tue Mar 31 2020 19:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.50703 * 109.46801 * 65.00219 * 4 2 1 6 6 O 1.21280 * 120.00262 * 0.02562 * 5 4 2 7 7 N 1.34776 * 119.99815 * 179.97438 * 5 4 2 8 8 C 1.46500 * 120.00185 * 0.02562 * 7 5 4 9 9 C 1.46497 * 119.99939 * 180.02562 * 7 5 4 10 10 C 1.52999 * 109.47348 * 90.00104 * 9 7 5 11 11 N 1.46906 * 109.47183 * 180.02562 * 10 9 7 12 12 C 1.46902 * 111.00065 * 180.02562 * 11 10 9 13 13 C 1.50692 * 109.47013 * 179.97438 * 12 11 10 14 14 O 1.21291 * 120.00381 * 0.02562 * 13 12 11 15 15 N 1.34776 * 119.99870 * 179.97438 * 13 12 11 16 16 C 1.37101 * 120.00057 * 180.02562 * 15 13 12 17 17 H 1.07998 * 119.99959 * 359.97438 * 16 15 13 18 18 C 1.38954 * 120.00143 * 180.02562 * 16 15 13 19 19 N 1.31411 * 119.99982 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 119.99733 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.46879 * 90.00264 * 20 18 16 22 22 H 1.48500 * 109.47340 * 209.99837 * 20 18 16 23 23 H 1.48496 * 109.47501 * 330.00238 * 20 18 16 24 24 N 1.46499 * 109.46799 * 120.00100 * 2 1 3 25 25 C 1.34950 * 126.04099 * 34.71284 * 24 2 1 26 26 C 1.35315 * 107.74423 * 179.83807 * 25 24 2 27 27 C 1.39871 * 107.92375 * 0.42973 * 26 25 24 28 28 N 1.30831 * 108.19955 * 359.73088 * 27 26 25 29 29 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 31 31 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 32 32 H 1.09002 * 109.47069 * 184.99942 * 4 2 1 33 33 H 1.08991 * 109.47625 * 305.00262 * 4 2 1 34 34 H 1.08999 * 109.47225 * 89.99719 * 8 7 5 35 35 H 1.09002 * 109.47327 * 210.00076 * 8 7 5 36 36 H 1.09002 * 109.46742 * 330.00123 * 8 7 5 37 37 H 1.09000 * 109.47433 * 210.00029 * 9 7 5 38 38 H 1.09004 * 109.47370 * 329.99721 * 9 7 5 39 39 H 1.09000 * 109.47154 * 299.99431 * 10 9 7 40 40 H 1.08996 * 109.47224 * 60.00159 * 10 9 7 41 41 H 1.00895 * 111.00343 * 56.04023 * 11 10 9 42 42 H 1.08997 * 109.46819 * 299.99750 * 12 11 10 43 43 H 1.09003 * 109.47193 * 59.99351 * 12 11 10 44 44 H 0.96995 * 120.00379 * 359.97438 * 15 13 12 45 45 H 0.97000 * 119.99821 * 180.02562 * 19 18 16 46 46 H 1.07998 * 126.12520 * 0.02562 * 25 24 2 47 47 H 1.07999 * 126.03675 * 180.16099 * 26 25 24 48 48 H 1.07996 * 125.89659 * 179.71517 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 8 1.0118 1.0874 -2.3633 7 7 1.9854 -0.3915 -3.7001 8 6 2.7464 -1.6358 -3.8369 9 6 1.5984 0.3654 -4.8932 10 6 2.6962 1.3746 -5.2354 11 7 2.3078 2.1340 -6.4314 12 6 3.3408 3.1146 -6.7910 13 6 2.9084 3.8720 -8.0198 14 8 1.8441 3.6202 -8.5443 15 7 3.7038 4.8301 -8.5355 16 6 3.3102 5.5196 -9.6533 17 1 2.3629 5.2948 -10.1207 18 6 4.1305 6.5070 -10.1853 19 7 3.7529 7.1682 -11.2563 20 14 5.7692 6.8953 -9.3771 21 1 6.8291 6.0423 -9.9724 22 1 6.1031 8.3255 -9.5971 23 1 5.6783 6.6268 -7.9195 24 7 2.0183 -0.6906 1.1962 25 6 1.4372 -1.7526 1.7927 26 6 2.1966 -2.0928 2.8597 27 6 3.2734 -1.2024 2.9231 28 7 3.1676 -0.3615 1.9264 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 3.1264 -0.7995 -1.2055 33 1 1.6055 -1.7198 -1.2951 34 1 2.0570 -2.4757 -3.9230 35 1 3.3696 -1.5843 -4.7297 36 1 3.3788 -1.7733 -2.9598 37 1 1.4614 -0.3199 -5.7297 38 1 0.6652 0.8949 -4.7008 39 1 2.8332 2.0600 -4.3990 40 1 3.6293 0.8452 -5.4279 41 1 1.4133 2.5821 -6.3006 42 1 3.4830 3.8118 -5.9653 43 1 4.2781 2.5968 -6.9947 44 1 4.5544 5.0323 -8.1155 45 1 4.3257 7.8572 -11.6279 46 1 0.5304 -2.2447 1.4736 47 1 2.0028 -2.9053 3.5443 48 1 4.0567 -1.2080 3.6666 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317652000.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:38 Heat of formation + Delta-G solvation = 22.234260 kcal Electronic energy + Delta-G solvation = -28101.031380 eV Core-core repulsion = 24000.523068 eV Total energy + Delta-G solvation = -4100.508312 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.63337 -40.42164 -38.49419 -36.86874 -35.63980 -35.14710 -33.88172 -31.67954 -31.09097 -30.37830 -29.84203 -28.36784 -27.24083 -25.93490 -24.15138 -23.43795 -22.21687 -21.43067 -20.46265 -19.55830 -19.29330 -18.35745 -18.07731 -16.90245 -16.64150 -16.58718 -15.93909 -15.63998 -15.29599 -15.13252 -14.84843 -14.42815 -14.20147 -13.95088 -13.87318 -13.75036 -13.50122 -13.30963 -13.24742 -13.09086 -13.03234 -12.82156 -12.45997 -12.39449 -12.24142 -11.95521 -11.86014 -11.71031 -11.66513 -11.24733 -11.09610 -11.02889 -10.59411 -10.24022 -9.97546 -9.80713 -9.57263 -9.12149 -8.99201 -8.59718 -8.21724 -8.16519 -6.31006 -3.82430 1.51316 1.97939 2.16150 2.49679 2.62517 3.03072 3.07117 3.15300 3.73823 3.94575 4.04708 4.10259 4.14209 4.22275 4.43276 4.55225 4.59421 4.67874 4.82336 4.85455 4.88314 4.92739 4.97474 5.11103 5.20292 5.22915 5.24929 5.30223 5.31882 5.39125 5.48327 5.58694 5.64076 5.68447 5.71266 5.78100 5.82427 5.92112 6.10014 6.28195 6.63901 6.91455 7.02245 7.35704 7.51770 7.58213 7.71948 8.14476 8.59775 8.94928 9.42455 9.82483 10.82087 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.020936 B = 0.001689 C = 0.001630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.091665 B =16576.739029 C =17168.744664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.175 3.825 3 H 0.112 0.888 4 C -0.152 4.152 5 C 0.519 3.481 6 O -0.531 6.531 7 N -0.612 5.612 8 C 0.074 3.926 9 C 0.116 3.884 10 C 0.046 3.954 11 N -0.666 5.666 12 C 0.050 3.950 13 C 0.450 3.550 14 O -0.564 6.564 15 N -0.590 5.590 16 C -0.306 4.306 17 H 0.120 0.880 18 C 0.042 3.958 19 N -0.881 5.881 20 Si 0.880 3.120 21 H -0.270 1.270 22 H -0.276 1.276 23 H -0.270 1.270 24 N -0.367 5.367 25 C 0.055 3.945 26 C -0.277 4.277 27 C 0.043 3.957 28 N -0.297 5.297 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.100 0.900 34 H 0.060 0.940 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.031 0.969 40 H 0.070 0.930 41 H 0.353 0.647 42 H 0.045 0.955 43 H 0.087 0.913 44 H 0.370 0.630 45 H 0.273 0.727 46 H 0.171 0.829 47 H 0.146 0.854 48 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.774 -22.712 27.417 35.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.073 3.927 3 H 0.130 0.870 4 C -0.193 4.193 5 C 0.306 3.694 6 O -0.408 6.408 7 N -0.345 5.345 8 C -0.069 4.069 9 C -0.006 4.006 10 C -0.085 4.085 11 N -0.299 5.299 12 C -0.083 4.083 13 C 0.236 3.764 14 O -0.446 6.446 15 N -0.230 5.230 16 C -0.434 4.434 17 H 0.137 0.863 18 C -0.161 4.161 19 N -0.521 5.521 20 Si 0.706 3.294 21 H -0.196 1.196 22 H -0.202 1.202 23 H -0.195 1.195 24 N -0.150 5.150 25 C -0.091 4.091 26 C -0.306 4.306 27 C -0.144 4.144 28 N -0.117 5.117 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.121 0.879 32 H 0.121 0.879 33 H 0.118 0.882 34 H 0.079 0.921 35 H 0.098 0.902 36 H 0.089 0.911 37 H 0.109 0.891 38 H 0.105 0.895 39 H 0.049 0.951 40 H 0.089 0.911 41 H 0.172 0.828 42 H 0.063 0.937 43 H 0.105 0.895 44 H 0.203 0.797 45 H 0.084 0.916 46 H 0.188 0.812 47 H 0.164 0.836 48 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -1.096 -21.559 25.785 33.628 hybrid contribution 1.106 0.223 1.604 1.961 sum 0.010 -21.337 27.389 34.719 Atomic orbital electron populations 1.22328 0.92020 1.03001 1.05281 1.20952 0.95378 0.97006 0.79408 0.87033 1.22101 1.04028 1.00727 0.92427 1.20269 0.79352 0.85491 0.84271 1.90724 1.39807 1.24209 1.86089 1.47810 1.55690 1.24891 1.06138 1.21896 0.96045 0.85462 1.03516 1.21458 0.98347 0.94787 0.86047 1.22257 0.98586 0.96122 0.91538 1.59998 1.05832 1.29348 1.34772 1.21688 0.95993 0.93967 0.96663 1.19678 0.86477 0.83192 0.87068 1.90564 1.23574 1.67791 1.62691 1.42202 1.19174 1.34105 1.27496 1.19441 1.07075 1.14618 1.02296 0.86252 1.25037 0.98328 0.96486 0.96278 1.69622 1.37718 1.23704 1.21048 0.86669 0.84207 0.79084 0.79411 1.19593 1.20161 1.19543 1.48961 1.19363 1.24241 1.22397 1.22519 0.99798 0.91323 0.95501 1.21528 0.99247 1.06546 1.03326 1.23917 0.99365 0.93809 0.97266 1.77419 1.02979 1.23657 1.07678 0.92094 0.91467 0.87885 0.87912 0.88209 0.92098 0.90233 0.91057 0.89094 0.89484 0.95060 0.91115 0.82761 0.93682 0.89499 0.79686 0.91611 0.81156 0.83615 0.80108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.14 8.57 37.16 0.32 -0.82 16 2 C 0.17 1.37 3.05 -67.93 -0.21 1.17 16 3 H 0.11 1.10 7.95 -51.93 -0.41 0.69 16 4 C -0.15 -0.99 4.05 -27.88 -0.11 -1.10 16 5 C 0.52 4.76 7.39 -10.98 -0.08 4.68 16 6 O -0.53 -6.68 13.55 5.56 0.08 -6.60 16 7 N -0.61 -5.00 2.87 -181.57 -0.52 -5.52 16 8 C 0.07 0.36 10.24 59.85 0.61 0.97 16 9 C 0.12 1.18 5.67 -4.04 -0.02 1.15 16 10 C 0.05 0.55 6.01 -3.82 -0.02 0.52 16 11 N -0.67 -10.37 6.12 -115.06 -0.70 -11.07 16 12 C 0.05 0.84 6.17 -4.98 -0.03 0.81 16 13 C 0.45 10.36 7.82 -10.99 -0.09 10.28 16 14 O -0.56 -15.29 15.78 5.55 0.09 -15.21 16 15 N -0.59 -14.26 5.09 -10.97 -0.06 -14.31 16 16 C -0.31 -8.74 10.16 -14.93 -0.15 -8.89 16 17 H 0.12 3.89 7.39 -52.49 -0.39 3.51 16 18 C 0.04 1.15 5.50 -17.47 -0.10 1.06 16 19 N -0.88 -25.89 13.96 55.50 0.77 -25.12 16 20 Si 0.88 19.55 27.74 -169.99 -4.71 14.84 16 21 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 22 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 23 H -0.27 -5.50 6.52 56.52 0.37 -5.13 16 24 N -0.37 -3.11 3.53 -54.86 -0.19 -3.31 16 25 C 0.05 0.36 10.59 -17.22 -0.18 0.18 16 26 C -0.28 -1.85 10.80 -40.01 -0.43 -2.28 16 27 C 0.04 0.34 12.03 -17.37 -0.21 0.13 16 28 N -0.30 -3.07 12.58 30.62 0.39 -2.68 16 29 H 0.06 0.29 7.15 -51.93 -0.37 -0.08 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.10 0.87 5.95 -51.93 -0.31 0.57 16 32 H 0.10 0.66 7.40 -51.93 -0.38 0.28 16 33 H 0.10 0.45 8.11 -51.93 -0.42 0.03 16 34 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 35 H 0.08 0.37 8.07 -51.93 -0.42 -0.05 16 36 H 0.07 0.26 6.44 -51.93 -0.33 -0.08 16 37 H 0.09 0.85 8.07 -51.93 -0.42 0.43 16 38 H 0.09 1.01 7.42 -51.93 -0.39 0.62 16 39 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.35 5.79 8.43 -39.29 -0.33 5.46 16 42 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 44 H 0.37 7.86 5.76 -40.82 -0.24 7.63 16 45 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 46 H 0.17 0.61 7.26 -52.49 -0.38 0.23 16 47 H 0.15 0.65 8.06 -52.49 -0.42 0.23 16 48 H 0.18 0.90 8.06 -52.49 -0.42 0.48 16 LS Contribution 398.68 15.07 6.01 6.01 Total: -1.00 -36.27 398.68 -6.91 -43.17 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: -7.34 Total: 11.96 kcal Atomic # 6 Polarization: 8.55 SS G_CDS: -0.70 Total: 7.84 kcal Atomic # 7 Polarization: -61.70 SS G_CDS: -0.32 Total: -62.02 kcal Atomic # 8 Polarization: -21.97 SS G_CDS: 0.16 Total: -21.81 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -4.71 Total: 14.84 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -36.27 -6.91 -43.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317652000.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.408 kcal (2) G-P(sol) polarization free energy of solvation -36.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds