Wall clock time and date at job start Tue Mar 31 2020 19:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46955 * 2 1 4 4 C 1.52997 * 109.47127 * 119.99989 * 2 1 3 5 5 C 1.50698 * 109.46933 * 294.99806 * 4 2 1 6 6 O 1.21278 * 120.00153 * 359.97438 * 5 4 2 7 7 N 1.34777 * 119.99931 * 180.02562 * 5 4 2 8 8 C 1.46499 * 119.99946 * 359.97438 * 7 5 4 9 9 C 1.46500 * 120.00168 * 179.97438 * 7 5 4 10 10 C 1.53005 * 109.47207 * 90.00049 * 9 7 5 11 11 N 1.46896 * 109.47083 * 180.02562 * 10 9 7 12 12 C 1.46906 * 110.99960 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.47286 * 179.97438 * 12 11 10 14 14 O 1.21295 * 119.99647 * 0.02562 * 13 12 11 15 15 N 1.34774 * 119.99932 * 179.97438 * 13 12 11 16 16 C 1.37096 * 119.99671 * 179.97438 * 15 13 12 17 17 H 1.08001 * 120.00317 * 0.02562 * 16 15 13 18 18 C 1.38956 * 119.99835 * 180.02562 * 16 15 13 19 19 N 1.31410 * 119.99878 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 119.99834 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47050 * 90.00461 * 20 18 16 22 22 H 1.48501 * 109.46923 * 209.99923 * 20 18 16 23 23 H 1.48491 * 109.47479 * 330.00291 * 20 18 16 24 24 N 1.46500 * 109.46998 * 239.99774 * 2 1 3 25 25 C 1.34954 * 126.03720 * 325.00090 * 24 2 1 26 26 C 1.35314 * 107.74683 * 179.97438 * 25 24 2 27 27 C 1.39869 * 107.92006 * 0.02562 * 26 25 24 28 28 N 1.30843 * 108.20314 * 359.74045 * 27 26 25 29 29 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46998 * 299.99880 * 1 2 3 31 31 H 1.09000 * 109.47050 * 60.00171 * 1 2 3 32 32 H 1.09006 * 109.47500 * 54.99635 * 4 2 1 33 33 H 1.09000 * 109.47325 * 174.99723 * 4 2 1 34 34 H 1.08999 * 109.46917 * 90.00350 * 8 7 5 35 35 H 1.09004 * 109.47122 * 210.00149 * 8 7 5 36 36 H 1.08993 * 109.47629 * 330.00122 * 8 7 5 37 37 H 1.09002 * 109.47350 * 209.99551 * 9 7 5 38 38 H 1.08998 * 109.47180 * 329.99882 * 9 7 5 39 39 H 1.09002 * 109.46559 * 299.99987 * 10 9 7 40 40 H 1.08998 * 109.47188 * 59.99837 * 10 9 7 41 41 H 1.00903 * 111.00303 * 56.04897 * 11 10 9 42 42 H 1.09003 * 109.46926 * 299.99773 * 12 11 10 43 43 H 1.08999 * 109.46744 * 59.99828 * 12 11 10 44 44 H 0.97001 * 120.00129 * 0.02562 * 15 13 12 45 45 H 0.96997 * 120.00129 * 179.97438 * 19 18 16 46 46 H 1.07998 * 126.12536 * 359.95681 * 25 24 2 47 47 H 1.07999 * 126.03749 * 179.97438 * 26 25 24 48 48 H 1.07994 * 125.89991 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6414 0.0571 2.4765 6 8 1.0118 1.0875 2.3632 7 7 1.9854 -0.3913 3.7001 8 6 2.7464 -1.6356 3.8370 9 6 1.5984 0.3656 4.8932 10 6 0.2310 -0.1166 5.3818 11 7 -0.1573 0.6428 6.5778 12 6 -1.4686 0.2062 7.0759 13 6 -1.8323 1.0053 8.3007 14 8 -1.0739 1.8553 8.7174 15 7 -3.0006 0.7762 8.9324 16 6 -3.3311 1.5029 10.0470 17 1 -2.6555 2.2591 10.4186 18 6 -4.5354 1.2663 10.6986 19 7 -5.3572 0.3458 10.2468 20 14 -4.9860 2.2569 12.2168 21 1 -5.7313 3.4752 11.8097 22 1 -5.8372 1.4319 13.1114 23 1 -3.7483 2.6510 12.9362 24 7 2.0184 -0.6907 -1.1962 25 6 1.4402 -1.7560 -1.7895 26 6 2.1961 -2.0924 -2.8602 27 6 3.2734 -1.2026 -2.9231 28 7 3.1650 -0.3587 -1.9291 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6054 -1.7198 1.2952 33 1 3.1264 -0.7995 1.2056 34 1 3.8132 -1.4129 3.8188 35 1 2.4914 -2.1154 4.7820 36 1 2.5007 -2.3044 3.0121 37 1 2.3395 0.2116 5.6775 38 1 1.5434 1.4264 4.6485 39 1 -0.5101 0.0375 4.5975 40 1 0.2860 -1.1774 5.6265 41 1 -0.1529 1.6348 6.3935 42 1 -2.2212 0.3625 6.3030 43 1 -1.4257 -0.8523 7.3325 44 1 -3.6072 0.0967 8.5989 45 1 -6.1977 0.1804 10.7018 46 1 0.5363 -2.2515 -1.4672 47 1 2.0022 -2.9050 -3.5447 48 1 4.0566 -1.2081 -3.6666 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317652006.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:41 Heat of formation + Delta-G solvation = 14.811637 kcal Electronic energy + Delta-G solvation = -28079.118011 eV Core-core repulsion = 23978.287831 eV Total energy + Delta-G solvation = -4100.830181 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.60496 -40.38025 -38.31078 -36.80461 -35.60005 -35.07074 -33.83117 -31.28992 -31.00411 -30.33701 -29.77718 -28.29963 -27.14785 -25.82894 -24.23120 -23.50649 -22.16748 -21.40588 -20.41908 -19.53129 -19.14943 -18.08142 -17.87749 -16.87254 -16.74234 -16.37135 -15.89511 -15.55274 -15.32126 -15.02715 -14.65531 -14.38496 -14.24416 -13.98127 -13.74771 -13.61034 -13.54377 -13.31628 -13.28051 -13.12742 -13.00089 -12.75913 -12.38606 -12.22701 -11.98401 -11.90867 -11.64391 -11.53754 -11.50962 -11.15739 -11.00983 -11.00094 -10.39609 -10.22702 -10.18851 -9.77924 -9.51480 -9.07442 -8.96586 -8.47784 -8.10844 -7.96784 -6.42268 -3.83091 1.53987 2.00561 2.21105 2.52045 2.66468 3.17731 3.26385 3.32537 3.90067 3.97767 4.09627 4.14481 4.18346 4.40118 4.47217 4.55437 4.64280 4.74004 4.89235 4.91264 4.96247 4.96757 5.15447 5.17118 5.24401 5.25946 5.28258 5.33746 5.35630 5.44468 5.51684 5.66910 5.69108 5.76245 5.81185 5.84871 5.95975 6.12685 6.26218 6.30688 6.66666 6.95979 7.14280 7.38013 7.54813 7.59932 7.76361 8.05677 8.60579 9.17284 9.53524 10.04937 10.75484 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.027621 B = 0.001584 C = 0.001545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.472843 B =17675.182872 C =18113.700439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.175 3.825 3 H 0.112 0.888 4 C -0.152 4.152 5 C 0.519 3.481 6 O -0.532 6.532 7 N -0.612 5.612 8 C 0.074 3.926 9 C 0.116 3.884 10 C 0.047 3.953 11 N -0.667 5.667 12 C 0.053 3.947 13 C 0.441 3.559 14 O -0.583 6.583 15 N -0.563 5.563 16 C -0.300 4.300 17 H 0.103 0.897 18 C 0.022 3.978 19 N -0.902 5.902 20 Si 0.931 3.069 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.269 1.269 24 N -0.367 5.367 25 C 0.055 3.945 26 C -0.277 4.277 27 C 0.042 3.958 28 N -0.298 5.298 29 H 0.060 0.940 30 H 0.103 0.897 31 H 0.066 0.934 32 H 0.100 0.900 33 H 0.102 0.898 34 H 0.060 0.940 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.030 0.970 40 H 0.070 0.930 41 H 0.351 0.649 42 H 0.044 0.956 43 H 0.085 0.915 44 H 0.392 0.608 45 H 0.271 0.729 46 H 0.172 0.828 47 H 0.146 0.854 48 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.458 -10.290 -24.496 30.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.073 3.927 3 H 0.130 0.870 4 C -0.193 4.193 5 C 0.306 3.694 6 O -0.408 6.408 7 N -0.345 5.345 8 C -0.069 4.069 9 C -0.007 4.007 10 C -0.084 4.084 11 N -0.300 5.300 12 C -0.080 4.080 13 C 0.226 3.774 14 O -0.467 6.467 15 N -0.200 5.200 16 C -0.429 4.429 17 H 0.121 0.879 18 C -0.179 4.179 19 N -0.543 5.543 20 Si 0.758 3.242 21 H -0.204 1.204 22 H -0.209 1.209 23 H -0.194 1.194 24 N -0.149 5.149 25 C -0.091 4.091 26 C -0.307 4.307 27 C -0.144 4.144 28 N -0.118 5.118 29 H 0.079 0.921 30 H 0.121 0.879 31 H 0.085 0.915 32 H 0.118 0.882 33 H 0.120 0.880 34 H 0.079 0.921 35 H 0.098 0.902 36 H 0.089 0.911 37 H 0.108 0.892 38 H 0.105 0.895 39 H 0.049 0.951 40 H 0.088 0.912 41 H 0.171 0.829 42 H 0.062 0.938 43 H 0.104 0.896 44 H 0.225 0.775 45 H 0.081 0.919 46 H 0.189 0.811 47 H 0.164 0.836 48 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 15.269 -8.545 -23.038 28.930 hybrid contribution -1.632 -0.665 -0.520 1.838 sum 13.637 -9.210 -23.559 28.737 Atomic orbital electron populations 1.22336 0.91986 1.03079 1.05296 1.20953 0.95389 0.96968 0.79388 0.87034 1.22103 1.04067 1.00685 0.92434 1.20260 0.79288 0.85575 0.84264 1.90722 1.39640 1.24330 1.86157 1.47808 1.55347 1.25281 1.06069 1.21889 0.95992 0.85464 1.03546 1.21467 0.96593 0.96907 0.85706 1.22244 0.95804 0.98900 0.91448 1.60022 1.29253 1.09887 1.30804 1.21655 0.89715 1.00246 0.96388 1.19786 0.83555 0.87263 0.86784 1.90525 1.51200 1.36650 1.68319 1.41857 1.16929 1.35228 1.25992 1.19719 1.03175 1.16900 1.03153 0.87884 1.25265 0.95800 0.97248 0.99618 1.69611 1.11052 1.32380 1.41290 0.85847 0.78600 0.79071 0.80709 1.20419 1.20925 1.19390 1.48960 1.19593 1.23989 1.22386 1.22534 0.99837 0.91282 0.95438 1.21526 0.99280 1.06630 1.03219 1.23907 0.99323 0.93826 0.97316 1.77404 1.03083 1.23616 1.07729 0.92061 0.87871 0.91460 0.88177 0.87958 0.92141 0.90217 0.91082 0.89163 0.89534 0.95150 0.91160 0.82922 0.93825 0.89648 0.77465 0.91879 0.81132 0.83615 0.80133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.26 8.58 37.16 0.32 -0.94 16 2 C 0.18 1.43 3.05 -67.93 -0.21 1.23 16 3 H 0.11 1.11 7.95 -51.93 -0.41 0.70 16 4 C -0.15 -1.05 4.05 -27.89 -0.11 -1.16 16 5 C 0.52 4.98 7.39 -10.99 -0.08 4.90 16 6 O -0.53 -6.91 13.55 5.56 0.08 -6.84 16 7 N -0.61 -5.29 2.87 -181.57 -0.52 -5.81 16 8 C 0.07 0.39 10.24 59.85 0.61 1.00 16 9 C 0.12 1.24 5.67 -4.04 -0.02 1.21 16 10 C 0.05 0.58 6.01 -3.82 -0.02 0.55 16 11 N -0.67 -10.77 6.13 -115.05 -0.70 -11.47 16 12 C 0.05 0.94 6.17 -4.97 -0.03 0.91 16 13 C 0.44 10.49 7.82 -10.99 -0.09 10.41 16 14 O -0.58 -15.95 15.78 5.54 0.09 -15.86 16 15 N -0.56 -14.37 5.29 -10.96 -0.06 -14.43 16 16 C -0.30 -8.42 9.68 -14.93 -0.14 -8.56 16 17 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 18 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 19 N -0.90 -24.57 13.05 55.50 0.72 -23.85 16 20 Si 0.93 21.10 29.55 -169.99 -5.02 16.08 16 21 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 22 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 23 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 24 N -0.37 -3.21 3.53 -54.86 -0.19 -3.40 16 25 C 0.06 0.39 10.59 -17.22 -0.18 0.20 16 26 C -0.28 -1.93 10.80 -40.01 -0.43 -2.36 16 27 C 0.04 0.34 12.03 -17.36 -0.21 0.13 16 28 N -0.30 -3.09 12.58 30.62 0.39 -2.71 16 29 H 0.06 0.35 7.16 -51.93 -0.37 -0.03 16 30 H 0.10 0.97 5.95 -51.93 -0.31 0.66 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.10 0.51 7.40 -51.93 -0.38 0.12 16 33 H 0.10 0.68 8.11 -51.93 -0.42 0.25 16 34 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.08 0.39 8.07 -51.93 -0.42 -0.03 16 36 H 0.07 0.26 6.44 -51.93 -0.33 -0.08 16 37 H 0.09 0.90 8.07 -51.93 -0.42 0.48 16 38 H 0.09 1.06 7.42 -51.93 -0.39 0.68 16 39 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.35 5.98 8.43 -39.29 -0.33 5.65 16 42 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.09 1.39 8.14 -51.93 -0.42 0.96 16 44 H 0.39 9.54 7.90 -40.82 -0.32 9.22 16 45 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 46 H 0.17 0.71 7.26 -52.49 -0.38 0.33 16 47 H 0.15 0.70 8.06 -52.49 -0.42 0.27 16 48 H 0.18 0.90 8.06 -52.49 -0.42 0.48 16 LS Contribution 401.81 15.07 6.06 6.06 Total: -1.00 -34.82 401.81 -7.26 -42.08 By element: Atomic # 1 Polarization: 19.52 SS G_CDS: -7.39 Total: 12.13 kcal Atomic # 6 Polarization: 8.72 SS G_CDS: -0.70 Total: 8.02 kcal Atomic # 7 Polarization: -61.30 SS G_CDS: -0.37 Total: -61.67 kcal Atomic # 8 Polarization: -22.86 SS G_CDS: 0.16 Total: -22.70 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.82 -7.26 -42.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317652006.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.890 kcal (2) G-P(sol) polarization free energy of solvation -34.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds