Wall clock time and date at job start Tue Mar 31 2020 20:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47053 * 2 1 4 4 C 1.53003 * 109.47184 * 119.99975 * 2 1 3 5 5 N 1.46902 * 109.46936 * 174.99898 * 4 2 1 6 6 C 1.46904 * 110.99711 * 180.02562 * 5 4 2 7 7 C 1.50699 * 109.46947 * 180.02562 * 6 5 4 8 8 O 1.21292 * 120.00217 * 359.97438 * 7 6 5 9 9 N 1.34778 * 119.99744 * 180.02562 * 7 6 5 10 10 C 1.37104 * 119.99724 * 179.97438 * 9 7 6 11 11 H 1.07999 * 119.99932 * 359.97438 * 10 9 7 12 12 C 1.38948 * 119.99805 * 179.97438 * 10 9 7 13 13 N 1.31412 * 120.00021 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99976 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.47117 * 59.99594 * 14 12 10 16 16 H 1.48495 * 109.47200 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.46993 * 300.00032 * 14 12 10 18 18 N 1.46500 * 109.47045 * 240.00152 * 2 1 3 19 19 C 1.46500 * 120.00240 * 299.99670 * 18 2 1 20 20 C 1.34781 * 120.00246 * 120.00051 * 18 2 1 21 21 O 1.21279 * 119.99642 * 359.97438 * 20 18 2 22 22 C 1.50697 * 120.00155 * 179.97438 * 20 18 2 23 23 C 1.53004 * 109.47197 * 180.02562 * 22 20 18 24 24 N 1.46494 * 109.47106 * 179.97438 * 23 22 20 25 25 C 1.34954 * 126.03475 * 124.99860 * 24 23 22 26 26 C 1.35316 * 107.74368 * 179.73518 * 25 24 23 27 27 C 1.39868 * 107.92272 * 0.02562 * 26 25 24 28 28 N 1.30837 * 108.20148 * 359.97438 * 27 26 25 29 29 H 1.08998 * 109.47053 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47024 * 299.99959 * 1 2 3 31 31 H 1.09002 * 109.47247 * 60.00525 * 1 2 3 32 32 H 1.08996 * 109.46950 * 295.00340 * 4 2 1 33 33 H 1.09005 * 109.46914 * 55.00271 * 4 2 1 34 34 H 1.00897 * 110.99904 * 56.04814 * 5 4 2 35 35 H 1.09004 * 109.46785 * 299.99855 * 6 5 4 36 36 H 1.08997 * 109.47555 * 60.00082 * 6 5 4 37 37 H 0.96989 * 120.00040 * 359.97438 * 9 7 6 38 38 H 0.97000 * 119.99650 * 180.02562 * 13 12 10 39 39 H 1.08996 * 109.47459 * 270.00683 * 19 18 2 40 40 H 1.09008 * 109.47109 * 30.00134 * 19 18 2 41 41 H 1.08999 * 109.47692 * 150.00031 * 19 18 2 42 42 H 1.09002 * 109.47181 * 59.99624 * 22 20 18 43 43 H 1.08998 * 109.47063 * 300.00199 * 22 20 18 44 44 H 1.08999 * 109.46666 * 59.99687 * 23 22 20 45 45 H 1.09007 * 109.46675 * 300.00058 * 23 22 20 46 46 H 1.07999 * 126.12395 * 359.71501 * 25 24 23 47 47 H 1.07999 * 126.03437 * 179.97438 * 26 25 24 48 48 H 1.08001 * 125.89990 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5041 -0.8267 1.1904 6 6 4.0303 -1.5159 2.3761 7 6 5.5317 -1.6044 2.2807 8 8 6.1067 -1.1395 1.3192 9 7 6.2354 -2.2010 3.2632 10 6 7.6012 -2.2820 3.1761 11 1 8.1132 -1.8680 2.3200 12 6 8.3268 -2.8966 4.1893 13 7 7.7038 -3.3999 5.2312 14 14 10.1877 -3.0075 4.0703 15 1 10.7614 -1.6398 3.9971 16 1 10.7197 -3.7035 5.2693 17 1 10.5612 -3.7669 2.8501 18 7 2.0183 -0.6906 -1.1962 19 6 1.6645 -2.0932 -1.4281 20 6 2.7932 -0.0356 -2.0834 21 8 3.0858 1.1256 -1.8917 22 6 3.2960 -0.7461 -3.3136 23 6 4.1464 0.2154 -4.1462 24 7 4.6357 -0.4756 -5.3417 25 6 4.4663 -0.0706 -6.6179 26 6 5.0695 -0.9768 -7.4216 27 6 5.6261 -1.9698 -6.6089 28 7 5.3669 -1.6702 -5.3620 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.7516 -0.1583 2.1369 33 1 1.6054 -1.7199 1.2951 34 1 3.9280 0.0825 1.0823 35 1 3.7557 -0.9588 3.2719 36 1 3.6095 -2.5200 2.4295 37 1 5.7755 -2.5731 4.0318 38 1 8.2104 -3.8286 5.9386 39 1 2.4157 -2.7377 -0.9717 40 1 0.6904 -2.3003 -0.9847 41 1 1.6238 -2.2853 -2.5002 42 1 2.4484 -1.0891 -3.9070 43 1 3.9017 -1.6023 -3.0166 44 1 4.9939 0.5579 -3.5524 45 1 3.5410 1.0718 -4.4431 46 1 3.9427 0.8174 -6.9399 47 1 5.1127 -0.9401 -8.5001 48 1 6.1751 -2.8344 -6.9515 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319421407.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:58 Heat of formation + Delta-G solvation = -12.695898 kcal Electronic energy + Delta-G solvation = -29027.240747 eV Core-core repulsion = 24925.217750 eV Total energy + Delta-G solvation = -4102.022997 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.03944 -41.07590 -40.15121 -38.05127 -36.19442 -35.58564 -35.27401 -33.32132 -32.82300 -31.26524 -30.27914 -28.98306 -27.78346 -26.71238 -25.78954 -24.53933 -22.44983 -21.93771 -21.40238 -21.07905 -20.05041 -19.83460 -18.72564 -17.97017 -17.63667 -17.18996 -16.96659 -16.66710 -16.42843 -16.04963 -15.91424 -15.36372 -15.29511 -15.14359 -14.92701 -14.53964 -14.53569 -14.12860 -13.92380 -13.77878 -13.56769 -13.53975 -13.46060 -13.24450 -13.09866 -12.93526 -12.85993 -12.76490 -12.55953 -12.46365 -12.38339 -12.14403 -11.76620 -11.53841 -11.51299 -10.88020 -10.40892 -10.39128 -10.04668 -9.58139 -9.50436 -9.31829 -8.49678 -5.98504 1.01593 1.36820 1.38491 1.49608 1.50116 1.63869 1.99622 2.02568 2.14091 2.26774 2.89632 3.17264 3.45148 3.53193 3.59365 3.80473 3.89308 4.08937 4.13828 4.16436 4.25089 4.30463 4.33981 4.34839 4.48037 4.53011 4.55318 4.63628 4.67992 4.70907 4.75534 4.83318 4.86507 4.92915 5.01478 5.08998 5.18559 5.29910 5.37369 5.62176 5.77668 5.86392 6.08587 6.15067 6.29278 6.41457 6.57539 6.81625 7.09834 7.17604 7.53054 8.09539 8.67543 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.008473 B = 0.002843 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3303.917326 B = 9845.009997 C =12567.346234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.135 3.865 3 H 0.075 0.925 4 C 0.050 3.950 5 N -0.678 5.678 6 C 0.068 3.932 7 C 0.435 3.565 8 O -0.625 6.625 9 N -0.572 5.572 10 C -0.336 4.336 11 H 0.074 0.926 12 C -0.011 4.011 13 N -0.919 5.919 14 Si 0.991 3.009 15 H -0.273 1.273 16 H -0.267 1.267 17 H -0.273 1.273 18 N -0.589 5.589 19 C 0.075 3.925 20 C 0.521 3.479 21 O -0.586 6.586 22 C -0.135 4.135 23 C 0.153 3.847 24 N -0.382 5.382 25 C 0.054 3.946 26 C -0.283 4.283 27 C 0.034 3.966 28 N -0.346 5.346 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.060 0.940 32 H 0.054 0.946 33 H 0.091 0.909 34 H 0.335 0.665 35 H 0.065 0.935 36 H 0.107 0.893 37 H 0.397 0.603 38 H 0.279 0.721 39 H 0.047 0.953 40 H 0.097 0.903 41 H 0.083 0.917 42 H 0.120 0.880 43 H 0.090 0.910 44 H 0.064 0.936 45 H 0.125 0.875 46 H 0.208 0.792 47 H 0.172 0.828 48 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.284 3.230 -17.827 26.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.032 3.968 3 H 0.093 0.907 4 C -0.079 4.079 5 N -0.309 5.309 6 C -0.064 4.064 7 C 0.223 3.777 8 O -0.512 6.512 9 N -0.210 5.210 10 C -0.465 4.465 11 H 0.092 0.908 12 C -0.211 4.211 13 N -0.560 5.560 14 Si 0.815 3.185 15 H -0.198 1.198 16 H -0.191 1.191 17 H -0.198 1.198 18 N -0.319 5.319 19 C -0.067 4.067 20 C 0.309 3.691 21 O -0.467 6.467 22 C -0.175 4.175 23 C 0.031 3.969 24 N -0.165 5.165 25 C -0.092 4.092 26 C -0.312 4.312 27 C -0.151 4.151 28 N -0.168 5.168 29 H 0.097 0.903 30 H 0.100 0.900 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.110 0.890 34 H 0.153 0.847 35 H 0.083 0.917 36 H 0.125 0.875 37 H 0.231 0.769 38 H 0.088 0.912 39 H 0.065 0.935 40 H 0.116 0.884 41 H 0.102 0.898 42 H 0.138 0.862 43 H 0.109 0.891 44 H 0.082 0.918 45 H 0.143 0.857 46 H 0.224 0.776 47 H 0.189 0.811 48 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -18.630 3.169 -17.199 25.552 hybrid contribution 0.997 0.534 0.540 1.253 sum -17.633 3.702 -16.659 24.539 Atomic orbital electron populations 1.22014 0.91550 1.03753 1.03250 1.21164 0.95677 0.96516 0.83482 0.90713 1.22487 0.86667 1.01924 0.96843 1.60030 1.05719 1.25952 1.39221 1.21517 0.90279 1.01613 0.92986 1.20969 0.90732 0.82485 0.83540 1.90514 1.72864 1.53061 1.34714 1.41912 1.06808 1.51684 1.20582 1.19591 0.83143 1.37115 1.06674 0.90758 1.26013 1.04872 0.95718 0.94485 1.69658 1.38342 1.38366 1.09599 0.85021 0.76848 0.78609 0.78056 1.19840 1.19088 1.19821 1.47635 1.49560 1.13151 1.21605 1.21929 1.01941 0.79973 1.02830 1.20533 0.77371 0.86316 0.84862 1.90665 1.59048 1.18896 1.78077 1.21730 1.01530 0.99640 0.94613 1.21365 0.98223 0.93784 0.83499 1.48869 1.42415 1.18717 1.06461 1.23272 1.01005 1.01577 0.83354 1.21883 1.09693 0.97768 1.01867 1.24440 0.99734 1.01010 0.89956 1.77406 1.15741 1.00614 1.23009 0.90320 0.89974 0.92102 0.92814 0.89034 0.84724 0.91729 0.87498 0.76911 0.91200 0.93470 0.88413 0.89839 0.86168 0.89130 0.91763 0.85729 0.77552 0.81052 0.78177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.17 71.98 0.66 -1.21 16 2 C 0.14 2.80 2.88 44.99 0.13 2.93 16 3 H 0.07 1.96 6.90 -2.39 -0.02 1.94 16 4 C 0.05 1.09 4.98 86.30 0.43 1.52 16 5 N -0.68 -22.14 5.85 -517.91 -3.03 -25.17 16 6 C 0.07 2.39 6.17 85.56 0.53 2.91 16 7 C 0.44 21.58 7.82 87.66 0.69 22.26 16 8 O -0.63 -36.73 15.78 -3.07 -0.05 -36.78 16 9 N -0.57 -30.32 5.29 -306.98 -1.62 -31.94 16 10 C -0.34 -19.74 9.68 84.04 0.81 -18.93 16 11 H 0.07 4.70 7.16 -2.91 -0.02 4.68 16 12 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 13 N -0.92 -50.39 13.05 21.66 0.28 -50.11 16 14 Si 0.99 44.23 29.55 68.60 2.03 46.26 16 15 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 16 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 17 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 18 N -0.59 -12.97 2.49 -822.58 -2.04 -15.01 16 19 C 0.08 1.22 9.40 127.77 1.20 2.42 16 20 C 0.52 14.00 7.67 87.66 0.67 14.67 16 21 O -0.59 -19.84 15.31 -3.03 -0.05 -19.89 16 22 C -0.13 -3.05 4.44 29.85 0.13 -2.91 16 23 C 0.15 3.57 5.80 86.38 0.50 4.07 16 24 N -0.38 -9.05 3.68 -348.05 -1.28 -10.33 16 25 C 0.05 0.92 11.45 83.54 0.96 1.88 16 26 C -0.28 -4.84 10.80 21.99 0.24 -4.60 16 27 C 0.03 0.74 12.03 85.24 1.02 1.76 16 28 N -0.35 -9.80 12.42 -57.02 -0.71 -10.51 16 29 H 0.08 0.74 6.66 -2.39 -0.02 0.72 16 30 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.06 0.80 8.14 -2.39 -0.02 0.79 16 32 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.09 1.69 7.84 -2.38 -0.02 1.67 16 34 H 0.34 12.74 8.43 -89.70 -0.76 11.98 16 35 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 36 H 0.11 3.27 8.14 -2.39 -0.02 3.25 16 37 H 0.40 19.76 7.90 -92.72 -0.73 19.03 16 38 H 0.28 14.28 8.31 -92.71 -0.77 13.51 16 39 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.10 1.02 6.43 -2.38 -0.02 1.01 16 41 H 0.08 1.06 6.44 -2.39 -0.02 1.05 16 42 H 0.12 1.99 7.40 -2.39 -0.02 1.97 16 43 H 0.09 2.47 8.11 -2.39 -0.02 2.45 16 44 H 0.06 1.90 8.10 -2.39 -0.02 1.88 16 45 H 0.12 2.26 8.03 -2.38 -0.02 2.24 16 46 H 0.21 1.81 8.06 -2.91 -0.02 1.78 16 47 H 0.17 1.88 8.06 -2.91 -0.02 1.86 16 48 H 0.20 3.12 8.06 -2.91 -0.02 3.10 16 Total: -1.00 -81.80 403.25 1.47 -80.34 By element: Atomic # 1 Polarization: 47.02 SS G_CDS: -0.50 Total: 46.52 kcal Atomic # 6 Polarization: 18.19 SS G_CDS: 8.44 Total: 26.63 kcal Atomic # 7 Polarization: -134.67 SS G_CDS: -8.40 Total: -143.07 kcal Atomic # 8 Polarization: -56.57 SS G_CDS: -0.09 Total: -56.67 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -81.80 1.47 -80.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319421407.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.640 kcal (2) G-P(sol) polarization free energy of solvation -81.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds