Wall clock time and date at job start Tue Mar 31 2020 19:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.50703 * 109.46801 * 65.00219 * 4 2 1 6 6 O 1.21280 * 120.00262 * 0.02562 * 5 4 2 7 7 N 1.34776 * 119.99815 * 179.97438 * 5 4 2 8 8 C 1.46500 * 120.00185 * 0.02562 * 7 5 4 9 9 C 1.46497 * 119.99939 * 180.02562 * 7 5 4 10 10 C 1.52999 * 109.47348 * 90.00104 * 9 7 5 11 11 N 1.46906 * 109.47183 * 180.02562 * 10 9 7 12 12 C 1.46902 * 111.00065 * 180.02562 * 11 10 9 13 13 C 1.50692 * 109.47013 * 179.97438 * 12 11 10 14 14 O 1.21291 * 120.00381 * 0.02562 * 13 12 11 15 15 N 1.34776 * 119.99870 * 179.97438 * 13 12 11 16 16 C 1.37101 * 120.00057 * 180.02562 * 15 13 12 17 17 H 1.07998 * 119.99959 * 359.97438 * 16 15 13 18 18 C 1.38954 * 120.00143 * 180.02562 * 16 15 13 19 19 N 1.31411 * 119.99982 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 119.99733 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.46879 * 90.00264 * 20 18 16 22 22 H 1.48500 * 109.47340 * 209.99837 * 20 18 16 23 23 H 1.48496 * 109.47501 * 330.00238 * 20 18 16 24 24 N 1.46499 * 109.46799 * 120.00100 * 2 1 3 25 25 C 1.34950 * 126.04099 * 34.71284 * 24 2 1 26 26 C 1.35315 * 107.74423 * 179.83807 * 25 24 2 27 27 C 1.39871 * 107.92375 * 0.42973 * 26 25 24 28 28 N 1.30831 * 108.19955 * 359.73088 * 27 26 25 29 29 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 31 31 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 32 32 H 1.09002 * 109.47069 * 184.99942 * 4 2 1 33 33 H 1.08991 * 109.47625 * 305.00262 * 4 2 1 34 34 H 1.08999 * 109.47225 * 89.99719 * 8 7 5 35 35 H 1.09002 * 109.47327 * 210.00076 * 8 7 5 36 36 H 1.09002 * 109.46742 * 330.00123 * 8 7 5 37 37 H 1.09000 * 109.47433 * 210.00029 * 9 7 5 38 38 H 1.09004 * 109.47370 * 329.99721 * 9 7 5 39 39 H 1.09000 * 109.47154 * 299.99431 * 10 9 7 40 40 H 1.08996 * 109.47224 * 60.00159 * 10 9 7 41 41 H 1.00895 * 111.00343 * 56.04023 * 11 10 9 42 42 H 1.08997 * 109.46819 * 299.99750 * 12 11 10 43 43 H 1.09003 * 109.47193 * 59.99351 * 12 11 10 44 44 H 0.96995 * 120.00379 * 359.97438 * 15 13 12 45 45 H 0.97000 * 119.99821 * 180.02562 * 19 18 16 46 46 H 1.07998 * 126.12520 * 0.02562 * 25 24 2 47 47 H 1.07999 * 126.03675 * 180.16099 * 26 25 24 48 48 H 1.07996 * 125.89659 * 179.71517 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 8 1.0118 1.0874 -2.3633 7 7 1.9854 -0.3915 -3.7001 8 6 2.7464 -1.6358 -3.8369 9 6 1.5984 0.3654 -4.8932 10 6 2.6962 1.3746 -5.2354 11 7 2.3078 2.1340 -6.4314 12 6 3.3408 3.1146 -6.7910 13 6 2.9084 3.8720 -8.0198 14 8 1.8441 3.6202 -8.5443 15 7 3.7038 4.8301 -8.5355 16 6 3.3102 5.5196 -9.6533 17 1 2.3629 5.2948 -10.1207 18 6 4.1305 6.5070 -10.1853 19 7 3.7529 7.1682 -11.2563 20 14 5.7692 6.8953 -9.3771 21 1 6.8291 6.0423 -9.9724 22 1 6.1031 8.3255 -9.5971 23 1 5.6783 6.6268 -7.9195 24 7 2.0183 -0.6906 1.1962 25 6 1.4372 -1.7526 1.7927 26 6 2.1966 -2.0928 2.8597 27 6 3.2734 -1.2024 2.9231 28 7 3.1676 -0.3615 1.9264 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 3.1264 -0.7995 -1.2055 33 1 1.6055 -1.7198 -1.2951 34 1 2.0570 -2.4757 -3.9230 35 1 3.3696 -1.5843 -4.7297 36 1 3.3788 -1.7733 -2.9598 37 1 1.4614 -0.3199 -5.7297 38 1 0.6652 0.8949 -4.7008 39 1 2.8332 2.0600 -4.3990 40 1 3.6293 0.8452 -5.4279 41 1 1.4133 2.5821 -6.3006 42 1 3.4830 3.8118 -5.9653 43 1 4.2781 2.5968 -6.9947 44 1 4.5544 5.0323 -8.1155 45 1 4.3257 7.8572 -11.6279 46 1 0.5304 -2.2447 1.4736 47 1 2.0028 -2.9053 3.5443 48 1 4.0567 -1.2080 3.6666 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317652000.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:37 Heat of formation + Delta-G solvation = -6.291852 kcal Electronic energy + Delta-G solvation = -28102.268365 eV Core-core repulsion = 24000.523068 eV Total energy + Delta-G solvation = -4101.745297 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.17725 -41.11433 -40.32631 -37.75963 -36.41879 -36.19642 -35.77400 -33.77594 -31.85261 -31.01176 -30.54169 -29.07479 -28.14579 -27.09690 -25.51246 -24.32349 -23.15390 -21.95960 -21.36718 -21.01383 -20.37433 -19.99016 -18.68716 -17.92754 -17.51448 -17.37400 -17.12861 -16.86867 -16.68138 -15.97797 -15.71646 -15.59044 -15.31390 -15.04343 -14.85687 -14.77121 -14.47835 -14.26434 -14.11535 -13.93273 -13.88024 -13.78367 -13.51018 -13.46691 -13.21088 -12.97919 -12.87516 -12.73006 -12.43664 -12.42074 -12.25119 -12.08405 -11.99939 -11.58178 -11.53731 -10.96980 -10.50712 -10.39413 -10.27302 -9.76473 -9.50971 -9.46106 -8.43308 -6.04488 0.99532 1.28970 1.33853 1.41590 1.42978 1.48196 1.91495 1.98355 1.99910 2.21181 2.74259 3.12493 3.36701 3.41102 3.55546 3.63370 3.96921 3.99193 4.08132 4.09725 4.11462 4.15131 4.27215 4.38476 4.40367 4.45643 4.46373 4.53340 4.66562 4.73533 4.76102 4.80921 4.82680 4.93764 4.95482 4.97140 5.17400 5.20603 5.39651 5.50637 5.78282 5.83985 5.96651 6.15990 6.24093 6.29399 6.56830 6.81735 6.85085 7.04976 7.36456 7.92398 8.74224 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.020936 B = 0.001689 C = 0.001630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.091665 B =16576.739029 C =17168.744664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.176 3.824 3 H 0.081 0.919 4 C -0.137 4.137 5 C 0.515 3.485 6 O -0.573 6.573 7 N -0.609 5.609 8 C 0.068 3.932 9 C 0.122 3.878 10 C 0.055 3.945 11 N -0.679 5.679 12 C 0.063 3.937 13 C 0.448 3.552 14 O -0.613 6.613 15 N -0.590 5.590 16 C -0.331 4.331 17 H 0.056 0.944 18 C -0.013 4.013 19 N -0.932 5.932 20 Si 0.965 3.035 21 H -0.255 1.255 22 H -0.274 1.274 23 H -0.234 1.234 24 N -0.375 5.375 25 C 0.056 3.944 26 C -0.284 4.284 27 C 0.036 3.964 28 N -0.346 5.346 29 H 0.087 0.913 30 H 0.061 0.939 31 H 0.084 0.916 32 H 0.107 0.893 33 H 0.128 0.872 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.101 0.899 38 H 0.066 0.934 39 H 0.021 0.979 40 H 0.089 0.911 41 H 0.344 0.656 42 H 0.069 0.931 43 H 0.118 0.882 44 H 0.390 0.610 45 H 0.280 0.720 46 H 0.202 0.798 47 H 0.168 0.832 48 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.571 -25.215 30.068 39.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.073 3.927 3 H 0.099 0.901 4 C -0.178 4.178 5 C 0.303 3.697 6 O -0.453 6.453 7 N -0.341 5.341 8 C -0.074 4.074 9 C -0.002 4.002 10 C -0.075 4.075 11 N -0.312 5.312 12 C -0.069 4.069 13 C 0.236 3.764 14 O -0.497 6.497 15 N -0.231 5.231 16 C -0.461 4.461 17 H 0.074 0.926 18 C -0.212 4.212 19 N -0.573 5.573 20 Si 0.785 3.215 21 H -0.179 1.179 22 H -0.199 1.199 23 H -0.158 1.158 24 N -0.157 5.157 25 C -0.090 4.090 26 C -0.313 4.313 27 C -0.149 4.149 28 N -0.168 5.168 29 H 0.105 0.895 30 H 0.080 0.920 31 H 0.102 0.898 32 H 0.125 0.875 33 H 0.146 0.854 34 H 0.097 0.903 35 H 0.103 0.897 36 H 0.106 0.894 37 H 0.119 0.881 38 H 0.085 0.915 39 H 0.040 0.960 40 H 0.107 0.893 41 H 0.162 0.838 42 H 0.087 0.913 43 H 0.136 0.864 44 H 0.225 0.775 45 H 0.089 0.911 46 H 0.219 0.781 47 H 0.186 0.814 48 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 1.273 -24.115 28.461 37.326 hybrid contribution 0.249 0.928 0.764 1.228 sum 1.521 -23.187 29.226 37.337 Atomic orbital electron populations 1.22234 0.91266 1.04294 1.04041 1.20843 0.95881 0.95798 0.80134 0.90080 1.22007 1.04271 1.01258 0.90231 1.20734 0.78657 0.85108 0.85162 1.90716 1.41737 1.26124 1.86700 1.47878 1.55537 1.25576 1.05131 1.22155 0.96422 0.84208 1.04605 1.21275 0.96934 0.94764 0.87218 1.22268 0.99863 0.95824 0.89584 1.60027 1.05215 1.29054 1.36861 1.21616 0.97129 0.94363 0.93819 1.20905 0.85309 0.82220 0.87954 1.90542 1.25776 1.68919 1.64492 1.42023 1.20243 1.34271 1.26605 1.19028 1.05733 1.16766 1.04534 0.92580 1.26109 1.03310 0.95246 0.96558 1.69801 1.40041 1.24448 1.22996 0.85365 0.77186 0.78885 0.80086 1.17906 1.19947 1.15772 1.48966 1.19328 1.24885 1.22548 1.23098 1.00416 0.90436 0.95054 1.21880 0.98752 1.06905 1.03771 1.24406 1.00169 0.93400 0.96934 1.77371 1.04647 1.25488 1.09248 0.89468 0.91992 0.89774 0.87480 0.85371 0.90348 0.89687 0.89439 0.88056 0.91531 0.96042 0.89293 0.83788 0.91270 0.86377 0.77479 0.91082 0.78083 0.81420 0.78162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.03 8.57 71.98 0.62 -1.42 16 2 C 0.18 2.66 3.05 44.99 0.14 2.79 16 3 H 0.08 1.70 7.95 -2.39 -0.02 1.68 16 4 C -0.14 -1.53 4.05 29.85 0.12 -1.41 16 5 C 0.51 8.91 7.39 87.66 0.65 9.56 16 6 O -0.57 -14.68 13.55 -3.03 -0.04 -14.72 16 7 N -0.61 -8.80 2.87 -846.75 -2.43 -11.23 16 8 C 0.07 0.43 10.24 127.77 1.31 1.74 16 9 C 0.12 2.32 5.67 86.38 0.49 2.81 16 10 C 0.05 1.21 6.01 86.30 0.52 1.72 16 11 N -0.68 -20.40 6.12 -517.93 -3.17 -23.57 16 12 C 0.06 2.00 6.17 85.55 0.53 2.53 16 13 C 0.45 20.67 7.82 87.65 0.69 21.35 16 14 O -0.61 -34.51 15.78 -3.06 -0.05 -34.56 16 15 N -0.59 -28.33 5.09 -306.99 -1.56 -29.89 16 16 C -0.33 -19.70 10.16 84.04 0.85 -18.84 16 17 H 0.06 3.96 7.39 -2.91 -0.02 3.94 16 18 C -0.01 -0.75 5.50 84.93 0.47 -0.28 16 19 N -0.93 -56.60 13.96 21.66 0.30 -56.30 16 20 Si 0.96 39.21 27.74 68.60 1.90 41.11 16 21 H -0.25 -9.74 7.11 99.48 0.71 -9.04 16 22 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 23 H -0.23 -8.11 6.52 99.48 0.65 -7.46 16 24 N -0.37 -5.88 3.53 -327.49 -1.16 -7.03 16 25 C 0.06 0.59 10.59 83.54 0.88 1.48 16 26 C -0.28 -3.12 10.80 21.99 0.24 -2.88 16 27 C 0.04 0.53 12.03 85.24 1.03 1.55 16 28 N -0.35 -6.97 12.58 -57.03 -0.72 -7.69 16 29 H 0.09 0.61 7.15 -2.39 -0.02 0.59 16 30 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.08 1.45 5.95 -2.39 -0.01 1.43 16 32 H 0.11 1.15 7.40 -2.39 -0.02 1.13 16 33 H 0.13 0.70 8.11 -2.39 -0.02 0.68 16 34 H 0.08 0.28 8.14 -2.39 -0.02 0.26 16 35 H 0.08 0.50 8.07 -2.39 -0.02 0.48 16 36 H 0.09 0.31 6.44 -2.39 -0.02 0.29 16 37 H 0.10 1.73 8.07 -2.39 -0.02 1.71 16 38 H 0.07 1.56 7.42 -2.38 -0.02 1.54 16 39 H 0.02 0.53 8.14 -2.39 -0.02 0.51 16 40 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.34 11.40 8.43 -89.70 -0.76 10.64 16 42 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.12 3.07 8.14 -2.39 -0.02 3.05 16 44 H 0.39 15.51 5.76 -92.71 -0.53 14.98 16 45 H 0.28 15.48 8.31 -92.71 -0.77 14.71 16 46 H 0.20 0.66 7.26 -2.91 -0.02 0.64 16 47 H 0.17 0.98 8.06 -2.91 -0.02 0.95 16 48 H 0.20 1.72 8.06 -2.91 -0.02 1.69 16 Total: -1.00 -86.02 398.68 1.23 -84.78 By element: Atomic # 1 Polarization: 38.75 SS G_CDS: -0.36 Total: 38.39 kcal Atomic # 6 Polarization: 12.19 SS G_CDS: 8.52 Total: 20.71 kcal Atomic # 7 Polarization: -126.98 SS G_CDS: -8.74 Total: -135.71 kcal Atomic # 8 Polarization: -49.19 SS G_CDS: -0.09 Total: -49.28 kcal Atomic # 14 Polarization: 39.21 SS G_CDS: 1.90 Total: 41.11 kcal Total: -86.02 1.23 -84.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317652000.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.493 kcal (2) G-P(sol) polarization free energy of solvation -86.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds