Wall clock time and date at job start Tue Mar 31 2020 20:25:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46503 * 109.47164 * 2 1 4 4 C 1.34252 * 125.75375 * 125.00128 * 3 2 1 5 5 C 1.38043 * 107.41889 * 180.02562 * 4 3 2 6 6 C 1.47431 * 126.41731 * 179.97438 * 5 4 3 7 7 O 1.21604 * 119.99968 * 8.20256 * 6 5 4 8 8 N 1.34780 * 119.99945 * 188.20726 * 6 5 4 9 9 C 1.46502 * 120.00100 * 6.24765 * 8 6 5 10 10 C 1.46498 * 119.99828 * 186.52064 * 8 6 5 11 11 H 1.09003 * 109.47009 * 359.72491 * 10 8 6 12 12 C 1.52997 * 109.47391 * 239.72450 * 10 8 6 13 13 C 1.53001 * 109.47071 * 119.72109 * 10 8 6 14 14 N 1.46897 * 109.47529 * 305.00185 * 13 10 8 15 15 C 1.46895 * 111.00210 * 179.97438 * 14 13 10 16 16 C 1.50701 * 109.47457 * 180.02562 * 15 14 13 17 17 O 1.21296 * 119.99570 * 0.02562 * 16 15 14 18 18 N 1.34768 * 120.00228 * 179.97438 * 16 15 14 19 19 C 1.37098 * 119.99842 * 179.97438 * 18 16 15 20 20 H 1.08002 * 120.00084 * 359.97438 * 19 18 16 21 21 C 1.38950 * 119.99949 * 180.02562 * 19 18 16 22 22 N 1.31409 * 119.99931 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 120.00083 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47364 * 89.99630 * 23 21 19 25 25 H 1.48497 * 109.46827 * 209.99658 * 23 21 19 26 26 H 1.48499 * 109.46965 * 329.99726 * 23 21 19 27 27 C 1.41292 * 107.17127 * 0.22756 * 5 4 3 28 28 N 1.30448 * 108.01779 * 359.61540 * 27 5 4 29 29 H 1.08998 * 109.46573 * 299.99652 * 1 2 3 30 30 H 1.08994 * 109.47287 * 59.99782 * 1 2 3 31 31 H 1.09003 * 109.46904 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47180 * 240.00562 * 2 1 3 33 33 H 1.08994 * 109.47287 * 120.00218 * 2 1 3 34 34 H 1.08005 * 126.29393 * 0.04193 * 4 3 2 35 35 H 1.09003 * 109.46719 * 276.17592 * 9 8 6 36 36 H 1.08996 * 109.46775 * 36.17585 * 9 8 6 37 37 H 1.08991 * 109.46913 * 156.18102 * 9 8 6 38 38 H 1.09003 * 109.47077 * 299.99999 * 12 10 8 39 39 H 1.09004 * 109.46980 * 59.99647 * 12 10 8 40 40 H 1.09000 * 109.47577 * 179.97438 * 12 10 8 41 41 H 1.09006 * 109.47115 * 65.00411 * 13 10 8 42 42 H 1.08995 * 109.47347 * 184.99676 * 13 10 8 43 43 H 1.00895 * 110.99581 * 303.95426 * 14 13 10 44 44 H 1.09003 * 109.47107 * 300.00220 * 15 14 13 45 45 H 1.09003 * 109.47015 * 59.99792 * 15 14 13 46 46 H 0.96998 * 120.00198 * 359.97438 * 18 16 15 47 47 H 0.97001 * 120.00160 * 179.97438 * 22 21 19 48 48 H 1.07992 * 125.99218 * 179.74218 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8690 1.9125 0.8925 5 6 3.0705 3.2311 0.5371 6 6 3.9314 4.2038 1.2345 7 8 4.6625 3.8340 2.1331 8 7 3.9081 5.5028 0.8761 9 6 2.9318 5.9733 -0.1097 10 6 4.8630 6.4432 1.4678 11 1 5.5039 5.9144 2.1734 12 6 4.1018 7.5497 2.2006 13 6 5.7220 7.0608 0.3626 14 7 6.3596 5.9917 -0.4174 15 6 7.1938 6.5487 -1.4905 16 6 7.8294 5.4247 -2.2675 17 8 7.6087 4.2728 -1.9580 18 7 8.6422 5.6992 -3.3069 19 6 9.2208 4.6766 -4.0134 20 1 9.0256 3.6511 -3.7367 21 6 10.0592 4.9597 -5.0846 22 7 10.2971 6.2076 -5.4209 23 14 10.8471 3.5664 -6.0477 24 1 9.9564 3.1744 -7.1694 25 1 12.1551 4.0160 -6.5882 26 1 11.0560 2.4012 -5.1511 27 6 2.2926 3.4757 -0.6168 28 7 1.6763 2.3694 -0.9299 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8901 33 1 1.8933 -0.5138 0.8899 34 1 3.3142 1.4020 1.7337 35 1 3.3137 5.7921 -1.1144 36 1 1.9927 5.4366 0.0244 37 1 2.7628 7.0413 0.0276 38 1 3.4609 8.0784 1.4950 39 1 3.4897 7.1096 2.9879 40 1 4.8122 8.2491 2.6412 41 1 5.0928 7.6630 -0.2929 42 1 6.4901 7.6921 0.8093 43 1 6.8973 5.3806 0.1789 44 1 6.5745 7.1470 -2.1587 45 1 7.9721 7.1767 -1.0569 46 1 8.8178 6.6203 -3.5551 47 1 10.8827 6.4052 -6.1685 48 1 2.2223 4.4135 -1.1477 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319435521.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:36 Heat of formation + Delta-G solvation = -2.280711 kcal Electronic energy + Delta-G solvation = -29405.135466 eV Core-core repulsion = 25303.564105 eV Total energy + Delta-G solvation = -4101.571361 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.41160 -40.56930 -40.05975 -37.79321 -36.18870 -35.74236 -35.24203 -33.29213 -32.78350 -31.52572 -30.19048 -28.93189 -27.98998 -26.67026 -25.23329 -24.54404 -23.80039 -21.73663 -21.59574 -21.05187 -20.23979 -19.87332 -18.36623 -17.92106 -17.54042 -16.99840 -16.74446 -16.50621 -16.37307 -16.14206 -15.83407 -15.50174 -15.27851 -15.10304 -14.85746 -14.75401 -14.34109 -14.11233 -13.96488 -13.75402 -13.52938 -13.42050 -13.21187 -13.08601 -13.00074 -12.84534 -12.76586 -12.52960 -12.45195 -12.41306 -12.35004 -12.13581 -11.85608 -11.68330 -11.51843 -10.75274 -10.53869 -10.35352 -10.01884 -9.73430 -9.39690 -9.23646 -8.47648 -5.96125 0.58310 1.22724 1.36309 1.39594 1.45237 1.52508 2.05835 2.19388 2.28367 2.54475 2.94688 3.19618 3.47512 3.55339 3.82277 3.84601 4.02339 4.07450 4.09804 4.23833 4.33359 4.34993 4.37668 4.39766 4.45716 4.52985 4.58235 4.65161 4.70268 4.77205 4.78613 4.79453 4.87615 4.88879 5.01318 5.15825 5.20748 5.34876 5.39570 5.46004 5.76508 5.90669 5.92230 6.13873 6.34837 6.53099 6.60393 6.60672 7.12497 7.37071 7.56256 8.12936 8.69868 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009432 B = 0.002968 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2967.905794 B = 9432.182445 C =11700.648952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.113 3.887 3 N -0.358 5.358 4 C 0.122 3.878 5 C -0.312 4.312 6 C 0.595 3.405 7 O -0.600 6.600 8 N -0.586 5.586 9 C 0.066 3.934 10 C 0.138 3.862 11 H 0.071 0.929 12 C -0.148 4.148 13 C 0.051 3.949 14 N -0.677 5.677 15 C 0.068 3.932 16 C 0.436 3.564 17 O -0.625 6.625 18 N -0.573 5.573 19 C -0.333 4.333 20 H 0.074 0.926 21 C -0.012 4.012 22 N -0.919 5.919 23 Si 0.991 3.009 24 H -0.270 1.270 25 H -0.268 1.268 26 H -0.275 1.275 27 C 0.067 3.933 28 N -0.323 5.323 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.102 0.898 32 H 0.092 0.908 33 H 0.128 0.872 34 H 0.202 0.798 35 H 0.057 0.943 36 H 0.085 0.915 37 H 0.100 0.900 38 H 0.080 0.920 39 H 0.055 0.945 40 H 0.082 0.918 41 H 0.095 0.905 42 H 0.054 0.946 43 H 0.334 0.666 44 H 0.109 0.891 45 H 0.064 0.936 46 H 0.397 0.603 47 H 0.278 0.722 48 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.348 0.290 13.241 24.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.006 4.006 3 N -0.137 5.137 4 C -0.031 4.031 5 C -0.327 4.327 6 C 0.386 3.614 7 O -0.484 6.484 8 N -0.316 5.316 9 C -0.076 4.076 10 C 0.034 3.966 11 H 0.090 0.910 12 C -0.206 4.206 13 C -0.078 4.078 14 N -0.308 5.308 15 C -0.064 4.064 16 C 0.224 3.776 17 O -0.511 6.511 18 N -0.211 5.211 19 C -0.463 4.463 20 H 0.092 0.908 21 C -0.212 4.212 22 N -0.560 5.560 23 Si 0.815 3.185 24 H -0.196 1.196 25 H -0.193 1.193 26 H -0.200 1.200 27 C -0.119 4.119 28 N -0.144 5.144 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.120 0.880 32 H 0.110 0.890 33 H 0.146 0.854 34 H 0.219 0.781 35 H 0.075 0.925 36 H 0.104 0.896 37 H 0.118 0.882 38 H 0.099 0.901 39 H 0.074 0.926 40 H 0.101 0.899 41 H 0.113 0.887 42 H 0.072 0.928 43 H 0.152 0.848 44 H 0.127 0.873 45 H 0.082 0.918 46 H 0.231 0.769 47 H 0.087 0.913 48 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -21.434 -1.369 12.493 24.847 hybrid contribution 2.210 0.396 0.202 2.254 sum -19.225 -0.974 12.695 23.059 Atomic orbital electron populations 1.21995 0.92613 1.04294 1.02510 1.22237 0.97060 0.75385 1.05926 1.48965 1.33762 1.11433 1.19566 1.23280 0.91405 0.93408 0.94972 1.20334 1.12034 0.95989 1.04335 1.17446 0.80583 0.82205 0.81196 1.90683 1.44360 1.79706 1.33611 1.47330 1.34620 1.06835 1.42813 1.22385 0.91458 1.02289 0.91505 1.21138 0.90562 0.90619 0.94242 0.91034 1.22019 1.00964 0.97201 1.00394 1.22493 0.97595 0.92621 0.95109 1.60022 1.36340 1.19704 1.14735 1.21521 0.96451 0.93746 0.94665 1.20985 0.82441 0.90978 0.83194 1.90517 1.65685 1.24077 1.70818 1.41917 1.41960 1.09348 1.27884 1.19615 1.25848 0.89341 1.11489 0.90789 1.26007 0.97418 0.99888 0.97852 1.69663 1.38005 1.18865 1.29514 0.84961 0.77904 0.77599 0.78073 1.19580 1.19276 1.20032 1.25271 0.93412 0.98399 0.94824 1.77085 1.25615 0.97556 1.14097 0.92421 0.92771 0.87978 0.88995 0.85419 0.78084 0.92464 0.89631 0.88199 0.90121 0.92578 0.89894 0.88721 0.92756 0.84842 0.87346 0.91773 0.76914 0.91258 0.76355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.79 10.09 71.98 0.73 -1.06 16 2 C 0.11 1.54 7.21 86.38 0.62 2.16 16 3 N -0.36 -8.14 3.65 -346.29 -1.26 -9.41 16 4 C 0.12 3.04 11.26 84.28 0.95 3.99 16 5 C -0.31 -8.99 5.92 -20.15 -0.12 -9.11 16 6 C 0.59 18.95 7.65 86.66 0.66 19.62 16 7 O -0.60 -23.22 16.26 -4.04 -0.07 -23.28 16 8 N -0.59 -14.56 2.49 -826.47 -2.05 -16.61 16 9 C 0.07 1.15 7.77 127.77 0.99 2.14 16 10 C 0.14 3.11 2.87 44.99 0.13 3.24 16 11 H 0.07 2.04 6.92 -2.39 -0.02 2.03 16 12 C -0.15 -2.15 9.18 71.98 0.66 -1.49 16 13 C 0.05 1.14 4.98 86.30 0.43 1.57 16 14 N -0.68 -22.34 5.85 -517.94 -3.03 -25.36 16 15 C 0.07 2.38 6.17 85.56 0.53 2.91 16 16 C 0.44 21.56 7.82 87.66 0.69 22.24 16 17 O -0.62 -36.62 15.78 -3.08 -0.05 -36.67 16 18 N -0.57 -30.23 5.29 -306.99 -1.62 -31.86 16 19 C -0.33 -19.51 9.68 84.04 0.81 -18.70 16 20 H 0.07 4.67 7.16 -2.91 -0.02 4.65 16 21 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 22 N -0.92 -50.29 13.05 21.66 0.28 -50.01 16 23 Si 0.99 43.99 29.55 68.60 2.03 46.01 16 24 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 25 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 26 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 27 C 0.07 1.75 9.87 85.65 0.85 2.59 16 28 N -0.32 -8.70 12.33 -56.28 -0.69 -9.39 16 29 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 33 H 0.13 0.97 8.06 -2.39 -0.02 0.95 16 34 H 0.20 4.06 8.06 -2.91 -0.02 4.04 16 35 H 0.06 1.15 7.27 -2.39 -0.02 1.13 16 36 H 0.09 1.33 5.43 -2.39 -0.01 1.31 16 37 H 0.10 1.14 6.44 -2.39 -0.02 1.13 16 38 H 0.08 0.86 6.67 -2.39 -0.02 0.84 16 39 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.09 1.74 7.84 -2.38 -0.02 1.72 16 42 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.33 12.90 8.43 -89.70 -0.76 12.14 16 44 H 0.11 3.28 8.14 -2.39 -0.02 3.26 16 45 H 0.06 1.96 8.14 -2.39 -0.02 1.95 16 46 H 0.40 19.68 7.90 -92.71 -0.73 18.94 16 47 H 0.28 14.19 8.31 -92.71 -0.77 13.42 16 48 H 0.22 4.54 4.51 -2.91 -0.01 4.53 16 Total: -1.00 -82.93 397.79 1.44 -81.49 By element: Atomic # 1 Polarization: 45.64 SS G_CDS: -0.49 Total: 45.16 kcal Atomic # 6 Polarization: 21.55 SS G_CDS: 8.39 Total: 29.94 kcal Atomic # 7 Polarization: -134.26 SS G_CDS: -8.38 Total: -142.64 kcal Atomic # 8 Polarization: -59.84 SS G_CDS: -0.11 Total: -59.96 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.01 kcal Total: -82.93 1.44 -81.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319435521.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.209 kcal (2) G-P(sol) polarization free energy of solvation -82.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds