Wall clock time and date at job start Tue Mar 31 2020 20:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46503 * 109.47164 * 2 1 4 4 C 1.34252 * 125.75375 * 125.00128 * 3 2 1 5 5 C 1.38043 * 107.41889 * 180.02562 * 4 3 2 6 6 C 1.47431 * 126.41731 * 179.97438 * 5 4 3 7 7 O 1.21604 * 119.99968 * 8.20256 * 6 5 4 8 8 N 1.34780 * 119.99945 * 188.20726 * 6 5 4 9 9 C 1.46502 * 120.00100 * 6.24765 * 8 6 5 10 10 C 1.46498 * 119.99828 * 186.52064 * 8 6 5 11 11 H 1.09003 * 109.47009 * 359.72491 * 10 8 6 12 12 C 1.52997 * 109.47391 * 239.72450 * 10 8 6 13 13 C 1.53001 * 109.47071 * 119.72109 * 10 8 6 14 14 N 1.46897 * 109.47529 * 305.00185 * 13 10 8 15 15 C 1.46895 * 111.00210 * 179.97438 * 14 13 10 16 16 C 1.50701 * 109.47457 * 180.02562 * 15 14 13 17 17 O 1.21296 * 119.99570 * 0.02562 * 16 15 14 18 18 N 1.34768 * 120.00228 * 179.97438 * 16 15 14 19 19 C 1.37098 * 119.99842 * 179.97438 * 18 16 15 20 20 H 1.08002 * 120.00084 * 359.97438 * 19 18 16 21 21 C 1.38950 * 119.99949 * 180.02562 * 19 18 16 22 22 N 1.31409 * 119.99931 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 120.00083 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47364 * 89.99630 * 23 21 19 25 25 H 1.48497 * 109.46827 * 209.99658 * 23 21 19 26 26 H 1.48499 * 109.46965 * 329.99726 * 23 21 19 27 27 C 1.41292 * 107.17127 * 0.22756 * 5 4 3 28 28 N 1.30448 * 108.01779 * 359.61540 * 27 5 4 29 29 H 1.08998 * 109.46573 * 299.99652 * 1 2 3 30 30 H 1.08994 * 109.47287 * 59.99782 * 1 2 3 31 31 H 1.09003 * 109.46904 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47180 * 240.00562 * 2 1 3 33 33 H 1.08994 * 109.47287 * 120.00218 * 2 1 3 34 34 H 1.08005 * 126.29393 * 0.04193 * 4 3 2 35 35 H 1.09003 * 109.46719 * 276.17592 * 9 8 6 36 36 H 1.08996 * 109.46775 * 36.17585 * 9 8 6 37 37 H 1.08991 * 109.46913 * 156.18102 * 9 8 6 38 38 H 1.09003 * 109.47077 * 299.99999 * 12 10 8 39 39 H 1.09004 * 109.46980 * 59.99647 * 12 10 8 40 40 H 1.09000 * 109.47577 * 179.97438 * 12 10 8 41 41 H 1.09006 * 109.47115 * 65.00411 * 13 10 8 42 42 H 1.08995 * 109.47347 * 184.99676 * 13 10 8 43 43 H 1.00895 * 110.99581 * 303.95426 * 14 13 10 44 44 H 1.09003 * 109.47107 * 300.00220 * 15 14 13 45 45 H 1.09003 * 109.47015 * 59.99792 * 15 14 13 46 46 H 0.96998 * 120.00198 * 359.97438 * 18 16 15 47 47 H 0.97001 * 120.00160 * 179.97438 * 22 21 19 48 48 H 1.07992 * 125.99218 * 179.74218 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8690 1.9125 0.8925 5 6 3.0705 3.2311 0.5371 6 6 3.9314 4.2038 1.2345 7 8 4.6625 3.8340 2.1331 8 7 3.9081 5.5028 0.8761 9 6 2.9318 5.9733 -0.1097 10 6 4.8630 6.4432 1.4678 11 1 5.5039 5.9144 2.1734 12 6 4.1018 7.5497 2.2006 13 6 5.7220 7.0608 0.3626 14 7 6.3596 5.9917 -0.4174 15 6 7.1938 6.5487 -1.4905 16 6 7.8294 5.4247 -2.2675 17 8 7.6087 4.2728 -1.9580 18 7 8.6422 5.6992 -3.3069 19 6 9.2208 4.6766 -4.0134 20 1 9.0256 3.6511 -3.7367 21 6 10.0592 4.9597 -5.0846 22 7 10.2971 6.2076 -5.4209 23 14 10.8471 3.5664 -6.0477 24 1 9.9564 3.1744 -7.1694 25 1 12.1551 4.0160 -6.5882 26 1 11.0560 2.4012 -5.1511 27 6 2.2926 3.4757 -0.6168 28 7 1.6763 2.3694 -0.9299 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8901 33 1 1.8933 -0.5138 0.8899 34 1 3.3142 1.4020 1.7337 35 1 3.3137 5.7921 -1.1144 36 1 1.9927 5.4366 0.0244 37 1 2.7628 7.0413 0.0276 38 1 3.4609 8.0784 1.4950 39 1 3.4897 7.1096 2.9879 40 1 4.8122 8.2491 2.6412 41 1 5.0928 7.6630 -0.2929 42 1 6.4901 7.6921 0.8093 43 1 6.8973 5.3806 0.1789 44 1 6.5745 7.1470 -2.1587 45 1 7.9721 7.1767 -1.0569 46 1 8.8178 6.6203 -3.5551 47 1 10.8827 6.4052 -6.1685 48 1 2.2223 4.4135 -1.1477 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319435521.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:37 Heat of formation + Delta-G solvation = 25.927915 kcal Electronic energy + Delta-G solvation = -29403.912248 eV Core-core repulsion = 25303.564105 eV Total energy + Delta-G solvation = -4100.348143 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.46214 -39.49648 -38.18273 -36.60651 -34.95578 -34.43204 -33.71103 -31.87134 -31.13954 -30.62000 -29.33064 -27.53412 -27.09721 -24.98429 -24.38783 -23.30815 -22.75802 -20.86560 -20.61498 -19.39027 -19.01179 -17.82499 -17.46303 -16.61040 -16.26719 -15.86005 -15.62449 -15.19535 -15.12730 -14.64455 -14.48241 -14.26272 -14.15422 -13.87339 -13.69326 -13.44991 -13.16646 -13.03503 -12.88787 -12.69771 -12.53291 -12.45261 -12.25588 -11.89318 -11.77785 -11.66973 -11.57785 -11.41990 -11.37442 -11.00713 -10.96394 -10.79854 -10.36312 -10.17631 -9.62441 -9.59150 -9.46139 -8.70979 -8.48029 -8.31193 -7.96418 -7.89770 -6.37486 -3.77828 1.56257 2.23423 2.26099 3.14084 3.20808 3.28821 3.35259 3.63080 3.97326 4.13235 4.21276 4.36900 4.59449 4.68573 4.76223 4.83161 4.90411 5.02545 5.08664 5.14669 5.17316 5.25621 5.27435 5.32074 5.33210 5.48129 5.49864 5.52973 5.58659 5.63182 5.65129 5.75564 5.79987 5.85424 5.97233 6.03576 6.10569 6.32367 6.39464 6.70815 6.76171 7.30458 7.51144 7.59423 7.60406 7.74418 8.11539 8.46999 8.66932 9.23033 9.59815 10.12174 10.80503 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009432 B = 0.002968 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2967.905794 B = 9432.182445 C =11700.648952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.125 3.875 3 N -0.363 5.363 4 C 0.123 3.877 5 C -0.283 4.283 6 C 0.606 3.394 7 O -0.557 6.557 8 N -0.589 5.589 9 C 0.070 3.930 10 C 0.141 3.859 11 H 0.100 0.900 12 C -0.158 4.158 13 C 0.048 3.952 14 N -0.662 5.662 15 C 0.052 3.948 16 C 0.442 3.558 17 O -0.579 6.579 18 N -0.566 5.566 19 C -0.297 4.297 20 H 0.102 0.898 21 C 0.021 3.979 22 N -0.904 5.904 23 Si 0.929 3.071 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.270 1.270 27 C 0.069 3.931 28 N -0.300 5.300 29 H 0.060 0.940 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.098 0.902 34 H 0.185 0.815 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.067 0.933 41 H 0.073 0.927 42 H 0.036 0.964 43 H 0.350 0.650 44 H 0.084 0.916 45 H 0.041 0.959 46 H 0.392 0.608 47 H 0.271 0.729 48 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.476 -0.777 13.491 23.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.005 3.995 3 N -0.142 5.142 4 C -0.028 4.028 5 C -0.297 4.297 6 C 0.396 3.604 7 O -0.436 6.436 8 N -0.320 5.320 9 C -0.073 4.073 10 C 0.037 3.963 11 H 0.118 0.882 12 C -0.217 4.217 13 C -0.083 4.083 14 N -0.295 5.295 15 C -0.081 4.081 16 C 0.227 3.773 17 O -0.463 6.463 18 N -0.203 5.203 19 C -0.426 4.426 20 H 0.120 0.880 21 C -0.180 4.180 22 N -0.545 5.545 23 Si 0.756 3.244 24 H -0.204 1.204 25 H -0.210 1.210 26 H -0.195 1.195 27 C -0.118 4.118 28 N -0.120 5.120 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.107 0.893 33 H 0.116 0.884 34 H 0.202 0.798 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.086 0.914 41 H 0.091 0.909 42 H 0.054 0.946 43 H 0.170 0.830 44 H 0.102 0.898 45 H 0.059 0.941 46 H 0.225 0.775 47 H 0.080 0.920 48 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -20.524 -2.501 12.775 24.304 hybrid contribution 1.975 0.753 0.102 2.116 sum -18.549 -1.748 12.877 22.648 Atomic orbital electron populations 1.22046 0.93559 1.02944 1.03654 1.21799 0.96226 0.77207 1.04292 1.48606 1.34533 1.10533 1.20555 1.22924 0.91730 0.93555 0.94583 1.20185 1.10977 0.95244 1.03343 1.17110 0.80780 0.81083 0.81436 1.90725 1.42462 1.78796 1.31636 1.47194 1.34460 1.07507 1.42876 1.22221 0.91863 1.00364 0.92895 1.21057 0.90510 0.90129 0.94640 0.88196 1.22097 1.00837 0.98270 1.00485 1.22375 0.97230 0.93628 0.95075 1.60000 1.36904 1.18114 1.14444 1.21658 0.95597 0.96250 0.94560 1.19843 0.83672 0.89894 0.83890 1.90547 1.64442 1.21476 1.69786 1.41859 1.41463 1.09667 1.27345 1.19692 1.23646 0.89674 1.09614 0.88029 1.25242 0.97704 0.97355 0.97698 1.69612 1.38027 1.17658 1.29232 0.85871 0.78217 0.80696 0.79596 1.20428 1.20960 1.19455 1.24983 0.93938 0.97755 0.95159 1.77146 1.24851 0.96927 1.13039 0.92090 0.90918 0.90604 0.89268 0.88380 0.79837 0.91486 0.90740 0.91178 0.92151 0.92054 0.91441 0.90889 0.94553 0.83012 0.89802 0.94089 0.77527 0.91952 0.77982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.03 10.09 37.16 0.37 -0.66 16 2 C 0.13 0.92 7.21 -4.04 -0.03 0.89 16 3 N -0.36 -4.17 3.65 -60.81 -0.22 -4.39 16 4 C 0.12 1.52 11.26 -16.57 -0.19 1.33 16 5 C -0.28 -3.98 5.92 -105.06 -0.62 -4.60 16 6 C 0.61 9.37 7.65 -12.52 -0.10 9.28 16 7 O -0.56 -10.24 16.26 5.27 0.09 -10.16 16 8 N -0.59 -7.45 2.49 -175.20 -0.44 -7.89 16 9 C 0.07 0.67 7.77 59.85 0.46 1.13 16 10 C 0.14 1.65 2.87 -67.93 -0.19 1.46 16 11 H 0.10 1.39 6.92 -51.93 -0.36 1.03 16 12 C -0.16 -1.35 9.18 37.16 0.34 -1.01 16 13 C 0.05 0.58 4.98 -3.82 -0.02 0.56 16 14 N -0.66 -11.15 5.85 -115.06 -0.67 -11.82 16 15 C 0.05 0.94 6.17 -4.98 -0.03 0.91 16 16 C 0.44 10.77 7.82 -10.99 -0.09 10.68 16 17 O -0.58 -16.41 15.78 5.54 0.09 -16.32 16 18 N -0.57 -14.73 5.29 -10.96 -0.06 -14.79 16 19 C -0.30 -8.49 9.68 -14.93 -0.14 -8.64 16 20 H 0.10 3.07 7.16 -52.49 -0.38 2.69 16 21 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 22 N -0.90 -25.02 13.05 55.50 0.72 -24.30 16 23 Si 0.93 21.55 29.55 -169.99 -5.02 16.53 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 26 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 27 C 0.07 0.88 9.87 -16.98 -0.17 0.72 16 28 N -0.30 -4.02 12.33 30.86 0.38 -3.64 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.10 0.47 8.06 -51.93 -0.42 0.05 16 34 H 0.18 1.84 8.06 -52.48 -0.42 1.41 16 35 H 0.07 0.72 7.27 -51.93 -0.38 0.34 16 36 H 0.07 0.62 5.43 -51.93 -0.28 0.34 16 37 H 0.07 0.52 6.44 -51.93 -0.33 0.18 16 38 H 0.06 0.44 6.67 -51.93 -0.35 0.10 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.81 7.84 -51.93 -0.41 0.40 16 42 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.35 6.61 8.43 -39.29 -0.33 6.28 16 44 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 45 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 46 H 0.39 9.70 7.90 -40.82 -0.32 9.38 16 47 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 48 H 0.20 2.13 4.51 -52.49 -0.24 1.90 16 LS Contribution 397.79 15.07 5.99 5.99 Total: -1.00 -36.82 397.79 -6.78 -43.61 By element: Atomic # 1 Polarization: 21.77 SS G_CDS: -7.15 Total: 14.62 kcal Atomic # 6 Polarization: 13.04 SS G_CDS: -0.49 Total: 12.55 kcal Atomic # 7 Polarization: -66.54 SS G_CDS: -0.28 Total: -66.82 kcal Atomic # 8 Polarization: -26.65 SS G_CDS: 0.17 Total: -26.48 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -36.82 -6.78 -43.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319435521.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.535 kcal (2) G-P(sol) polarization free energy of solvation -36.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds