Wall clock time and date at job start Tue Mar 31 2020 20:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.47233 * 2 1 4 4 C 1.53001 * 109.47394 * 240.00248 * 2 1 3 5 5 N 1.46498 * 109.47346 * 184.99956 * 4 2 1 6 6 C 1.36937 * 119.99925 * 180.02562 * 5 4 2 7 7 H 1.07996 * 119.99958 * 359.97438 * 6 5 4 8 8 C 1.38809 * 119.99737 * 180.02562 * 6 5 4 9 9 N 1.31621 * 120.00381 * 359.97438 * 8 6 5 10 10 Si 1.86807 * 119.99884 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47167 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47133 * 119.99701 * 10 8 6 13 13 H 1.48501 * 109.46923 * 239.99649 * 10 8 6 14 14 N 1.46500 * 109.46962 * 120.00173 * 2 1 3 15 15 C 1.46496 * 120.00022 * 60.00342 * 14 2 1 16 16 C 1.34774 * 120.00142 * 239.99584 * 14 2 1 17 17 O 1.21601 * 119.99696 * 3.34707 * 16 14 2 18 18 C 1.47524 * 120.00265 * 183.33606 * 16 14 2 19 19 C 1.36594 * 125.76944 * 173.47632 * 18 16 14 20 20 N 1.34813 * 106.83736 * 179.97438 * 19 18 16 21 21 C 1.46500 * 126.59344 * 179.97438 * 20 19 18 22 22 C 1.53175 * 109.54576 * 34.84337 * 21 20 19 23 23 C 1.53106 * 109.16136 * 183.23933 * 22 21 20 24 24 O 1.42904 * 109.48567 * 57.47331 * 23 22 21 25 25 C 1.42908 * 114.09988 * 298.89220 * 24 23 22 26 26 C 1.53099 * 109.41541 * 61.15524 * 25 24 23 27 27 N 1.40208 * 106.81046 * 0.02562 * 20 19 18 28 28 N 1.28754 * 108.37159 * 359.97438 * 27 20 19 29 29 H 1.09003 * 109.46783 * 59.99739 * 1 2 3 30 30 H 1.09004 * 109.46868 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47140 * 299.99563 * 1 2 3 32 32 H 1.09001 * 109.47006 * 305.00429 * 4 2 1 33 33 H 1.08999 * 109.46977 * 64.99696 * 4 2 1 34 34 H 0.96998 * 119.99582 * 0.02562 * 5 4 2 35 35 H 0.97002 * 120.00561 * 179.97438 * 9 8 6 36 36 H 1.08999 * 109.46885 * 264.10178 * 15 14 2 37 37 H 1.09004 * 109.47047 * 24.10398 * 15 14 2 38 38 H 1.09003 * 109.47289 * 144.10235 * 15 14 2 39 39 H 1.08004 * 126.58158 * 359.93891 * 19 18 16 40 40 H 1.08999 * 109.54068 * 155.02277 * 21 20 19 41 41 H 1.09003 * 109.51882 * 303.05972 * 22 21 20 42 42 H 1.09000 * 109.51970 * 63.24252 * 22 21 20 43 43 H 1.08997 * 109.40688 * 297.49643 * 23 22 21 44 44 H 1.08993 * 109.48589 * 177.49911 * 23 22 21 45 45 H 1.09001 * 109.47952 * 301.17799 * 25 24 23 46 46 H 1.09000 * 109.48037 * 181.13797 * 25 24 23 47 47 H 1.08995 * 109.52384 * 182.48585 * 26 25 24 48 48 H 1.09003 * 109.57077 * 62.32954 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 7 3.5001 -0.8263 -1.1906 6 6 4.1839 -1.4378 -2.2073 7 1 3.6469 -1.8429 -3.0521 8 6 5.5673 -1.5378 -2.1514 9 7 6.2218 -1.0445 -1.1215 10 14 6.5003 -2.3714 -3.5386 11 1 5.5400 -2.8369 -4.5713 12 1 7.4512 -1.4059 -4.1458 13 1 7.2512 -3.5344 -3.0013 14 7 2.0183 -0.6907 1.1962 15 6 1.6644 -2.0932 1.4279 16 6 2.7932 -0.0358 2.0833 17 8 3.0369 1.1447 1.9226 18 6 3.3455 -0.7509 3.2495 19 6 4.2397 -0.2421 4.1480 20 7 4.4818 -1.2136 5.0508 21 6 5.3795 -1.1289 6.2054 22 6 5.3445 0.2911 6.7787 23 6 6.3452 0.3918 7.9331 24 8 7.6497 0.0436 7.4649 25 6 7.7526 -1.2902 6.9622 26 6 6.8101 -1.4578 5.7674 27 7 3.7100 -2.3210 4.6716 28 7 3.0538 -2.0131 3.6075 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.6054 -1.7197 -1.2953 33 1 1.7517 -0.1582 -2.1369 34 1 3.9824 -0.4627 -0.4316 35 1 7.1885 -1.1148 -1.0822 36 1 0.7974 -2.1451 2.0864 37 1 1.4275 -2.5701 0.4768 38 1 2.5052 -2.6080 1.8930 39 1 4.6706 0.7482 4.1370 40 1 5.0598 -1.8383 6.9687 41 1 5.6150 1.0048 6.0004 42 1 4.3416 0.5118 7.1439 43 1 6.0502 -0.2921 8.7288 44 1 6.3569 1.4121 8.3161 45 1 7.4758 -1.9961 7.7452 46 1 8.7780 -1.4813 6.6459 47 1 6.8542 -2.4866 5.4101 48 1 7.1107 -0.7812 4.9674 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319560163.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:37 Heat of formation + Delta-G solvation = 42.815083 kcal Electronic energy + Delta-G solvation = -30222.198293 eV Core-core repulsion = 26122.582433 eV Total energy + Delta-G solvation = -4099.615860 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.22344 -39.84412 -39.23283 -36.26673 -35.67980 -33.90233 -32.13122 -31.78519 -31.53790 -30.52939 -29.81415 -26.46384 -25.92037 -25.55431 -24.31774 -23.65570 -22.48285 -22.41574 -20.87306 -20.40597 -19.06645 -17.78698 -17.00952 -16.65641 -16.58863 -16.25971 -15.90026 -15.53368 -15.27662 -14.92851 -14.72965 -14.63141 -14.16221 -14.10608 -13.64703 -13.50492 -13.17297 -12.96796 -12.62169 -12.37832 -12.25639 -12.20693 -12.12385 -11.98251 -11.89915 -11.81161 -11.61948 -11.41880 -11.01498 -10.82230 -10.71223 -10.66759 -10.35998 -10.27696 -10.13185 -9.96508 -9.64935 -9.59521 -9.13243 -8.81918 -8.11730 -6.83437 -5.68356 -2.96874 1.22131 1.93091 1.95282 3.32292 3.36843 3.46842 3.51971 3.54410 3.69438 3.83782 4.08142 4.29211 4.31893 4.40586 4.61868 4.63485 4.68979 4.78228 4.92392 5.01206 5.09217 5.16760 5.17679 5.29948 5.31464 5.41998 5.53201 5.54921 5.61722 5.65972 5.67462 5.76469 5.82681 6.02472 6.09967 6.19597 6.27287 6.37399 6.44792 6.56575 6.60492 6.65921 6.81928 7.10762 7.75728 7.79661 8.06364 8.49268 8.57790 9.60910 10.20387 10.55706 11.54084 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010366 B = 0.003453 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2700.490196 B = 8106.993443 C = 9943.544991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.126 3.874 3 H 0.101 0.899 4 C 0.143 3.857 5 N -0.728 5.728 6 C -0.236 4.236 7 H 0.070 0.930 8 C -0.014 4.014 9 N -0.930 5.930 10 Si 0.905 3.095 11 H -0.280 1.280 12 H -0.292 1.292 13 H -0.293 1.293 14 N -0.580 5.580 15 C 0.080 3.920 16 C 0.605 3.395 17 O -0.543 6.543 18 C -0.083 4.083 19 C 0.095 3.905 20 N -0.358 5.358 21 C 0.154 3.846 22 C -0.172 4.172 23 C 0.068 3.932 24 O -0.378 6.378 25 C 0.067 3.933 26 C -0.171 4.171 27 N -0.076 5.076 28 N -0.198 5.198 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.022 0.978 33 H 0.029 0.971 34 H 0.386 0.614 35 H 0.252 0.748 36 H 0.048 0.952 37 H 0.070 0.930 38 H 0.094 0.906 39 H 0.200 0.800 40 H 0.113 0.887 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.057 0.943 44 H 0.106 0.894 45 H 0.057 0.943 46 H 0.106 0.894 47 H 0.090 0.910 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.408 0.979 20.628 21.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.023 3.977 3 H 0.119 0.881 4 C 0.014 3.986 5 N -0.372 5.372 6 C -0.368 4.368 7 H 0.088 0.912 8 C -0.210 4.210 9 N -0.579 5.579 10 Si 0.736 3.264 11 H -0.206 1.206 12 H -0.219 1.219 13 H -0.220 1.220 14 N -0.310 5.310 15 C -0.063 4.063 16 C 0.391 3.609 17 O -0.420 6.420 18 C -0.222 4.222 19 C -0.061 4.061 20 N -0.143 5.143 21 C 0.052 3.948 22 C -0.211 4.211 23 C -0.010 4.010 24 O -0.296 6.296 25 C -0.010 4.010 26 C -0.210 4.210 27 N -0.055 5.055 28 N -0.071 5.071 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.040 0.960 33 H 0.047 0.953 34 H 0.220 0.780 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.089 0.911 38 H 0.112 0.888 39 H 0.217 0.783 40 H 0.131 0.869 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.075 0.925 44 H 0.124 0.876 45 H 0.076 0.924 46 H 0.124 0.876 47 H 0.108 0.892 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.485 0.180 20.733 21.213 hybrid contribution 0.894 0.248 -0.826 1.242 sum -3.591 0.428 19.906 20.232 Atomic orbital electron populations 1.22048 0.95028 1.02178 1.01977 1.21442 0.93420 0.98452 0.84416 0.88114 1.21025 0.87090 0.96877 0.93570 1.42301 0.99718 1.70103 1.25075 1.19261 0.89422 1.29089 0.98979 0.91212 1.24728 0.96442 1.01797 0.98016 1.69703 1.06910 1.51055 1.30210 0.86146 0.79967 0.78730 0.81540 1.20577 1.21934 1.22035 1.47444 1.49169 1.12759 1.21669 1.22034 1.01660 0.81175 1.01449 1.16731 0.78004 0.85508 0.80686 1.90777 1.60456 1.14960 1.75822 1.21437 1.06173 0.92682 1.01931 1.23211 0.97119 0.96478 0.89339 1.50540 1.32136 1.10830 1.20833 1.21570 0.88589 0.99584 0.85095 1.22721 1.02176 0.95286 1.00885 1.22547 0.82176 1.02240 0.94005 1.88009 1.29614 1.30708 1.81300 1.22594 1.00505 0.83974 0.93964 1.22729 0.92856 1.04785 1.00651 1.81942 1.06542 1.06777 1.10190 1.74743 1.15886 1.11618 1.04884 0.91405 0.92306 0.92641 0.96027 0.95286 0.78026 0.93781 0.93383 0.91112 0.88808 0.78315 0.86933 0.89235 0.89257 0.92469 0.87631 0.92437 0.87621 0.89161 0.89417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.19 37.16 0.34 -1.77 16 2 C 0.13 2.28 2.79 -67.93 -0.19 2.09 16 3 H 0.10 2.02 6.90 -51.93 -0.36 1.66 16 4 C 0.14 3.00 5.52 -4.04 -0.02 2.98 16 5 N -0.73 -19.42 5.43 -59.91 -0.33 -19.74 16 6 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 7 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 8 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 9 N -0.93 -29.23 13.06 55.49 0.72 -28.50 16 10 Si 0.90 23.08 29.55 -169.99 -5.02 18.05 16 11 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 13 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 14 N -0.58 -10.73 2.24 -175.16 -0.39 -11.12 16 15 C 0.08 1.33 8.61 59.84 0.52 1.85 16 16 C 0.60 11.92 7.37 -12.48 -0.09 11.83 16 17 O -0.54 -11.83 16.20 5.28 0.09 -11.75 16 18 C -0.08 -1.45 6.69 -83.55 -0.56 -2.01 16 19 C 0.09 1.35 10.40 -16.84 -0.18 1.18 16 20 N -0.36 -4.50 3.55 -54.38 -0.19 -4.69 16 21 C 0.15 1.30 3.32 -67.75 -0.22 1.08 16 22 C -0.17 -1.13 5.15 -26.59 -0.14 -1.27 16 23 C 0.07 0.38 6.84 37.21 0.25 0.64 16 24 O -0.38 -3.10 10.77 -35.23 -0.38 -3.48 16 25 C 0.07 0.45 6.84 37.21 0.25 0.71 16 26 C -0.17 -1.47 5.75 -26.59 -0.15 -1.62 16 27 N -0.08 -1.17 13.78 60.35 0.83 -0.33 16 28 N -0.20 -3.37 8.81 32.85 0.29 -3.08 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.06 0.75 7.67 -51.93 -0.40 0.35 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.02 0.45 6.87 -51.93 -0.36 0.09 16 33 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.39 11.16 7.06 -40.82 -0.29 10.87 16 35 H 0.25 7.65 8.31 -40.82 -0.34 7.31 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.07 1.16 6.54 -51.93 -0.34 0.82 16 38 H 0.09 1.71 5.31 -51.93 -0.28 1.44 16 39 H 0.20 2.39 7.27 -52.48 -0.38 2.00 16 40 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.09 0.65 7.08 -51.93 -0.37 0.28 16 42 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 44 H 0.11 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 46 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 48 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 387.23 15.07 5.84 5.84 Total: -1.00 -36.14 387.23 -6.37 -42.50 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -7.38 Total: 8.14 kcal Atomic # 6 Polarization: 8.59 SS G_CDS: -0.43 Total: 8.16 kcal Atomic # 7 Polarization: -68.40 SS G_CDS: 0.93 Total: -67.47 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: -0.29 Total: -15.23 kcal Atomic # 14 Polarization: 23.08 SS G_CDS: -5.02 Total: 18.05 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -36.14 -6.37 -42.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319560163.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.318 kcal (2) G-P(sol) polarization free energy of solvation -36.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds