Wall clock time and date at job start Tue Mar 31 2020 19:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46955 * 2 1 4 4 C 1.52997 * 109.47127 * 119.99989 * 2 1 3 5 5 C 1.50698 * 109.46933 * 294.99806 * 4 2 1 6 6 O 1.21278 * 120.00153 * 359.97438 * 5 4 2 7 7 N 1.34777 * 119.99931 * 180.02562 * 5 4 2 8 8 C 1.46499 * 119.99946 * 359.97438 * 7 5 4 9 9 C 1.46500 * 120.00168 * 179.97438 * 7 5 4 10 10 C 1.53005 * 109.47207 * 90.00049 * 9 7 5 11 11 N 1.46896 * 109.47083 * 180.02562 * 10 9 7 12 12 C 1.46906 * 110.99960 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.47286 * 179.97438 * 12 11 10 14 14 O 1.21295 * 119.99647 * 0.02562 * 13 12 11 15 15 N 1.34774 * 119.99932 * 179.97438 * 13 12 11 16 16 C 1.37096 * 119.99671 * 179.97438 * 15 13 12 17 17 H 1.08001 * 120.00317 * 0.02562 * 16 15 13 18 18 C 1.38956 * 119.99835 * 180.02562 * 16 15 13 19 19 N 1.31410 * 119.99878 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 119.99834 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47050 * 90.00461 * 20 18 16 22 22 H 1.48501 * 109.46923 * 209.99923 * 20 18 16 23 23 H 1.48491 * 109.47479 * 330.00291 * 20 18 16 24 24 N 1.46500 * 109.46998 * 239.99774 * 2 1 3 25 25 C 1.34954 * 126.03720 * 325.00090 * 24 2 1 26 26 C 1.35314 * 107.74683 * 179.97438 * 25 24 2 27 27 C 1.39869 * 107.92006 * 0.02562 * 26 25 24 28 28 N 1.30843 * 108.20314 * 359.74045 * 27 26 25 29 29 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46998 * 299.99880 * 1 2 3 31 31 H 1.09000 * 109.47050 * 60.00171 * 1 2 3 32 32 H 1.09006 * 109.47500 * 54.99635 * 4 2 1 33 33 H 1.09000 * 109.47325 * 174.99723 * 4 2 1 34 34 H 1.08999 * 109.46917 * 90.00350 * 8 7 5 35 35 H 1.09004 * 109.47122 * 210.00149 * 8 7 5 36 36 H 1.08993 * 109.47629 * 330.00122 * 8 7 5 37 37 H 1.09002 * 109.47350 * 209.99551 * 9 7 5 38 38 H 1.08998 * 109.47180 * 329.99882 * 9 7 5 39 39 H 1.09002 * 109.46559 * 299.99987 * 10 9 7 40 40 H 1.08998 * 109.47188 * 59.99837 * 10 9 7 41 41 H 1.00903 * 111.00303 * 56.04897 * 11 10 9 42 42 H 1.09003 * 109.46926 * 299.99773 * 12 11 10 43 43 H 1.08999 * 109.46744 * 59.99828 * 12 11 10 44 44 H 0.97001 * 120.00129 * 0.02562 * 15 13 12 45 45 H 0.96997 * 120.00129 * 179.97438 * 19 18 16 46 46 H 1.07998 * 126.12536 * 359.95681 * 25 24 2 47 47 H 1.07999 * 126.03749 * 179.97438 * 26 25 24 48 48 H 1.07994 * 125.89991 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6414 0.0571 2.4765 6 8 1.0118 1.0875 2.3632 7 7 1.9854 -0.3913 3.7001 8 6 2.7464 -1.6356 3.8370 9 6 1.5984 0.3656 4.8932 10 6 0.2310 -0.1166 5.3818 11 7 -0.1573 0.6428 6.5778 12 6 -1.4686 0.2062 7.0759 13 6 -1.8323 1.0053 8.3007 14 8 -1.0739 1.8553 8.7174 15 7 -3.0006 0.7762 8.9324 16 6 -3.3311 1.5029 10.0470 17 1 -2.6555 2.2591 10.4186 18 6 -4.5354 1.2663 10.6986 19 7 -5.3572 0.3458 10.2468 20 14 -4.9860 2.2569 12.2168 21 1 -5.7313 3.4752 11.8097 22 1 -5.8372 1.4319 13.1114 23 1 -3.7483 2.6510 12.9362 24 7 2.0184 -0.6907 -1.1962 25 6 1.4402 -1.7560 -1.7895 26 6 2.1961 -2.0924 -2.8602 27 6 3.2734 -1.2026 -2.9231 28 7 3.1650 -0.3587 -1.9291 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6054 -1.7198 1.2952 33 1 3.1264 -0.7995 1.2056 34 1 3.8132 -1.4129 3.8188 35 1 2.4914 -2.1154 4.7820 36 1 2.5007 -2.3044 3.0121 37 1 2.3395 0.2116 5.6775 38 1 1.5434 1.4264 4.6485 39 1 -0.5101 0.0375 4.5975 40 1 0.2860 -1.1774 5.6265 41 1 -0.1529 1.6348 6.3935 42 1 -2.2212 0.3625 6.3030 43 1 -1.4257 -0.8523 7.3325 44 1 -3.6072 0.0967 8.5989 45 1 -6.1977 0.1804 10.7018 46 1 0.5363 -2.2515 -1.4672 47 1 2.0022 -2.9050 -3.5447 48 1 4.0566 -1.2081 -3.6666 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317652006.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:40 Heat of formation + Delta-G solvation = -11.118089 kcal Electronic energy + Delta-G solvation = -28080.242409 eV Core-core repulsion = 23978.287831 eV Total energy + Delta-G solvation = -4101.954578 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.17767 -41.11550 -40.16600 -37.73998 -36.40028 -36.18856 -35.72399 -33.29411 -31.82234 -30.99597 -30.52676 -29.03385 -28.08037 -27.08945 -25.65754 -24.36486 -23.13520 -21.95899 -21.23649 -20.93149 -20.11660 -19.88137 -18.69217 -17.93584 -17.50239 -17.44044 -17.06474 -16.69528 -16.46840 -16.10759 -15.79465 -15.67742 -15.30188 -15.18936 -14.87580 -14.65621 -14.38594 -14.11346 -13.94678 -13.88436 -13.82255 -13.53733 -13.49673 -13.39108 -13.22001 -12.98343 -12.82953 -12.65221 -12.50364 -12.42846 -12.22607 -12.12274 -12.08208 -11.58582 -11.52097 -10.96584 -10.40733 -10.39045 -10.03232 -9.76822 -9.51148 -9.43524 -8.47897 -5.96877 0.99325 1.37602 1.40023 1.41797 1.49585 1.54569 1.97526 2.00049 2.02944 2.29350 2.96697 3.19104 3.37683 3.49091 3.56146 3.63772 3.98477 3.99656 4.04659 4.12551 4.14391 4.26669 4.29847 4.39764 4.45291 4.46178 4.48718 4.56364 4.67489 4.71195 4.76176 4.80865 4.82601 4.93783 4.94611 4.97441 5.16882 5.20656 5.39238 5.40863 5.78621 5.82688 6.04936 6.15388 6.26635 6.29724 6.58267 6.81666 7.04686 7.10976 7.53959 8.09232 8.69452 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.027621 B = 0.001584 C = 0.001545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.472843 B =17675.182872 C =18113.700439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.177 3.823 3 H 0.083 0.917 4 C -0.137 4.137 5 C 0.515 3.485 6 O -0.573 6.573 7 N -0.609 5.609 8 C 0.068 3.932 9 C 0.122 3.878 10 C 0.056 3.944 11 N -0.677 5.677 12 C 0.067 3.933 13 C 0.437 3.563 14 O -0.623 6.623 15 N -0.572 5.572 16 C -0.337 4.337 17 H 0.079 0.921 18 C -0.012 4.012 19 N -0.919 5.919 20 Si 0.994 3.006 21 H -0.271 1.271 22 H -0.269 1.269 23 H -0.273 1.273 24 N -0.374 5.374 25 C 0.055 3.945 26 C -0.284 4.284 27 C 0.037 3.963 28 N -0.345 5.345 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.061 0.939 32 H 0.128 0.872 33 H 0.108 0.892 34 H 0.070 0.930 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.099 0.901 38 H 0.064 0.936 39 H 0.024 0.976 40 H 0.088 0.912 41 H 0.343 0.657 42 H 0.062 0.938 43 H 0.109 0.891 44 H 0.397 0.603 45 H 0.278 0.722 46 H 0.201 0.799 47 H 0.168 0.832 48 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.376 -12.737 -25.259 31.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.075 3.925 3 H 0.101 0.899 4 C -0.178 4.178 5 C 0.303 3.697 6 O -0.453 6.453 7 N -0.341 5.341 8 C -0.074 4.074 9 C -0.002 4.002 10 C -0.074 4.074 11 N -0.310 5.310 12 C -0.065 4.065 13 C 0.224 3.776 14 O -0.510 6.510 15 N -0.209 5.209 16 C -0.466 4.466 17 H 0.097 0.903 18 C -0.212 4.212 19 N -0.560 5.560 20 Si 0.817 3.183 21 H -0.197 1.197 22 H -0.194 1.194 23 H -0.198 1.198 24 N -0.157 5.157 25 C -0.091 4.091 26 C -0.313 4.313 27 C -0.148 4.148 28 N -0.166 5.166 29 H 0.104 0.896 30 H 0.101 0.899 31 H 0.080 0.920 32 H 0.146 0.854 33 H 0.126 0.874 34 H 0.088 0.912 35 H 0.105 0.895 36 H 0.111 0.889 37 H 0.117 0.883 38 H 0.082 0.918 39 H 0.042 0.958 40 H 0.106 0.894 41 H 0.161 0.839 42 H 0.080 0.920 43 H 0.127 0.873 44 H 0.231 0.769 45 H 0.088 0.912 46 H 0.217 0.783 47 H 0.186 0.814 48 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 15.201 -11.049 -23.826 30.346 hybrid contribution -1.559 0.068 -0.358 1.601 sum 13.643 -10.981 -24.184 29.859 Atomic orbital electron populations 1.22237 0.91457 1.04224 1.03995 1.20827 0.95709 0.95884 0.80128 0.89879 1.22008 1.04404 1.01147 0.90209 1.20743 0.78576 0.85202 0.85164 1.90714 1.41600 1.26210 1.86768 1.47876 1.55114 1.26088 1.05051 1.22153 0.96128 0.84165 1.04940 1.21265 0.96099 0.96053 0.86749 1.22250 0.96241 0.99223 0.89665 1.60042 1.28244 1.09779 1.32918 1.21518 0.91053 1.00103 0.93849 1.20842 0.82309 0.86733 0.87704 1.90493 1.52207 1.38479 1.69797 1.41918 1.17737 1.35361 1.25873 1.19689 1.03924 1.17933 1.05067 0.90307 1.26044 0.95111 0.97977 1.02024 1.69667 1.11298 1.32832 1.42210 0.84916 0.78168 0.77936 0.77243 1.19697 1.19413 1.19774 1.48955 1.19611 1.24619 1.22529 1.23090 1.00444 0.90482 0.95096 1.21877 0.98798 1.06987 1.03606 1.24410 1.00092 0.93339 0.96977 1.77363 1.04640 1.25392 1.09252 0.89612 0.89917 0.91951 0.85394 0.87403 0.91150 0.89472 0.88851 0.88278 0.91770 0.95798 0.89352 0.83888 0.92033 0.87312 0.76930 0.91248 0.78252 0.81438 0.78051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.29 8.58 71.98 0.62 -1.68 16 2 C 0.18 2.83 3.05 44.99 0.14 2.97 16 3 H 0.08 1.78 7.95 -2.39 -0.02 1.76 16 4 C -0.14 -1.67 4.05 29.85 0.12 -1.55 16 5 C 0.51 9.53 7.39 87.66 0.65 10.17 16 6 O -0.57 -15.38 13.55 -3.02 -0.04 -15.42 16 7 N -0.61 -9.63 2.87 -846.76 -2.43 -12.06 16 8 C 0.07 0.52 10.24 127.77 1.31 1.83 16 9 C 0.12 2.52 5.67 86.38 0.49 3.00 16 10 C 0.06 1.31 6.01 86.31 0.52 1.82 16 11 N -0.68 -21.47 6.13 -517.91 -3.17 -24.65 16 12 C 0.07 2.32 6.17 85.56 0.53 2.85 16 13 C 0.44 21.01 7.82 87.66 0.69 21.69 16 14 O -0.62 -34.99 15.78 -3.08 -0.05 -35.04 16 15 N -0.57 -29.56 5.29 -306.98 -1.62 -31.18 16 16 C -0.34 -19.28 9.68 84.04 0.81 -18.46 16 17 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 18 C -0.01 -0.63 5.50 84.93 0.47 -0.16 16 19 N -0.92 -49.55 13.05 21.66 0.28 -49.27 16 20 Si 0.99 43.02 29.55 68.60 2.03 45.05 16 21 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 22 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 23 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 24 N -0.37 -6.15 3.53 -327.49 -1.15 -7.30 16 25 C 0.05 0.63 10.59 83.54 0.88 1.52 16 26 C -0.28 -3.31 10.80 21.99 0.24 -3.07 16 27 C 0.04 0.55 12.03 85.24 1.02 1.57 16 28 N -0.35 -7.05 12.58 -57.02 -0.72 -7.77 16 29 H 0.09 0.76 7.16 -2.39 -0.02 0.74 16 30 H 0.08 1.58 5.95 -2.39 -0.01 1.57 16 31 H 0.06 0.92 8.14 -2.39 -0.02 0.91 16 32 H 0.13 0.84 7.40 -2.38 -0.02 0.83 16 33 H 0.11 1.24 8.11 -2.39 -0.02 1.22 16 34 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 35 H 0.09 0.58 8.07 -2.38 -0.02 0.56 16 36 H 0.09 0.32 6.44 -2.39 -0.02 0.30 16 37 H 0.10 1.87 8.07 -2.39 -0.02 1.85 16 38 H 0.06 1.63 7.42 -2.39 -0.02 1.61 16 39 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.34 11.87 8.43 -89.69 -0.76 11.11 16 42 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 43 H 0.11 3.28 8.14 -2.39 -0.02 3.26 16 44 H 0.40 19.38 7.90 -92.71 -0.73 18.64 16 45 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 46 H 0.20 0.94 7.26 -2.91 -0.02 0.91 16 47 H 0.17 1.10 8.06 -2.91 -0.02 1.08 16 48 H 0.20 1.74 8.06 -2.91 -0.02 1.72 16 Total: -1.00 -77.67 401.81 1.10 -76.57 By element: Atomic # 1 Polarization: 39.05 SS G_CDS: -0.50 Total: 38.55 kcal Atomic # 6 Polarization: 14.04 SS G_CDS: 8.48 Total: 22.52 kcal Atomic # 7 Polarization: -123.40 SS G_CDS: -8.82 Total: -132.22 kcal Atomic # 8 Polarization: -50.37 SS G_CDS: -0.09 Total: -50.46 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Total: -77.67 1.10 -76.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317652006.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.450 kcal (2) G-P(sol) polarization free energy of solvation -77.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds