Wall clock time and date at job start Tue Mar 31 2020 19:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.46899 * 2 1 4 4 C 1.52994 * 109.47019 * 120.00199 * 2 1 3 5 5 C 1.53006 * 109.46829 * 184.99752 * 4 2 1 6 6 N 1.46899 * 109.46748 * 179.97438 * 5 4 2 7 7 C 1.46902 * 111.00111 * 66.04942 * 6 5 4 8 8 C 1.46906 * 110.99896 * 190.00253 * 6 5 4 9 9 N 1.46505 * 109.47006 * 240.00085 * 2 1 3 10 10 C 1.34777 * 119.99725 * 84.99705 * 9 2 1 11 11 O 1.21363 * 120.00411 * 0.02562 * 10 9 2 12 12 C 1.49346 * 119.99974 * 179.72256 * 10 9 2 13 13 O 1.21393 * 119.99573 * 0.28167 * 12 10 9 14 14 N 1.34769 * 120.00168 * 180.27495 * 12 10 9 15 15 C 1.39934 * 119.99876 * 179.97438 * 14 12 10 16 16 C 1.40458 * 125.97962 * 359.72455 * 15 14 12 17 17 C 1.35222 * 107.86588 * 179.86153 * 16 15 14 18 18 N 1.34991 * 107.87463 * 0.38856 * 17 16 15 19 19 C 1.46495 * 125.96767 * 179.72643 * 18 17 16 20 20 C 1.50706 * 109.46989 * 125.00664 * 19 18 17 21 21 H 1.08005 * 119.99364 * 359.97438 * 20 19 18 22 22 C 1.37875 * 120.00407 * 179.97438 * 20 19 18 23 23 N 1.31513 * 119.99708 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00182 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46838 * 90.00390 * 24 22 20 26 26 H 1.48499 * 109.47046 * 210.00294 * 24 22 20 27 27 H 1.48495 * 109.46876 * 330.00100 * 24 22 20 28 28 N 1.31271 * 125.97792 * 180.02562 * 15 14 12 29 29 H 1.09003 * 109.46937 * 299.99956 * 1 2 3 30 30 H 1.08998 * 109.47131 * 59.99895 * 1 2 3 31 31 H 1.08994 * 109.47191 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47152 * 304.99753 * 4 2 1 33 33 H 1.09001 * 109.47542 * 65.00115 * 4 2 1 34 34 H 1.09000 * 109.47254 * 299.99938 * 5 4 2 35 35 H 1.09001 * 109.46661 * 60.00431 * 5 4 2 36 36 H 1.09001 * 109.46815 * 59.99698 * 7 6 5 37 37 H 1.09001 * 109.46704 * 179.97438 * 7 6 5 38 38 H 1.08998 * 109.47142 * 299.99836 * 7 6 5 39 39 H 1.09003 * 109.47306 * 59.99687 * 8 6 5 40 40 H 1.09003 * 109.47401 * 180.02562 * 8 6 5 41 41 H 1.09007 * 109.46945 * 300.00045 * 8 6 5 42 42 H 0.97001 * 119.99790 * 265.00446 * 9 2 1 43 43 H 0.97001 * 120.00353 * 0.02562 * 14 12 10 44 44 H 1.07994 * 126.06778 * 359.97438 * 16 15 14 45 45 H 1.07998 * 126.05913 * 180.14363 * 17 16 15 46 46 H 1.09000 * 109.47489 * 245.00246 * 19 18 17 47 47 H 1.08999 * 109.47462 * 5.00654 * 19 18 17 48 48 H 0.96999 * 120.00000 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.6133 1.3135 6 7 4.0545 -1.3053 2.5133 7 6 3.8099 -2.7511 2.4238 8 6 5.4789 -1.0253 2.7381 9 7 2.0184 -0.6906 -1.1962 10 6 2.1470 -0.0182 -2.3572 11 8 1.8588 1.1594 -2.4116 12 6 2.6507 -0.7206 -3.5751 13 8 2.9393 -1.8985 -3.5206 14 7 2.7846 -0.0469 -4.7346 15 6 3.2570 -0.7050 -5.8756 16 6 3.6319 -2.0565 -5.9530 17 6 4.0272 -2.3053 -7.2219 18 7 3.9174 -1.1569 -7.9229 19 6 4.2480 -0.9782 -9.3388 20 6 3.0547 -0.4139 -10.0660 21 1 2.1412 -0.2094 -9.5272 22 6 3.1290 -0.1588 -11.4189 23 7 4.2415 -0.4074 -12.0747 24 14 1.6496 0.5400 -12.3203 25 1 1.7067 2.0236 -12.2896 26 1 1.6630 0.0730 -13.7299 27 1 0.4032 0.0787 -11.6578 28 7 3.4326 -0.1660 -7.0596 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6054 -0.2618 2.1369 33 1 1.7517 -1.7716 1.2055 34 1 3.9995 -1.0728 0.4258 35 1 3.8532 0.4370 1.3573 36 1 4.3268 -3.1537 1.5526 37 1 4.1824 -3.2390 3.3245 38 1 2.7396 -2.9333 2.3276 39 1 5.6219 0.0472 2.8704 40 1 5.8158 -1.5501 3.6321 41 1 6.0562 -1.3654 1.8784 42 1 2.2490 -1.6318 -1.1527 43 1 2.5542 0.8943 -4.7781 44 1 3.6069 -2.7706 -5.1432 45 1 4.3736 -3.2536 -7.6054 46 1 5.0886 -0.2904 -9.4317 47 1 4.5166 -1.9409 -9.7736 48 1 4.2937 -0.2282 -13.0266 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319536718.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:06 Heat of formation + Delta-G solvation = -5.291801 kcal Electronic energy + Delta-G solvation = -28429.730987 eV Core-core repulsion = 24328.029056 eV Total energy + Delta-G solvation = -4101.701931 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.46806 -41.58759 -39.92663 -38.77021 -37.08595 -36.30009 -35.30480 -32.87931 -32.84549 -31.03501 -30.21617 -28.83636 -28.46363 -26.79054 -25.54073 -24.71914 -23.02751 -22.28277 -21.85342 -21.63737 -21.05375 -19.49268 -18.71537 -18.27607 -17.90917 -17.23913 -17.02654 -16.86210 -16.33092 -16.21539 -16.12622 -15.84238 -15.75621 -15.26611 -15.08510 -14.62060 -14.44872 -14.26019 -14.06789 -13.88804 -13.75823 -13.65461 -13.23529 -13.11316 -13.00557 -12.80896 -12.70035 -12.62252 -12.53954 -12.32130 -12.21632 -12.14735 -11.90948 -11.67294 -11.63162 -11.44242 -10.78890 -10.73191 -10.37408 -9.84988 -9.32960 -9.23227 -8.34761 -6.48250 0.04342 0.86296 1.12696 1.37321 1.38747 1.49543 1.73741 1.84038 2.25219 2.33318 2.59349 2.95806 2.97616 3.24319 3.79971 3.89924 3.96314 4.10675 4.20902 4.27923 4.35851 4.46701 4.53100 4.62086 4.64998 4.70581 4.72833 4.79564 4.82285 4.87029 4.91694 4.94690 4.98476 5.01104 5.01689 5.06286 5.21578 5.29928 5.36171 5.55043 5.73802 5.77208 5.85305 6.05418 6.07399 6.16135 6.24242 6.55837 6.63000 6.79457 6.95199 7.21671 8.73098 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.021057 B = 0.001938 C = 0.001835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.430741 B =14445.030951 C =15258.582479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.141 3.859 3 H 0.086 0.914 4 C -0.111 4.111 5 C 0.049 3.951 6 N -0.555 5.555 7 C 0.017 3.983 8 C 0.021 3.979 9 N -0.677 5.677 10 C 0.525 3.475 11 O -0.535 6.535 12 C 0.515 3.485 13 O -0.508 6.508 14 N -0.601 5.601 15 C 0.258 3.742 16 C -0.288 4.288 17 C 0.060 3.940 18 N -0.339 5.339 19 C 0.271 3.729 20 C -0.549 4.549 21 H 0.052 0.948 22 C 0.019 3.981 23 N -0.919 5.919 24 Si 0.970 3.030 25 H -0.274 1.274 26 H -0.271 1.271 27 H -0.273 1.273 28 N -0.341 5.341 29 H 0.089 0.911 30 H 0.042 0.958 31 H 0.069 0.931 32 H 0.104 0.896 33 H 0.084 0.916 34 H 0.028 0.972 35 H 0.072 0.928 36 H 0.022 0.978 37 H 0.073 0.927 38 H 0.081 0.919 39 H 0.070 0.930 40 H 0.077 0.923 41 H 0.020 0.980 42 H 0.419 0.581 43 H 0.428 0.572 44 H 0.176 0.824 45 H 0.207 0.793 46 H 0.023 0.977 47 H 0.063 0.937 48 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.962 -4.549 30.680 31.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.037 3.963 3 H 0.104 0.896 4 C -0.149 4.149 5 C -0.079 4.079 6 N -0.278 5.278 7 C -0.131 4.131 8 C -0.127 4.127 9 N -0.331 5.331 10 C 0.304 3.696 11 O -0.412 6.412 12 C 0.296 3.704 13 O -0.381 6.381 14 N -0.251 5.251 15 C 0.004 3.996 16 C -0.318 4.318 17 C -0.088 4.088 18 N -0.122 5.122 19 C 0.152 3.848 20 C -0.587 4.587 21 H 0.070 0.930 22 C -0.181 4.181 23 N -0.557 5.557 24 Si 0.795 3.205 25 H -0.200 1.200 26 H -0.196 1.196 27 H -0.198 1.198 28 N -0.173 5.173 29 H 0.108 0.892 30 H 0.062 0.938 31 H 0.088 0.912 32 H 0.122 0.878 33 H 0.102 0.898 34 H 0.046 0.954 35 H 0.090 0.910 36 H 0.040 0.960 37 H 0.092 0.908 38 H 0.100 0.900 39 H 0.089 0.911 40 H 0.096 0.904 41 H 0.038 0.962 42 H 0.257 0.743 43 H 0.266 0.734 44 H 0.193 0.807 45 H 0.224 0.776 46 H 0.041 0.959 47 H 0.081 0.919 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.189 -3.296 30.153 30.500 hybrid contribution 0.190 -0.451 -1.308 1.396 sum -2.999 -3.746 28.846 29.242 Atomic orbital electron populations 1.22159 0.93614 1.03209 1.02964 1.21284 0.95115 0.97376 0.82486 0.89615 1.21845 0.94362 1.02134 0.96581 1.22201 0.95930 0.99213 0.90524 1.62054 1.17772 1.10267 1.37749 1.22524 1.02667 0.87031 1.00902 1.22428 0.87166 1.02368 1.00741 1.45893 1.63923 1.15187 1.08093 1.19430 0.79317 0.86476 0.84362 1.90798 1.49718 1.15879 1.84777 1.20454 0.79034 0.86901 0.84023 1.90684 1.47633 1.15454 1.84368 1.42136 1.62027 1.14963 1.05928 1.19338 1.00426 0.92726 0.87133 1.21747 1.16111 0.95410 0.98578 1.23254 1.00543 0.93092 0.91929 1.48914 1.47297 1.05879 1.10063 1.19393 0.96220 0.98663 0.70485 1.21396 0.98768 1.44516 0.93999 0.93018 1.25715 0.99405 0.95243 0.97766 1.69984 1.27519 1.48168 1.10078 0.85364 0.78796 0.78639 0.77719 1.19965 1.19578 1.19785 1.77323 1.24843 1.15654 0.99442 0.89212 0.93834 0.91167 0.87807 0.89775 0.95400 0.90985 0.95981 0.90808 0.90029 0.91124 0.90448 0.96158 0.74320 0.73423 0.80666 0.77618 0.95928 0.91887 0.91811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.79 9.48 71.98 0.68 -1.11 16 2 C 0.14 1.70 2.57 44.99 0.12 1.81 16 3 H 0.09 1.27 7.58 -2.39 -0.02 1.25 16 4 C -0.11 -0.92 4.68 30.59 0.14 -0.77 16 5 C 0.05 0.57 4.84 86.31 0.42 0.99 16 6 N -0.55 -6.59 5.02 -948.79 -4.76 -11.35 16 7 C 0.02 0.16 9.32 127.69 1.19 1.35 16 8 C 0.02 0.24 9.57 127.69 1.22 1.46 16 9 N -0.68 -10.67 4.52 -443.95 -2.01 -12.68 16 10 C 0.52 12.08 7.85 87.24 0.68 12.76 16 11 O -0.53 -14.58 16.14 -3.29 -0.05 -14.64 16 12 C 0.51 14.34 7.85 87.24 0.69 15.03 16 13 O -0.51 -14.95 13.60 -3.38 -0.05 -15.00 16 14 N -0.60 -19.43 5.43 -308.89 -1.68 -21.11 16 15 C 0.26 10.23 8.10 133.40 1.08 11.31 16 16 C -0.29 -10.60 9.60 22.12 0.21 -10.39 16 17 C 0.06 2.27 11.43 83.51 0.95 3.22 16 18 N -0.34 -15.68 3.67 -351.84 -1.29 -16.97 16 19 C 0.27 13.89 6.26 85.64 0.54 14.42 16 20 C -0.55 -30.88 9.24 25.60 0.24 -30.64 16 21 H 0.05 3.04 7.81 -2.91 -0.02 3.01 16 22 C 0.02 1.06 5.46 84.65 0.46 1.53 16 23 N -0.92 -51.80 13.29 21.45 0.28 -51.52 16 24 Si 0.97 43.76 29.54 68.60 2.03 45.79 16 25 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 26 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 27 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 28 N -0.34 -15.96 12.42 -54.54 -0.68 -16.64 16 29 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.04 0.69 8.14 -2.39 -0.02 0.68 16 31 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.08 0.55 6.55 -2.39 -0.02 0.53 16 34 H 0.03 0.38 7.73 -2.39 -0.02 0.37 16 35 H 0.07 0.90 8.06 -2.39 -0.02 0.88 16 36 H 0.02 0.24 8.14 -2.39 -0.02 0.22 16 37 H 0.07 0.62 8.12 -2.39 -0.02 0.60 16 38 H 0.08 0.61 6.47 -2.39 -0.02 0.59 16 39 H 0.07 0.74 8.12 -2.39 -0.02 0.72 16 40 H 0.08 0.71 8.12 -2.39 -0.02 0.69 16 41 H 0.02 0.25 8.14 -2.38 -0.02 0.23 16 42 H 0.42 5.60 8.07 -92.71 -0.75 4.85 16 43 H 0.43 12.92 8.29 -92.71 -0.77 12.16 16 44 H 0.18 5.88 5.91 -2.91 -0.02 5.87 16 45 H 0.21 5.89 8.06 -2.91 -0.02 5.87 16 46 H 0.02 1.25 8.14 -2.39 -0.02 1.23 16 47 H 0.06 3.12 8.07 -2.39 -0.02 3.10 16 48 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 Total: -1.00 -68.44 403.50 -0.11 -68.55 By element: Atomic # 1 Polarization: 25.13 SS G_CDS: -0.53 Total: 24.60 kcal Atomic # 6 Polarization: 12.35 SS G_CDS: 8.63 Total: 20.98 kcal Atomic # 7 Polarization: -120.14 SS G_CDS: -10.13 Total: -130.27 kcal Atomic # 8 Polarization: -29.54 SS G_CDS: -0.10 Total: -29.64 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -68.44 -0.11 -68.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319536718.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.255 kcal (2) G-P(sol) polarization free energy of solvation -68.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds