Wall clock time and date at job start Tue Mar 31 2020 20:04:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47053 * 2 1 4 4 C 1.53003 * 109.47184 * 119.99975 * 2 1 3 5 5 N 1.46902 * 109.46936 * 174.99898 * 4 2 1 6 6 C 1.46904 * 110.99711 * 180.02562 * 5 4 2 7 7 C 1.50699 * 109.46947 * 180.02562 * 6 5 4 8 8 O 1.21292 * 120.00217 * 359.97438 * 7 6 5 9 9 N 1.34778 * 119.99744 * 180.02562 * 7 6 5 10 10 C 1.37104 * 119.99724 * 179.97438 * 9 7 6 11 11 H 1.07999 * 119.99932 * 359.97438 * 10 9 7 12 12 C 1.38948 * 119.99805 * 179.97438 * 10 9 7 13 13 N 1.31412 * 120.00021 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99976 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.47117 * 59.99594 * 14 12 10 16 16 H 1.48495 * 109.47200 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.46993 * 300.00032 * 14 12 10 18 18 N 1.46500 * 109.47045 * 240.00152 * 2 1 3 19 19 C 1.46500 * 120.00240 * 299.99670 * 18 2 1 20 20 C 1.34781 * 120.00246 * 120.00051 * 18 2 1 21 21 O 1.21279 * 119.99642 * 359.97438 * 20 18 2 22 22 C 1.50697 * 120.00155 * 179.97438 * 20 18 2 23 23 C 1.53004 * 109.47197 * 180.02562 * 22 20 18 24 24 N 1.46494 * 109.47106 * 179.97438 * 23 22 20 25 25 C 1.34954 * 126.03475 * 124.99860 * 24 23 22 26 26 C 1.35316 * 107.74368 * 179.73518 * 25 24 23 27 27 C 1.39868 * 107.92272 * 0.02562 * 26 25 24 28 28 N 1.30837 * 108.20148 * 359.97438 * 27 26 25 29 29 H 1.08998 * 109.47053 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47024 * 299.99959 * 1 2 3 31 31 H 1.09002 * 109.47247 * 60.00525 * 1 2 3 32 32 H 1.08996 * 109.46950 * 295.00340 * 4 2 1 33 33 H 1.09005 * 109.46914 * 55.00271 * 4 2 1 34 34 H 1.00897 * 110.99904 * 56.04814 * 5 4 2 35 35 H 1.09004 * 109.46785 * 299.99855 * 6 5 4 36 36 H 1.08997 * 109.47555 * 60.00082 * 6 5 4 37 37 H 0.96989 * 120.00040 * 359.97438 * 9 7 6 38 38 H 0.97000 * 119.99650 * 180.02562 * 13 12 10 39 39 H 1.08996 * 109.47459 * 270.00683 * 19 18 2 40 40 H 1.09008 * 109.47109 * 30.00134 * 19 18 2 41 41 H 1.08999 * 109.47692 * 150.00031 * 19 18 2 42 42 H 1.09002 * 109.47181 * 59.99624 * 22 20 18 43 43 H 1.08998 * 109.47063 * 300.00199 * 22 20 18 44 44 H 1.08999 * 109.46666 * 59.99687 * 23 22 20 45 45 H 1.09007 * 109.46675 * 300.00058 * 23 22 20 46 46 H 1.07999 * 126.12395 * 359.71501 * 25 24 23 47 47 H 1.07999 * 126.03437 * 179.97438 * 26 25 24 48 48 H 1.08001 * 125.89990 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5041 -0.8267 1.1904 6 6 4.0303 -1.5159 2.3761 7 6 5.5317 -1.6044 2.2807 8 8 6.1067 -1.1395 1.3192 9 7 6.2354 -2.2010 3.2632 10 6 7.6012 -2.2820 3.1761 11 1 8.1132 -1.8680 2.3200 12 6 8.3268 -2.8966 4.1893 13 7 7.7038 -3.3999 5.2312 14 14 10.1877 -3.0075 4.0703 15 1 10.7614 -1.6398 3.9971 16 1 10.7197 -3.7035 5.2693 17 1 10.5612 -3.7669 2.8501 18 7 2.0183 -0.6906 -1.1962 19 6 1.6645 -2.0932 -1.4281 20 6 2.7932 -0.0356 -2.0834 21 8 3.0858 1.1256 -1.8917 22 6 3.2960 -0.7461 -3.3136 23 6 4.1464 0.2154 -4.1462 24 7 4.6357 -0.4756 -5.3417 25 6 4.4663 -0.0706 -6.6179 26 6 5.0695 -0.9768 -7.4216 27 6 5.6261 -1.9698 -6.6089 28 7 5.3669 -1.6702 -5.3620 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.7516 -0.1583 2.1369 33 1 1.6054 -1.7199 1.2951 34 1 3.9280 0.0825 1.0823 35 1 3.7557 -0.9588 3.2719 36 1 3.6095 -2.5200 2.4295 37 1 5.7755 -2.5731 4.0318 38 1 8.2104 -3.8286 5.9386 39 1 2.4157 -2.7377 -0.9717 40 1 0.6904 -2.3003 -0.9847 41 1 1.6238 -2.2853 -2.5002 42 1 2.4484 -1.0891 -3.9070 43 1 3.9017 -1.6023 -3.0166 44 1 4.9939 0.5579 -3.5524 45 1 3.5410 1.0718 -4.4431 46 1 3.9427 0.8174 -6.9399 47 1 5.1127 -0.9401 -8.5001 48 1 6.1751 -2.8344 -6.9515 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319421407.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:59 Heat of formation + Delta-G solvation = 14.299093 kcal Electronic energy + Delta-G solvation = -29026.070157 eV Core-core repulsion = 24925.217750 eV Total energy + Delta-G solvation = -4100.852406 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.23214 -40.10130 -38.26554 -36.95481 -34.70347 -34.39004 -33.75580 -31.94040 -31.16800 -30.44093 -29.45519 -27.60443 -26.96694 -25.16625 -24.72581 -23.18037 -21.54783 -21.17848 -20.51066 -19.32435 -18.92157 -17.87434 -17.82467 -16.80391 -16.48371 -16.06364 -15.78241 -15.32451 -14.99214 -14.66997 -14.49350 -14.36052 -13.98050 -13.93541 -13.75941 -13.48492 -13.41140 -13.02461 -12.94580 -12.77467 -12.71907 -12.47786 -12.34541 -12.10445 -11.96987 -11.71412 -11.51895 -11.48294 -11.40646 -10.99508 -10.92502 -10.68919 -10.41895 -10.18756 -9.84660 -9.53249 -9.47159 -8.71721 -8.68202 -8.40101 -8.02932 -7.92942 -6.39205 -3.79811 1.79805 2.32973 2.63800 2.75579 2.99913 3.22617 3.27621 3.32764 3.93974 4.08279 4.27334 4.36469 4.50296 4.65972 4.72885 4.81559 4.90258 4.97637 5.01835 5.10649 5.11768 5.19296 5.27836 5.36872 5.40397 5.43508 5.49253 5.54554 5.57423 5.65165 5.71326 5.78804 5.78935 5.85419 5.88660 5.97377 5.98441 6.28343 6.48275 6.54392 6.88489 7.22524 7.33862 7.57737 7.62195 7.66764 8.09083 8.15552 8.64362 9.20814 9.57093 10.09108 10.78596 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.008473 B = 0.002843 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3303.917326 B = 9845.009997 C =12567.346234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.137 3.863 3 H 0.101 0.899 4 C 0.048 3.952 5 N -0.663 5.663 6 C 0.052 3.948 7 C 0.441 3.559 8 O -0.580 6.580 9 N -0.565 5.565 10 C -0.298 4.298 11 H 0.102 0.898 12 C 0.022 3.978 13 N -0.904 5.904 14 Si 0.930 3.070 15 H -0.274 1.274 16 H -0.284 1.284 17 H -0.273 1.273 18 N -0.590 5.590 19 C 0.078 3.922 20 C 0.530 3.470 21 O -0.547 6.547 22 C -0.149 4.149 23 C 0.149 3.851 24 N -0.370 5.370 25 C 0.052 3.948 26 C -0.279 4.279 27 C 0.040 3.960 28 N -0.289 5.289 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.037 0.963 33 H 0.073 0.927 34 H 0.351 0.649 35 H 0.042 0.958 36 H 0.084 0.916 37 H 0.392 0.608 38 H 0.271 0.729 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.066 0.934 42 H 0.093 0.907 43 H 0.112 0.888 44 H 0.097 0.903 45 H 0.102 0.898 46 H 0.172 0.828 47 H 0.145 0.855 48 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.302 3.814 -17.301 24.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.034 3.966 3 H 0.119 0.881 4 C -0.083 4.083 5 N -0.296 5.296 6 C -0.081 4.081 7 C 0.226 3.774 8 O -0.463 6.463 9 N -0.202 5.202 10 C -0.428 4.428 11 H 0.120 0.880 12 C -0.179 4.179 13 N -0.545 5.545 14 Si 0.757 3.243 15 H -0.199 1.199 16 H -0.210 1.210 17 H -0.199 1.199 18 N -0.322 5.322 19 C -0.065 4.065 20 C 0.317 3.683 21 O -0.425 6.425 22 C -0.189 4.189 23 C 0.028 3.972 24 N -0.153 5.153 25 C -0.095 4.095 26 C -0.309 4.309 27 C -0.146 4.146 28 N -0.110 5.110 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.055 0.945 33 H 0.091 0.909 34 H 0.170 0.830 35 H 0.059 0.941 36 H 0.102 0.898 37 H 0.225 0.775 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.111 0.889 43 H 0.130 0.870 44 H 0.116 0.884 45 H 0.120 0.880 46 H 0.189 0.811 47 H 0.163 0.837 48 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -16.596 3.798 -16.698 23.847 hybrid contribution 0.410 0.349 0.417 0.681 sum -16.186 4.147 -16.281 23.329 Atomic orbital electron populations 1.22094 0.94658 1.02406 1.02556 1.21099 0.93456 0.98047 0.84046 0.88145 1.22353 0.89766 1.00452 0.95704 1.60012 1.02978 1.26877 1.39696 1.21661 0.95316 0.99720 0.91381 1.19817 0.88025 0.84545 0.85025 1.90543 1.71075 1.51629 1.33100 1.41854 1.07379 1.51060 1.19880 1.19655 0.81540 1.35098 1.06493 0.88023 1.25249 1.00666 0.96795 0.95230 1.69606 1.36753 1.38733 1.09409 0.85923 0.82170 0.78605 0.77571 1.19924 1.20985 1.19855 1.47480 1.50455 1.12275 1.22015 1.21776 1.01302 0.81958 1.01492 1.20154 0.77468 0.86582 0.84047 1.90690 1.57536 1.17178 1.77105 1.21864 1.01132 1.00835 0.95079 1.21456 0.99229 0.93048 0.83495 1.48837 1.41922 1.18837 1.05660 1.22585 1.01698 1.00718 0.84461 1.21499 1.10316 0.98475 1.00589 1.23923 1.00225 1.00112 0.90328 1.77461 1.13552 0.98835 1.21165 0.92094 0.91282 0.92116 0.94489 0.90880 0.82975 0.94051 0.89804 0.77527 0.91869 0.91466 0.91216 0.91500 0.88865 0.86982 0.88434 0.87989 0.81106 0.83726 0.80145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.23 9.17 37.16 0.34 -0.89 16 2 C 0.14 1.50 2.88 -67.93 -0.20 1.30 16 3 H 0.10 1.30 6.90 -51.93 -0.36 0.94 16 4 C 0.05 0.57 4.98 -3.82 -0.02 0.55 16 5 N -0.66 -10.89 5.85 -115.05 -0.67 -11.56 16 6 C 0.05 0.93 6.17 -4.97 -0.03 0.90 16 7 C 0.44 10.67 7.82 -10.99 -0.09 10.58 16 8 O -0.58 -16.29 15.78 5.55 0.09 -16.20 16 9 N -0.56 -14.63 5.29 -10.96 -0.06 -14.69 16 10 C -0.30 -8.52 9.68 -14.93 -0.14 -8.66 16 11 H 0.10 3.06 7.16 -52.49 -0.38 2.68 16 12 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 13 N -0.90 -24.96 13.05 55.50 0.72 -24.23 16 14 Si 0.93 21.55 29.55 -169.99 -5.02 16.53 16 15 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 16 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 17 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 18 N -0.59 -6.69 2.49 -173.93 -0.43 -7.13 16 19 C 0.08 0.69 9.40 59.85 0.56 1.26 16 20 C 0.53 6.95 7.67 -10.98 -0.08 6.87 16 21 O -0.55 -8.84 15.31 5.56 0.09 -8.75 16 22 C -0.15 -1.64 4.44 -27.88 -0.12 -1.76 16 23 C 0.15 1.67 5.80 -4.04 -0.02 1.65 16 24 N -0.37 -4.36 3.68 -61.36 -0.23 -4.59 16 25 C 0.05 0.48 11.45 -17.22 -0.20 0.29 16 26 C -0.28 -2.62 10.80 -40.01 -0.43 -3.05 16 27 C 0.04 0.44 12.03 -17.37 -0.21 0.23 16 28 N -0.29 -3.98 12.42 30.62 0.38 -3.60 16 29 H 0.06 0.41 6.66 -51.93 -0.35 0.06 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.79 7.84 -51.93 -0.41 0.39 16 34 H 0.35 6.45 8.43 -39.29 -0.33 6.12 16 35 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 37 H 0.39 9.66 7.90 -40.82 -0.32 9.34 16 38 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.07 0.48 6.43 -51.92 -0.33 0.15 16 41 H 0.07 0.49 6.44 -51.93 -0.33 0.15 16 42 H 0.09 0.82 7.40 -51.93 -0.38 0.44 16 43 H 0.11 1.43 8.11 -51.93 -0.42 1.01 16 44 H 0.10 1.30 8.10 -51.93 -0.42 0.88 16 45 H 0.10 0.93 8.03 -51.92 -0.42 0.51 16 46 H 0.17 0.99 8.06 -52.49 -0.42 0.57 16 47 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 48 H 0.18 1.45 8.06 -52.49 -0.42 1.03 16 LS Contribution 403.25 15.07 6.08 6.08 Total: -1.00 -35.82 403.25 -7.19 -43.01 By element: Atomic # 1 Polarization: 22.77 SS G_CDS: -7.39 Total: 15.38 kcal Atomic # 6 Polarization: 10.50 SS G_CDS: -0.74 Total: 9.76 kcal Atomic # 7 Polarization: -65.51 SS G_CDS: -0.28 Total: -65.80 kcal Atomic # 8 Polarization: -25.13 SS G_CDS: 0.17 Total: -24.95 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -35.82 -7.19 -43.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319421407.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.312 kcal (2) G-P(sol) polarization free energy of solvation -35.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds