Wall clock time and date at job start Tue Mar 31 2020 19:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.46899 * 2 1 4 4 C 1.52994 * 109.47019 * 120.00199 * 2 1 3 5 5 C 1.53006 * 109.46829 * 184.99752 * 4 2 1 6 6 N 1.46899 * 109.46748 * 179.97438 * 5 4 2 7 7 C 1.46902 * 111.00111 * 66.04942 * 6 5 4 8 8 C 1.46906 * 110.99896 * 190.00253 * 6 5 4 9 9 N 1.46505 * 109.47006 * 240.00085 * 2 1 3 10 10 C 1.34777 * 119.99725 * 84.99705 * 9 2 1 11 11 O 1.21363 * 120.00411 * 0.02562 * 10 9 2 12 12 C 1.49346 * 119.99974 * 179.72256 * 10 9 2 13 13 O 1.21393 * 119.99573 * 0.28167 * 12 10 9 14 14 N 1.34769 * 120.00168 * 180.27495 * 12 10 9 15 15 C 1.39934 * 119.99876 * 179.97438 * 14 12 10 16 16 C 1.40458 * 125.97962 * 359.72455 * 15 14 12 17 17 C 1.35222 * 107.86588 * 179.86153 * 16 15 14 18 18 N 1.34991 * 107.87463 * 0.38856 * 17 16 15 19 19 C 1.46495 * 125.96767 * 179.72643 * 18 17 16 20 20 C 1.50706 * 109.46989 * 125.00664 * 19 18 17 21 21 H 1.08005 * 119.99364 * 359.97438 * 20 19 18 22 22 C 1.37875 * 120.00407 * 179.97438 * 20 19 18 23 23 N 1.31513 * 119.99708 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00182 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46838 * 90.00390 * 24 22 20 26 26 H 1.48499 * 109.47046 * 210.00294 * 24 22 20 27 27 H 1.48495 * 109.46876 * 330.00100 * 24 22 20 28 28 N 1.31271 * 125.97792 * 180.02562 * 15 14 12 29 29 H 1.09003 * 109.46937 * 299.99956 * 1 2 3 30 30 H 1.08998 * 109.47131 * 59.99895 * 1 2 3 31 31 H 1.08994 * 109.47191 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47152 * 304.99753 * 4 2 1 33 33 H 1.09001 * 109.47542 * 65.00115 * 4 2 1 34 34 H 1.09000 * 109.47254 * 299.99938 * 5 4 2 35 35 H 1.09001 * 109.46661 * 60.00431 * 5 4 2 36 36 H 1.09001 * 109.46815 * 59.99698 * 7 6 5 37 37 H 1.09001 * 109.46704 * 179.97438 * 7 6 5 38 38 H 1.08998 * 109.47142 * 299.99836 * 7 6 5 39 39 H 1.09003 * 109.47306 * 59.99687 * 8 6 5 40 40 H 1.09003 * 109.47401 * 180.02562 * 8 6 5 41 41 H 1.09007 * 109.46945 * 300.00045 * 8 6 5 42 42 H 0.97001 * 119.99790 * 265.00446 * 9 2 1 43 43 H 0.97001 * 120.00353 * 0.02562 * 14 12 10 44 44 H 1.07994 * 126.06778 * 359.97438 * 16 15 14 45 45 H 1.07998 * 126.05913 * 180.14363 * 17 16 15 46 46 H 1.09000 * 109.47489 * 245.00246 * 19 18 17 47 47 H 1.08999 * 109.47462 * 5.00654 * 19 18 17 48 48 H 0.96999 * 120.00000 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.6133 1.3135 6 7 4.0545 -1.3053 2.5133 7 6 3.8099 -2.7511 2.4238 8 6 5.4789 -1.0253 2.7381 9 7 2.0184 -0.6906 -1.1962 10 6 2.1470 -0.0182 -2.3572 11 8 1.8588 1.1594 -2.4116 12 6 2.6507 -0.7206 -3.5751 13 8 2.9393 -1.8985 -3.5206 14 7 2.7846 -0.0469 -4.7346 15 6 3.2570 -0.7050 -5.8756 16 6 3.6319 -2.0565 -5.9530 17 6 4.0272 -2.3053 -7.2219 18 7 3.9174 -1.1569 -7.9229 19 6 4.2480 -0.9782 -9.3388 20 6 3.0547 -0.4139 -10.0660 21 1 2.1412 -0.2094 -9.5272 22 6 3.1290 -0.1588 -11.4189 23 7 4.2415 -0.4074 -12.0747 24 14 1.6496 0.5400 -12.3203 25 1 1.7067 2.0236 -12.2896 26 1 1.6630 0.0730 -13.7299 27 1 0.4032 0.0787 -11.6578 28 7 3.4326 -0.1660 -7.0596 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6054 -0.2618 2.1369 33 1 1.7517 -1.7716 1.2055 34 1 3.9995 -1.0728 0.4258 35 1 3.8532 0.4370 1.3573 36 1 4.3268 -3.1537 1.5526 37 1 4.1824 -3.2390 3.3245 38 1 2.7396 -2.9333 2.3276 39 1 5.6219 0.0472 2.8704 40 1 5.8158 -1.5501 3.6321 41 1 6.0562 -1.3654 1.8784 42 1 2.2490 -1.6318 -1.1527 43 1 2.5542 0.8943 -4.7781 44 1 3.6069 -2.7706 -5.1432 45 1 4.3736 -3.2536 -7.6054 46 1 5.0886 -0.2904 -9.4317 47 1 4.5166 -1.9409 -9.7736 48 1 4.2937 -0.2282 -13.0266 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319536718.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:06 Heat of formation + Delta-G solvation = 17.406542 kcal Electronic energy + Delta-G solvation = -28428.746713 eV Core-core repulsion = 24328.029056 eV Total energy + Delta-G solvation = -4100.717657 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.14534 -40.31474 -38.87132 -38.08845 -36.29225 -34.93949 -33.39079 -32.13751 -31.05892 -29.67799 -29.43940 -28.01258 -27.07534 -25.59959 -24.86439 -22.99636 -22.01152 -21.40134 -20.97721 -20.45030 -19.72422 -18.34140 -17.18779 -16.63813 -16.55800 -16.24859 -16.00940 -15.74163 -15.53949 -15.34624 -15.05418 -14.56592 -14.39539 -14.10799 -13.92986 -13.79881 -13.50336 -13.04879 -12.98167 -12.76947 -12.54517 -12.43259 -12.31461 -12.23203 -12.11578 -11.91217 -11.69583 -11.57979 -11.36123 -11.14601 -11.06533 -10.89409 -10.55816 -10.28849 -10.05856 -9.61705 -9.57868 -9.54579 -8.81644 -8.66171 -8.25511 -7.60602 -6.27265 -4.32488 1.17465 2.03038 2.63831 3.00618 3.16500 3.23048 3.28888 3.34364 3.44565 3.63908 3.82797 4.27498 4.31022 4.37642 4.49440 4.60672 4.75189 4.87396 4.97705 5.02731 5.08121 5.14507 5.18658 5.21029 5.30309 5.40323 5.44478 5.46661 5.48296 5.56996 5.67586 5.68982 5.84837 6.00658 6.07904 6.29249 6.38630 6.54561 6.55197 6.77075 6.87604 7.00177 7.21868 7.33908 7.60102 7.67459 7.83094 7.92782 7.95588 8.51761 8.76029 9.33469 10.81545 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.021057 B = 0.001938 C = 0.001835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.430741 B =14445.030951 C =15258.582479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.141 3.859 3 H 0.095 0.905 4 C -0.124 4.124 5 C 0.050 3.950 6 N -0.548 5.548 7 C 0.018 3.982 8 C 0.023 3.977 9 N -0.696 5.696 10 C 0.517 3.483 11 O -0.514 6.514 12 C 0.511 3.489 13 O -0.501 6.501 14 N -0.598 5.598 15 C 0.250 3.750 16 C -0.286 4.286 17 C 0.053 3.947 18 N -0.314 5.314 19 C 0.257 3.743 20 C -0.530 4.530 21 H 0.069 0.931 22 C 0.062 3.938 23 N -0.895 5.895 24 Si 0.909 3.091 25 H -0.277 1.277 26 H -0.284 1.284 27 H -0.272 1.272 28 N -0.294 5.294 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.091 0.909 33 H 0.072 0.928 34 H 0.039 0.961 35 H 0.076 0.924 36 H 0.028 0.972 37 H 0.067 0.933 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.027 0.973 42 H 0.412 0.588 43 H 0.423 0.577 44 H 0.161 0.839 45 H 0.170 0.830 46 H 0.047 0.953 47 H 0.059 0.941 48 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.915 -3.653 28.934 29.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.036 3.964 3 H 0.113 0.887 4 C -0.162 4.162 5 C -0.078 4.078 6 N -0.271 5.271 7 C -0.130 4.130 8 C -0.126 4.126 9 N -0.351 5.351 10 C 0.297 3.703 11 O -0.389 6.389 12 C 0.291 3.709 13 O -0.374 6.374 14 N -0.246 5.246 15 C -0.003 4.003 16 C -0.317 4.317 17 C -0.097 4.097 18 N -0.096 5.096 19 C 0.140 3.860 20 C -0.568 4.568 21 H 0.087 0.913 22 C -0.141 4.141 23 N -0.533 5.533 24 Si 0.736 3.264 25 H -0.203 1.203 26 H -0.210 1.210 27 H -0.197 1.197 28 N -0.125 5.125 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.110 0.890 33 H 0.091 0.909 34 H 0.057 0.943 35 H 0.095 0.905 36 H 0.047 0.953 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.045 0.955 42 H 0.248 0.752 43 H 0.261 0.739 44 H 0.178 0.822 45 H 0.188 0.812 46 H 0.065 0.935 47 H 0.076 0.924 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.143 -2.370 28.350 28.529 hybrid contribution -0.157 -0.676 -0.951 1.177 sum -2.299 -3.045 27.399 27.664 Atomic orbital electron populations 1.22182 0.94376 1.02636 1.03094 1.21127 0.94632 0.97762 0.82843 0.88698 1.21930 0.95350 1.01610 0.97295 1.22207 0.95149 0.99564 0.90914 1.62016 1.17535 1.09666 1.37916 1.22473 1.02050 0.87631 1.00857 1.22394 0.87391 1.02116 1.00654 1.45862 1.65563 1.14936 1.08706 1.19890 0.79076 0.86881 0.84427 1.90793 1.48335 1.15153 1.84623 1.19967 0.79995 0.86997 0.83949 1.90707 1.47537 1.14991 1.84182 1.42003 1.61707 1.14610 1.06304 1.19015 1.02075 0.92156 0.87016 1.21507 1.16331 0.95600 0.98269 1.22584 1.02087 0.92844 0.92155 1.49173 1.45245 1.04631 1.10558 1.19803 0.97897 0.99345 0.68991 1.21248 0.98542 1.43705 0.93351 0.91251 1.24945 0.96766 0.95177 0.97164 1.69914 1.26044 1.47730 1.09595 0.86310 0.82219 0.79379 0.78507 1.20283 1.20967 1.19706 1.77410 1.22577 1.14410 0.98148 0.91094 0.91668 0.92108 0.89008 0.90907 0.94263 0.90507 0.95349 0.91410 0.91020 0.91276 0.91299 0.95464 0.75169 0.73946 0.82199 0.81234 0.93540 0.92362 0.92283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.09 9.48 37.16 0.35 -0.73 16 2 C 0.14 0.98 2.57 -67.93 -0.17 0.80 16 3 H 0.09 0.76 7.58 -51.93 -0.39 0.37 16 4 C -0.12 -0.66 4.68 -26.73 -0.13 -0.79 16 5 C 0.05 0.33 4.84 -3.82 -0.02 0.31 16 6 N -0.55 -3.70 5.02 -251.24 -1.26 -4.96 16 7 C 0.02 0.10 9.32 60.07 0.56 0.66 16 8 C 0.02 0.14 9.57 60.07 0.57 0.71 16 9 N -0.70 -6.03 4.52 -54.27 -0.25 -6.28 16 10 C 0.52 6.19 7.85 -11.63 -0.09 6.10 16 11 O -0.51 -7.13 16.14 5.49 0.09 -7.05 16 12 C 0.51 7.34 7.85 -11.64 -0.09 7.24 16 13 O -0.50 -7.74 13.60 5.46 0.07 -7.66 16 14 N -0.60 -9.70 5.43 -11.58 -0.06 -9.76 16 15 C 0.25 4.96 8.10 -154.55 -1.25 3.71 16 16 C -0.29 -5.41 9.60 -39.82 -0.38 -5.79 16 17 C 0.05 1.03 11.43 -17.24 -0.20 0.83 16 18 N -0.31 -7.16 3.67 -62.56 -0.23 -7.39 16 19 C 0.26 6.43 6.26 -5.19 -0.03 6.39 16 20 C -0.53 -14.63 9.24 -34.44 -0.32 -14.95 16 21 H 0.07 1.99 7.81 -52.48 -0.41 1.58 16 22 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 23 N -0.89 -25.11 13.29 55.43 0.74 -24.38 16 24 Si 0.91 21.33 29.54 -169.99 -5.02 16.31 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 27 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 28 N -0.29 -6.73 12.42 31.41 0.39 -6.34 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.35 6.55 -51.93 -0.34 0.01 16 34 H 0.04 0.30 7.73 -51.93 -0.40 -0.11 16 35 H 0.08 0.52 8.06 -51.93 -0.42 0.10 16 36 H 0.03 0.17 8.14 -51.93 -0.42 -0.25 16 37 H 0.07 0.35 8.12 -51.93 -0.42 -0.07 16 38 H 0.07 0.36 6.47 -51.93 -0.34 0.02 16 39 H 0.07 0.39 8.12 -51.93 -0.42 -0.03 16 40 H 0.07 0.36 8.12 -51.93 -0.42 -0.06 16 41 H 0.03 0.18 8.14 -51.93 -0.42 -0.25 16 42 H 0.41 3.17 8.07 -40.82 -0.33 2.84 16 43 H 0.42 6.31 8.29 -40.82 -0.34 5.97 16 44 H 0.16 2.83 5.91 -52.49 -0.31 2.52 16 45 H 0.17 2.61 8.06 -52.49 -0.42 2.18 16 46 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 47 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 48 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 403.50 15.07 6.08 6.08 Total: -1.00 -31.80 403.50 -8.22 -40.02 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -7.48 Total: 5.30 kcal Atomic # 6 Polarization: 7.40 SS G_CDS: -1.29 Total: 6.11 kcal Atomic # 7 Polarization: -58.44 SS G_CDS: -0.67 Total: -59.12 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: 0.16 Total: -14.71 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -31.80 -8.22 -40.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319536718.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.431 kcal (2) G-P(sol) polarization free energy of solvation -31.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds