Wall clock time and date at job start Tue Mar 31 2020 20:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.46898 * 2 1 4 4 C 1.53004 * 109.47522 * 240.00305 * 2 1 3 5 5 N 1.46895 * 109.47035 * 184.99817 * 4 2 1 6 6 C 1.46906 * 110.99789 * 179.97438 * 5 4 2 7 7 C 1.50703 * 109.47109 * 179.97438 * 6 5 4 8 8 O 1.21296 * 119.99996 * 0.02562 * 7 6 5 9 9 N 1.34776 * 119.99978 * 180.02562 * 7 6 5 10 10 C 1.37099 * 119.99848 * 180.02562 * 9 7 6 11 11 H 1.07998 * 120.00405 * 359.97438 * 10 9 7 12 12 C 1.38953 * 119.99358 * 179.97438 * 10 9 7 13 13 N 1.31411 * 120.00464 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99431 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.47204 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.46979 * 120.00140 * 14 12 10 17 17 H 1.48498 * 109.47371 * 240.00040 * 14 12 10 18 18 N 1.46503 * 109.47499 * 119.99933 * 2 1 3 19 19 C 1.46506 * 119.99649 * 60.00148 * 18 2 1 20 20 C 1.34777 * 120.00185 * 240.00699 * 18 2 1 21 21 O 1.21274 * 120.00112 * 359.97438 * 20 18 2 22 22 C 1.50700 * 119.99615 * 179.97438 * 20 18 2 23 23 C 1.52999 * 109.46636 * 179.97438 * 22 20 18 24 24 N 1.46507 * 109.46873 * 179.97438 * 23 22 20 25 25 C 1.34945 * 126.03668 * 125.00150 * 24 23 22 26 26 C 1.35319 * 107.74598 * 179.97438 * 25 24 23 27 27 C 1.39866 * 107.91631 * 0.02562 * 26 25 24 28 28 N 1.30830 * 108.20937 * 359.73665 * 27 26 25 29 29 H 1.08994 * 109.47227 * 60.00484 * 1 2 3 30 30 H 1.09003 * 109.46643 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47549 * 299.99706 * 1 2 3 32 32 H 1.08996 * 109.46863 * 64.99659 * 4 2 1 33 33 H 1.09002 * 109.46661 * 304.99836 * 4 2 1 34 34 H 1.00902 * 111.00273 * 303.95364 * 5 4 2 35 35 H 1.08992 * 109.47459 * 299.99826 * 6 5 4 36 36 H 1.09004 * 109.47040 * 59.99976 * 6 5 4 37 37 H 0.97002 * 119.99767 * 359.97438 * 9 7 6 38 38 H 0.96997 * 119.99770 * 179.97438 * 13 12 10 39 39 H 1.08998 * 109.46574 * 90.00048 * 19 18 2 40 40 H 1.08998 * 109.46996 * 210.00432 * 19 18 2 41 41 H 1.09001 * 109.46821 * 330.00269 * 19 18 2 42 42 H 1.09001 * 109.47030 * 299.99252 * 22 20 18 43 43 H 1.08995 * 109.47333 * 59.99635 * 22 20 18 44 44 H 1.08996 * 109.47397 * 299.99669 * 23 22 20 45 45 H 1.09003 * 109.47527 * 60.00187 * 23 22 20 46 46 H 1.08003 * 126.12658 * 359.97438 * 25 24 23 47 47 H 1.07995 * 126.03961 * 180.02562 * 26 25 24 48 48 H 1.08011 * 125.89511 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 7 3.5041 -0.8265 -1.1904 6 6 4.0304 -1.5157 -2.3762 7 6 5.5318 -1.6041 -2.2807 8 8 6.1068 -1.1391 -1.3192 9 7 6.2356 -2.1997 -3.2637 10 6 7.6015 -2.2806 -3.1766 11 1 8.1135 -1.8666 -2.3205 12 6 8.3270 -2.8952 -4.1899 13 7 7.7040 -3.3993 -5.2313 14 14 10.1880 -3.0047 -4.0715 15 1 10.6422 -2.3666 -2.8098 16 1 10.6015 -4.4310 -4.0812 17 1 10.7998 -2.3042 -5.2292 18 7 2.0184 -0.6906 1.1962 19 6 1.6645 -2.0932 1.4280 20 6 2.7932 -0.0356 2.0834 21 8 3.0864 1.1254 1.8913 22 6 3.2950 -0.7459 3.3141 23 6 4.1455 0.2156 4.1466 24 7 4.6330 -0.4747 5.3433 25 6 5.9223 -0.5862 5.7258 26 6 5.9507 -1.2933 6.8791 27 6 4.6337 -1.6258 7.2126 28 7 3.8425 -1.1311 6.2956 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.7517 -0.1582 -2.1369 33 1 1.6055 -1.7198 -1.2952 34 1 3.9280 0.0827 -1.0823 35 1 3.6097 -2.5197 -2.4295 36 1 3.7558 -0.9586 -3.2720 37 1 5.7757 -2.5718 -4.0324 38 1 8.2105 -3.8280 -5.9387 39 1 2.4159 -2.7376 0.9716 40 1 1.6238 -2.2853 2.5001 41 1 0.6905 -2.3002 0.9846 42 1 2.4470 -1.0881 3.9073 43 1 3.9004 -1.6025 3.0177 44 1 4.9935 0.5575 3.5532 45 1 3.5405 1.0725 4.4430 46 1 6.7782 -0.1833 5.2046 47 1 6.8342 -1.5547 7.4425 48 1 4.3232 -2.1899 8.0797 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319421401.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:56 Heat of formation + Delta-G solvation = -12.434159 kcal Electronic energy + Delta-G solvation = -29024.023147 eV Core-core repulsion = 24922.011500 eV Total energy + Delta-G solvation = -4102.011647 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.04621 -41.07881 -40.13689 -38.05074 -36.18365 -35.57601 -35.27487 -33.30731 -32.82233 -31.26899 -30.28983 -28.97584 -27.78426 -26.70662 -25.79465 -24.53254 -22.44383 -21.97242 -21.39026 -21.06487 -20.04423 -19.82960 -18.73494 -17.95753 -17.63920 -17.16856 -17.06529 -16.56352 -16.45621 -16.09388 -15.82181 -15.39008 -15.29332 -15.09442 -14.89898 -14.80831 -14.22158 -14.16305 -14.04116 -13.75187 -13.61625 -13.54045 -13.46661 -13.20288 -13.08396 -12.95987 -12.86071 -12.77150 -12.56409 -12.42620 -12.37541 -12.13113 -11.76970 -11.58806 -11.53231 -10.88528 -10.39778 -10.37389 -10.03223 -9.58728 -9.51274 -9.31532 -8.48771 -5.97376 0.97522 1.34883 1.40289 1.48821 1.54373 1.63435 1.98127 2.03582 2.12818 2.27603 2.90185 3.18538 3.46245 3.52088 3.58226 3.78987 3.89799 4.07971 4.13368 4.19466 4.25560 4.31140 4.33885 4.35908 4.48620 4.49776 4.54191 4.64610 4.68746 4.71424 4.73947 4.82186 4.84063 4.91570 5.00601 5.08613 5.17817 5.29131 5.39116 5.61863 5.78831 5.87396 6.08292 6.09459 6.30259 6.41189 6.58496 6.78022 7.11111 7.17316 7.54446 8.10226 8.68905 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.008445 B = 0.002839 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3314.904990 B = 9861.214213 C =12594.952617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.136 3.864 3 H 0.075 0.925 4 C 0.051 3.949 5 N -0.676 5.676 6 C 0.067 3.933 7 C 0.437 3.563 8 O -0.624 6.624 9 N -0.573 5.573 10 C -0.332 4.332 11 H 0.076 0.924 12 C -0.012 4.012 13 N -0.920 5.920 14 Si 0.992 3.008 15 H -0.274 1.274 16 H -0.269 1.269 17 H -0.270 1.270 18 N -0.589 5.589 19 C 0.075 3.925 20 C 0.521 3.479 21 O -0.586 6.586 22 C -0.134 4.134 23 C 0.153 3.847 24 N -0.382 5.382 25 C 0.045 3.955 26 C -0.283 4.283 27 C 0.040 3.960 28 N -0.332 5.332 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.057 0.943 32 H 0.053 0.947 33 H 0.092 0.908 34 H 0.336 0.664 35 H 0.107 0.893 36 H 0.064 0.936 37 H 0.396 0.604 38 H 0.278 0.722 39 H 0.051 0.949 40 H 0.081 0.919 41 H 0.096 0.904 42 H 0.116 0.884 43 H 0.095 0.905 44 H 0.100 0.900 45 H 0.087 0.913 46 H 0.192 0.808 47 H 0.168 0.832 48 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.288 1.567 15.414 21.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.032 3.968 3 H 0.093 0.907 4 C -0.078 4.078 5 N -0.308 5.308 6 C -0.065 4.065 7 C 0.224 3.776 8 O -0.510 6.510 9 N -0.211 5.211 10 C -0.462 4.462 11 H 0.094 0.906 12 C -0.212 4.212 13 N -0.561 5.561 14 Si 0.815 3.185 15 H -0.199 1.199 16 H -0.195 1.195 17 H -0.196 1.196 18 N -0.320 5.320 19 C -0.067 4.067 20 C 0.309 3.691 21 O -0.467 6.467 22 C -0.175 4.175 23 C 0.032 3.968 24 N -0.164 5.164 25 C -0.101 4.101 26 C -0.312 4.312 27 C -0.146 4.146 28 N -0.154 5.154 29 H 0.101 0.899 30 H 0.097 0.903 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.110 0.890 34 H 0.153 0.847 35 H 0.125 0.875 36 H 0.082 0.918 37 H 0.230 0.770 38 H 0.087 0.913 39 H 0.069 0.931 40 H 0.100 0.900 41 H 0.114 0.886 42 H 0.134 0.866 43 H 0.113 0.887 44 H 0.119 0.881 45 H 0.105 0.895 46 H 0.209 0.791 47 H 0.185 0.815 48 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -15.972 1.993 15.619 22.429 hybrid contribution 1.751 0.313 -1.059 2.070 sum -14.222 2.306 14.561 20.484 Atomic orbital electron populations 1.22020 0.91775 1.03744 1.03156 1.21156 0.95551 0.96556 0.83559 0.90718 1.22466 0.86788 1.01891 0.96687 1.60034 1.05598 1.25979 1.39151 1.21524 0.90401 1.01596 0.92970 1.20927 0.90639 0.82448 0.83548 1.90501 1.72825 1.53000 1.34663 1.41936 1.06854 1.51729 1.20559 1.19669 0.83066 1.36844 1.06624 0.90560 1.26024 1.04871 0.95795 0.94524 1.69671 1.38204 1.38531 1.09713 0.84893 0.76940 0.78382 0.78262 1.19895 1.19457 1.19568 1.47635 1.49531 1.13181 1.21607 1.21936 1.02026 0.79971 1.02779 1.20523 0.77515 0.86322 0.84713 1.90666 1.59199 1.18837 1.77997 1.21729 1.01987 0.99454 0.94294 1.21346 1.00170 0.93524 0.81787 1.48845 1.04944 1.43005 1.19644 1.23168 0.88447 1.00523 0.97967 1.21866 0.99093 1.09783 1.00482 1.24451 0.92049 0.99174 0.98910 1.77234 1.20560 1.15652 1.01907 0.89931 0.90296 0.92363 0.92845 0.89019 0.84651 0.87525 0.91833 0.76965 0.91272 0.93068 0.90006 0.88557 0.86624 0.88661 0.88125 0.89454 0.79136 0.81453 0.77336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.17 71.98 0.66 -1.32 16 2 C 0.14 2.80 2.88 44.99 0.13 2.93 16 3 H 0.07 1.96 6.90 -2.39 -0.02 1.94 16 4 C 0.05 1.08 4.98 86.31 0.43 1.51 16 5 N -0.68 -21.20 5.85 -517.92 -3.03 -24.22 16 6 C 0.07 2.27 6.17 85.56 0.53 2.79 16 7 C 0.44 20.89 7.82 87.66 0.69 21.58 16 8 O -0.62 -35.14 15.78 -3.08 -0.05 -35.19 16 9 N -0.57 -29.51 5.29 -306.98 -1.62 -31.13 16 10 C -0.33 -19.02 9.68 84.04 0.81 -18.20 16 11 H 0.08 4.69 7.16 -2.91 -0.02 4.67 16 12 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 13 N -0.92 -49.60 13.05 21.66 0.28 -49.32 16 14 Si 0.99 43.08 29.55 68.60 2.03 45.11 16 15 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 16 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 17 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 18 N -0.59 -12.96 2.49 -822.58 -2.04 -15.00 16 19 C 0.08 1.20 9.40 127.77 1.20 2.40 16 20 C 0.52 14.01 7.67 87.66 0.67 14.68 16 21 O -0.59 -19.89 15.31 -3.01 -0.05 -19.93 16 22 C -0.13 -3.03 4.44 29.85 0.13 -2.90 16 23 C 0.15 3.61 5.80 86.38 0.50 4.11 16 24 N -0.38 -9.10 3.68 -348.05 -1.28 -10.38 16 25 C 0.04 0.94 11.45 83.54 0.96 1.89 16 26 C -0.28 -5.29 10.80 21.99 0.24 -5.05 16 27 C 0.04 0.77 12.02 85.24 1.02 1.80 16 28 N -0.33 -8.10 12.42 -57.02 -0.71 -8.81 16 29 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.08 0.78 6.66 -2.39 -0.02 0.77 16 31 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.09 1.64 7.84 -2.39 -0.02 1.62 16 34 H 0.34 12.26 8.43 -89.69 -0.76 11.51 16 35 H 0.11 3.14 8.14 -2.39 -0.02 3.12 16 36 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 37 H 0.40 19.27 7.90 -92.71 -0.73 18.54 16 38 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 39 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.08 1.09 6.44 -2.39 -0.02 1.08 16 41 H 0.10 1.04 6.43 -2.39 -0.02 1.02 16 42 H 0.12 2.28 7.40 -2.39 -0.02 2.26 16 43 H 0.10 2.28 8.11 -2.39 -0.02 2.26 16 44 H 0.10 2.46 8.03 -2.39 -0.02 2.44 16 45 H 0.09 2.08 8.10 -2.39 -0.02 2.06 16 46 H 0.19 3.07 8.06 -2.91 -0.02 3.04 16 47 H 0.17 2.26 8.06 -2.91 -0.02 2.24 16 48 H 0.21 2.51 8.06 -2.91 -0.02 2.48 16 Total: -1.00 -76.92 403.26 1.47 -75.45 By element: Atomic # 1 Polarization: 47.91 SS G_CDS: -0.50 Total: 47.41 kcal Atomic # 6 Polarization: 17.59 SS G_CDS: 8.44 Total: 26.03 kcal Atomic # 7 Polarization: -130.47 SS G_CDS: -8.40 Total: -138.87 kcal Atomic # 8 Polarization: -55.03 SS G_CDS: -0.09 Total: -55.12 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -76.92 1.47 -75.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319421401.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.015 kcal (2) G-P(sol) polarization free energy of solvation -76.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds