Wall clock time and date at job start Tue Mar 31 2020 20:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.47233 * 2 1 4 4 C 1.53001 * 109.47394 * 240.00248 * 2 1 3 5 5 N 1.46498 * 109.47346 * 184.99956 * 4 2 1 6 6 C 1.36937 * 119.99925 * 180.02562 * 5 4 2 7 7 H 1.07996 * 119.99958 * 359.97438 * 6 5 4 8 8 C 1.38809 * 119.99737 * 180.02562 * 6 5 4 9 9 N 1.31621 * 120.00381 * 359.97438 * 8 6 5 10 10 Si 1.86807 * 119.99884 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47167 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47133 * 119.99701 * 10 8 6 13 13 H 1.48501 * 109.46923 * 239.99649 * 10 8 6 14 14 N 1.46500 * 109.46962 * 120.00173 * 2 1 3 15 15 C 1.46496 * 120.00022 * 60.00342 * 14 2 1 16 16 C 1.34774 * 120.00142 * 239.99584 * 14 2 1 17 17 O 1.21601 * 119.99696 * 3.34707 * 16 14 2 18 18 C 1.47524 * 120.00265 * 183.33606 * 16 14 2 19 19 C 1.36594 * 125.76944 * 173.47632 * 18 16 14 20 20 N 1.34813 * 106.83736 * 179.97438 * 19 18 16 21 21 C 1.46500 * 126.59344 * 179.97438 * 20 19 18 22 22 C 1.53175 * 109.54576 * 34.84337 * 21 20 19 23 23 C 1.53106 * 109.16136 * 183.23933 * 22 21 20 24 24 O 1.42904 * 109.48567 * 57.47331 * 23 22 21 25 25 C 1.42908 * 114.09988 * 298.89220 * 24 23 22 26 26 C 1.53099 * 109.41541 * 61.15524 * 25 24 23 27 27 N 1.40208 * 106.81046 * 0.02562 * 20 19 18 28 28 N 1.28754 * 108.37159 * 359.97438 * 27 20 19 29 29 H 1.09003 * 109.46783 * 59.99739 * 1 2 3 30 30 H 1.09004 * 109.46868 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47140 * 299.99563 * 1 2 3 32 32 H 1.09001 * 109.47006 * 305.00429 * 4 2 1 33 33 H 1.08999 * 109.46977 * 64.99696 * 4 2 1 34 34 H 0.96998 * 119.99582 * 0.02562 * 5 4 2 35 35 H 0.97002 * 120.00561 * 179.97438 * 9 8 6 36 36 H 1.08999 * 109.46885 * 264.10178 * 15 14 2 37 37 H 1.09004 * 109.47047 * 24.10398 * 15 14 2 38 38 H 1.09003 * 109.47289 * 144.10235 * 15 14 2 39 39 H 1.08004 * 126.58158 * 359.93891 * 19 18 16 40 40 H 1.08999 * 109.54068 * 155.02277 * 21 20 19 41 41 H 1.09003 * 109.51882 * 303.05972 * 22 21 20 42 42 H 1.09000 * 109.51970 * 63.24252 * 22 21 20 43 43 H 1.08997 * 109.40688 * 297.49643 * 23 22 21 44 44 H 1.08993 * 109.48589 * 177.49911 * 23 22 21 45 45 H 1.09001 * 109.47952 * 301.17799 * 25 24 23 46 46 H 1.09000 * 109.48037 * 181.13797 * 25 24 23 47 47 H 1.08995 * 109.52384 * 182.48585 * 26 25 24 48 48 H 1.09003 * 109.57077 * 62.32954 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 7 3.5001 -0.8263 -1.1906 6 6 4.1839 -1.4378 -2.2073 7 1 3.6469 -1.8429 -3.0521 8 6 5.5673 -1.5378 -2.1514 9 7 6.2218 -1.0445 -1.1215 10 14 6.5003 -2.3714 -3.5386 11 1 5.5400 -2.8369 -4.5713 12 1 7.4512 -1.4059 -4.1458 13 1 7.2512 -3.5344 -3.0013 14 7 2.0183 -0.6907 1.1962 15 6 1.6644 -2.0932 1.4279 16 6 2.7932 -0.0358 2.0833 17 8 3.0369 1.1447 1.9226 18 6 3.3455 -0.7509 3.2495 19 6 4.2397 -0.2421 4.1480 20 7 4.4818 -1.2136 5.0508 21 6 5.3795 -1.1289 6.2054 22 6 5.3445 0.2911 6.7787 23 6 6.3452 0.3918 7.9331 24 8 7.6497 0.0436 7.4649 25 6 7.7526 -1.2902 6.9622 26 6 6.8101 -1.4578 5.7674 27 7 3.7100 -2.3210 4.6716 28 7 3.0538 -2.0131 3.6075 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.6054 -1.7197 -1.2953 33 1 1.7517 -0.1582 -2.1369 34 1 3.9824 -0.4627 -0.4316 35 1 7.1885 -1.1148 -1.0822 36 1 0.7974 -2.1451 2.0864 37 1 1.4275 -2.5701 0.4768 38 1 2.5052 -2.6080 1.8930 39 1 4.6706 0.7482 4.1370 40 1 5.0598 -1.8383 6.9687 41 1 5.6150 1.0048 6.0004 42 1 4.3416 0.5118 7.1439 43 1 6.0502 -0.2921 8.7288 44 1 6.3569 1.4121 8.3161 45 1 7.4758 -1.9961 7.7452 46 1 8.7780 -1.4813 6.6459 47 1 6.8542 -2.4866 5.4101 48 1 7.1107 -0.7812 4.9674 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319560163.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:36 Heat of formation + Delta-G solvation = 16.851613 kcal Electronic energy + Delta-G solvation = -30223.324154 eV Core-core repulsion = 26122.582433 eV Total energy + Delta-G solvation = -4100.741721 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.38480 -40.87854 -40.28853 -37.86193 -36.54864 -35.80514 -33.69007 -32.68492 -32.29308 -32.12406 -31.25438 -27.84154 -27.39955 -26.71929 -25.22744 -24.68880 -24.29709 -23.42180 -22.18487 -21.21421 -20.47394 -19.13314 -18.89469 -17.78785 -17.43679 -17.31322 -16.94958 -16.77468 -16.46657 -16.17905 -15.91796 -15.69396 -15.40714 -15.22075 -15.08722 -14.88042 -14.80903 -14.05986 -13.85038 -13.67415 -13.59859 -13.50757 -13.27919 -13.26226 -13.00990 -12.82612 -12.76770 -12.56146 -12.50484 -12.27157 -12.10913 -12.03951 -11.78844 -11.71154 -11.49210 -11.24032 -11.10214 -10.95599 -10.74780 -10.37587 -9.56473 -8.99750 -7.94108 -5.23555 0.07050 0.61610 0.95149 1.44211 1.45722 1.55785 1.93714 2.27733 2.54708 2.87182 3.06352 3.16032 3.39195 3.42086 3.52791 3.73576 3.78285 3.83198 3.90543 4.08037 4.09987 4.13148 4.20186 4.31391 4.35817 4.42530 4.47867 4.49490 4.55963 4.63228 4.75464 4.77622 4.85249 4.87939 4.90514 4.94240 4.96835 5.03266 5.12030 5.22052 5.32936 5.39226 5.47904 5.67054 6.16888 6.25775 6.35086 6.81786 7.12023 7.32234 8.08647 8.32056 9.29474 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010366 B = 0.003453 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2700.490196 B = 8106.993443 C = 9943.544991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.129 3.871 3 H 0.076 0.924 4 C 0.140 3.860 5 N -0.742 5.742 6 C -0.240 4.240 7 H 0.079 0.921 8 C -0.078 4.078 9 N -0.970 5.970 10 Si 0.974 3.026 11 H -0.263 1.263 12 H -0.294 1.294 13 H -0.295 1.295 14 N -0.582 5.582 15 C 0.085 3.915 16 C 0.595 3.405 17 O -0.577 6.577 18 C -0.114 4.114 19 C 0.103 3.897 20 N -0.341 5.341 21 C 0.145 3.855 22 C -0.167 4.167 23 C 0.067 3.933 24 O -0.399 6.399 25 C 0.071 3.929 26 C -0.169 4.169 27 N -0.086 5.086 28 N -0.210 5.210 29 H 0.085 0.915 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.035 0.965 33 H 0.037 0.963 34 H 0.370 0.630 35 H 0.248 0.752 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.218 0.782 40 H 0.135 0.865 41 H 0.079 0.921 42 H 0.102 0.898 43 H 0.079 0.921 44 H 0.120 0.880 45 H 0.081 0.919 46 H 0.109 0.891 47 H 0.082 0.918 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.271 0.283 21.538 22.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.026 3.974 3 H 0.094 0.906 4 C 0.013 3.987 5 N -0.385 5.385 6 C -0.372 4.372 7 H 0.097 0.903 8 C -0.270 4.270 9 N -0.621 5.621 10 Si 0.803 3.197 11 H -0.187 1.187 12 H -0.222 1.222 13 H -0.223 1.223 14 N -0.312 5.312 15 C -0.058 4.058 16 C 0.383 3.617 17 O -0.457 6.457 18 C -0.253 4.253 19 C -0.054 4.054 20 N -0.126 5.126 21 C 0.045 3.955 22 C -0.205 4.205 23 C -0.010 4.010 24 O -0.318 6.318 25 C -0.006 4.006 26 C -0.208 4.208 27 N -0.065 5.065 28 N -0.084 5.084 29 H 0.104 0.896 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.202 0.798 35 H 0.057 0.943 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.095 0.905 39 H 0.234 0.766 40 H 0.152 0.848 41 H 0.098 0.902 42 H 0.120 0.880 43 H 0.097 0.903 44 H 0.138 0.862 45 H 0.099 0.901 46 H 0.127 0.873 47 H 0.100 0.900 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.404 -0.552 21.640 22.312 hybrid contribution 1.158 0.473 -1.051 1.633 sum -4.246 -0.080 20.589 21.023 Atomic orbital electron populations 1.21967 0.91095 1.03583 1.03316 1.21402 0.96281 0.96554 0.83167 0.90566 1.21241 0.84112 0.97913 0.95396 1.42524 1.02016 1.69847 1.24080 1.19699 0.89951 1.28122 0.99428 0.90277 1.25592 0.97536 1.03225 1.00619 1.69884 1.06740 1.53044 1.32453 0.85055 0.78512 0.77254 0.78839 1.18677 1.22171 1.22251 1.47584 1.48808 1.13400 1.21377 1.22050 1.01920 0.79952 1.01832 1.17102 0.77810 0.85404 0.81432 1.90736 1.61728 1.16308 1.76881 1.21372 1.08049 0.93386 1.02484 1.23458 0.95972 0.97273 0.88719 1.50828 1.31331 1.09439 1.20997 1.22057 0.87667 1.01694 0.84091 1.22737 1.03363 0.93427 1.01007 1.22731 0.80768 1.03716 0.93783 1.87988 1.31044 1.31321 1.81411 1.22639 1.00193 0.84142 0.93630 1.22705 0.93396 1.03625 1.01039 1.81831 1.06985 1.07778 1.09907 1.74710 1.16717 1.11462 1.05482 0.89572 0.90804 0.91829 0.94720 0.94474 0.79811 0.94344 0.90815 0.90961 0.90498 0.76588 0.84753 0.90226 0.87958 0.90315 0.86246 0.90097 0.87260 0.89955 0.91705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.58 9.19 71.98 0.66 -2.92 16 2 C 0.13 4.65 2.79 44.99 0.13 4.77 16 3 H 0.08 3.13 6.90 -2.38 -0.02 3.11 16 4 C 0.14 5.82 5.52 86.38 0.48 6.30 16 5 N -0.74 -40.14 5.43 -343.46 -1.87 -42.01 16 6 C -0.24 -13.94 9.99 84.03 0.84 -13.10 16 7 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 8 C -0.08 -4.66 5.50 84.86 0.47 -4.19 16 9 N -0.97 -62.50 13.06 21.65 0.28 -62.22 16 10 Si 0.97 47.82 29.55 68.60 2.03 49.85 16 11 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 12 H -0.29 -14.45 7.11 99.48 0.71 -13.74 16 13 H -0.30 -14.47 7.11 99.48 0.71 -13.77 16 14 N -0.58 -21.71 2.24 -826.35 -1.85 -23.56 16 15 C 0.09 2.79 8.61 127.77 1.10 3.89 16 16 C 0.60 24.21 7.37 86.69 0.64 24.85 16 17 O -0.58 -26.19 16.20 -4.03 -0.07 -26.25 16 18 C -0.11 -4.07 6.69 40.82 0.27 -3.80 16 19 C 0.10 2.99 10.40 83.85 0.87 3.86 16 20 N -0.34 -8.43 3.55 -325.97 -1.16 -9.58 16 21 C 0.14 2.27 3.32 45.11 0.15 2.42 16 22 C -0.17 -1.92 5.15 30.69 0.16 -1.76 16 23 C 0.07 0.60 6.84 72.02 0.49 1.09 16 24 O -0.40 -5.88 10.77 -148.98 -1.60 -7.48 16 25 C 0.07 0.86 6.84 72.02 0.49 1.35 16 26 C -0.17 -2.81 5.75 30.69 0.18 -2.63 16 27 N -0.09 -2.63 13.78 37.02 0.51 -2.12 16 28 N -0.21 -7.25 8.81 -49.99 -0.44 -7.69 16 29 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.07 1.66 7.67 -2.38 -0.02 1.65 16 31 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.03 1.37 6.87 -2.39 -0.02 1.36 16 33 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.37 22.13 7.06 -92.71 -0.65 21.48 16 35 H 0.25 15.44 8.31 -92.71 -0.77 14.66 16 36 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.07 2.30 6.54 -2.39 -0.02 2.29 16 38 H 0.08 2.85 5.31 -2.39 -0.01 2.83 16 39 H 0.22 5.30 7.27 -2.91 -0.02 5.28 16 40 H 0.13 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.08 1.10 7.08 -2.39 -0.02 1.08 16 42 H 0.10 0.94 8.14 -2.39 -0.02 0.93 16 43 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 44 H 0.12 0.75 8.14 -2.39 -0.02 0.74 16 45 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 46 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 47 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 48 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -79.66 387.23 3.08 -76.59 By element: Atomic # 1 Polarization: 34.04 SS G_CDS: 0.32 Total: 34.36 kcal Atomic # 6 Polarization: 13.21 SS G_CDS: 6.92 Total: 20.13 kcal Atomic # 7 Polarization: -142.67 SS G_CDS: -4.53 Total: -147.19 kcal Atomic # 8 Polarization: -32.07 SS G_CDS: -1.67 Total: -33.74 kcal Atomic # 14 Polarization: 47.82 SS G_CDS: 2.03 Total: 49.85 kcal Total: -79.66 3.08 -76.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319560163.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.437 kcal (2) G-P(sol) polarization free energy of solvation -79.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds