Wall clock time and date at job start Tue Mar 31 2020 20:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47001 * 2 1 4 4 C 1.34954 * 126.03713 * 124.99785 * 3 2 1 5 5 C 1.35315 * 107.74451 * 180.02562 * 4 3 2 6 6 C 1.50696 * 126.03620 * 180.02562 * 5 4 3 7 7 C 1.50695 * 109.47254 * 90.00452 * 6 5 4 8 8 O 1.21279 * 119.99986 * 359.97438 * 7 6 5 9 9 N 1.34775 * 120.00355 * 180.02562 * 7 6 5 10 10 C 1.46498 * 120.00447 * 179.97438 * 9 7 6 11 11 H 1.09000 * 109.47081 * 34.99508 * 10 9 7 12 12 C 1.52996 * 109.46928 * 274.99717 * 10 9 7 13 13 C 1.53005 * 109.47476 * 154.99786 * 10 9 7 14 14 N 1.46898 * 109.46739 * 304.99835 * 13 10 9 15 15 C 1.46901 * 111.00024 * 179.97438 * 14 13 10 16 16 C 1.50703 * 109.47502 * 180.02562 * 15 14 13 17 17 O 1.21295 * 119.99466 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99950 * 180.02562 * 16 15 14 19 19 C 1.37097 * 119.99846 * 180.02562 * 18 16 15 20 20 H 1.08000 * 119.99679 * 0.02562 * 19 18 16 21 21 C 1.38946 * 120.00115 * 180.02562 * 19 18 16 22 22 N 1.31409 * 119.99950 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00061 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47464 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47259 * 119.99610 * 23 21 19 26 26 H 1.48501 * 109.47000 * 239.99862 * 23 21 19 27 27 C 1.39867 * 107.92134 * 0.02562 * 5 4 3 28 28 N 1.30834 * 108.20347 * 359.97438 * 27 5 4 29 29 H 1.08998 * 109.47034 * 60.00149 * 1 2 3 30 30 H 1.09001 * 109.47204 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47440 * 300.00340 * 1 2 3 32 32 H 1.08993 * 109.47166 * 239.99637 * 2 1 3 33 33 H 1.08999 * 109.46588 * 119.99558 * 2 1 3 34 34 H 1.08001 * 126.12517 * 359.75938 * 4 3 2 35 35 H 1.09006 * 109.46835 * 209.99807 * 6 5 4 36 36 H 1.09003 * 109.47438 * 329.99807 * 6 5 4 37 37 H 0.97001 * 119.99975 * 359.97438 * 9 7 6 38 38 H 1.08995 * 109.47370 * 299.99467 * 12 10 9 39 39 H 1.08999 * 109.47401 * 60.00230 * 12 10 9 40 40 H 1.09008 * 109.47441 * 179.97438 * 12 10 9 41 41 H 1.08999 * 109.47072 * 64.99634 * 13 10 9 42 42 H 1.08997 * 109.46940 * 185.00260 * 13 10 9 43 43 H 1.00901 * 111.00413 * 303.95195 * 14 13 10 44 44 H 1.08996 * 109.47297 * 300.00565 * 15 14 13 45 45 H 1.09009 * 109.46721 * 60.00086 * 15 14 13 46 46 H 0.96996 * 120.00005 * 0.02562 * 18 16 15 47 47 H 0.96998 * 120.00561 * 180.02562 * 22 21 19 48 48 H 1.08000 * 125.89932 * 180.02562 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8731 1.9211 0.8940 5 6 3.0712 3.2138 0.5464 6 6 3.9547 4.1999 1.2660 7 6 5.3460 4.1413 0.6902 8 8 5.5958 3.3739 -0.2151 9 7 6.3132 4.9409 1.1819 10 6 7.6659 4.8835 0.6225 11 1 7.6083 4.6892 -0.4485 12 6 8.4519 3.7609 1.3028 13 6 8.3737 6.2188 0.8613 14 7 7.5585 7.3102 0.3117 15 6 8.2080 8.6107 0.5237 16 6 7.3440 9.7034 -0.0513 17 8 6.2906 9.4261 -0.5848 18 7 7.7420 10.9887 0.0272 19 6 6.9558 11.9828 -0.4954 20 1 6.0174 11.7360 -0.9697 21 6 7.3662 13.3078 -0.4150 22 7 8.5077 13.6082 0.1626 23 14 6.2946 14.6624 -1.1264 24 1 5.0697 14.0659 -1.7171 25 1 5.9139 15.6101 -0.0484 26 1 7.0487 15.3881 -2.1800 27 6 2.3111 3.4729 -0.5988 28 7 1.6797 2.3751 -0.9273 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8900 34 1 3.3159 1.4137 1.7382 35 1 3.5525 5.2055 1.1426 36 1 3.9895 3.9502 2.3265 37 1 6.1136 5.5544 1.9063 38 1 8.5096 3.9551 2.3737 39 1 7.9477 2.8096 1.1326 40 1 9.4583 3.7178 0.8863 41 1 8.5106 6.3711 1.9319 42 1 9.3459 6.2078 0.3685 43 1 7.3631 7.1584 -0.6665 44 1 8.3434 8.7793 1.5919 45 1 9.1793 8.6166 0.0289 46 1 8.5846 11.2103 0.4535 47 1 8.7942 14.5331 0.2191 48 1 2.2557 4.4160 -1.1221 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321703010.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:11 Heat of formation + Delta-G solvation = -1.085676 kcal Electronic energy + Delta-G solvation = -28109.260554 eV Core-core repulsion = 24007.741014 eV Total energy + Delta-G solvation = -4101.519540 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.34072 -39.56945 -38.28618 -36.60957 -34.82048 -34.22742 -33.61008 -32.26319 -31.22714 -30.73387 -30.25401 -27.58162 -26.94147 -25.00687 -24.00970 -23.25172 -21.77654 -20.85727 -20.57592 -19.88369 -19.22593 -17.89765 -17.26227 -16.96539 -16.54900 -15.80689 -15.57779 -15.18561 -15.06291 -14.62035 -14.51701 -14.44085 -14.18125 -13.92021 -13.81654 -13.53642 -13.23948 -13.11653 -13.04745 -12.59370 -12.56772 -12.49576 -12.40631 -11.98479 -11.83726 -11.71313 -11.67995 -11.52549 -11.46798 -11.05772 -10.89890 -10.60350 -10.34216 -10.22581 -9.73247 -9.52102 -9.47784 -8.92606 -8.48728 -8.43404 -8.09280 -7.96240 -6.42106 -3.82813 1.81283 2.36876 2.68309 2.84090 3.16419 3.27165 3.34549 3.44907 3.90608 4.07271 4.20388 4.30538 4.57948 4.65290 4.79661 4.81167 4.86777 5.00407 5.04672 5.10963 5.16148 5.20613 5.24572 5.32121 5.34014 5.36577 5.47391 5.58874 5.60567 5.64527 5.67248 5.78325 5.79307 5.94327 5.96762 6.02602 6.08521 6.25542 6.58986 6.62327 6.90763 7.16106 7.55324 7.60702 7.63659 7.70810 8.06391 8.43299 8.60957 9.17932 9.54152 10.05521 10.75687 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013880 B = 0.001963 C = 0.001749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.860701 B =14261.906043 C =16008.955018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.132 3.868 3 N -0.375 5.375 4 C 0.064 3.936 5 C -0.215 4.215 6 C -0.062 4.062 7 C 0.515 3.485 8 O -0.543 6.543 9 N -0.711 5.711 10 C 0.146 3.854 11 H 0.084 0.916 12 C -0.160 4.160 13 C 0.048 3.952 14 N -0.666 5.666 15 C 0.050 3.950 16 C 0.440 3.560 17 O -0.582 6.582 18 N -0.564 5.564 19 C -0.298 4.298 20 H 0.104 0.896 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.281 1.281 26 H -0.282 1.282 27 C 0.065 3.935 28 N -0.297 5.297 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.060 0.940 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.168 0.832 35 H 0.105 0.895 36 H 0.094 0.906 37 H 0.405 0.595 38 H 0.057 0.943 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.076 0.924 42 H 0.041 0.959 43 H 0.351 0.649 44 H 0.086 0.914 45 H 0.043 0.957 46 H 0.392 0.608 47 H 0.271 0.729 48 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.395 -24.971 7.414 26.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.011 3.989 3 N -0.158 5.158 4 C -0.082 4.082 5 C -0.227 4.227 6 C -0.103 4.103 7 C 0.301 3.699 8 O -0.420 6.420 9 N -0.362 5.362 10 C 0.040 3.960 11 H 0.102 0.898 12 C -0.219 4.219 13 C -0.082 4.082 14 N -0.298 5.298 15 C -0.082 4.082 16 C 0.226 3.774 17 O -0.466 6.466 18 N -0.201 5.201 19 C -0.428 4.428 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.543 5.543 23 Si 0.756 3.244 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.208 1.208 27 C -0.122 4.122 28 N -0.118 5.118 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.101 0.899 33 H 0.111 0.889 34 H 0.185 0.815 35 H 0.123 0.877 36 H 0.113 0.887 37 H 0.240 0.760 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.095 0.905 42 H 0.059 0.941 43 H 0.170 0.830 44 H 0.104 0.896 45 H 0.061 0.939 46 H 0.225 0.775 47 H 0.081 0.919 48 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -7.101 -26.182 6.145 27.816 hybrid contribution 1.479 1.616 0.275 2.208 sum -5.623 -24.566 6.420 26.006 Atomic orbital electron populations 1.22054 0.93872 1.02695 1.03637 1.21630 0.95957 0.77749 1.03591 1.48566 1.35875 1.10032 1.21321 1.22189 0.95337 0.94312 0.96367 1.19420 1.07037 0.94771 1.01454 1.19898 0.90768 1.00033 0.99575 1.20676 0.86552 0.79930 0.82731 1.90681 1.82714 1.39003 1.29602 1.45853 1.09488 1.41609 1.39279 1.20883 0.81965 0.93920 0.99201 0.89785 1.22128 1.00085 0.98915 1.00747 1.22310 0.94615 0.90267 1.01007 1.60056 1.45613 0.99872 1.24303 1.21680 0.95416 0.89626 1.01504 1.19810 0.88302 0.83611 0.85691 1.90534 1.24931 1.82560 1.48541 1.41870 1.21633 1.04644 1.51957 1.19756 1.03733 0.85315 1.33995 0.87860 1.25257 0.96753 0.98481 0.97481 1.69616 1.20842 1.19948 1.43939 0.85805 0.79818 0.80272 0.78487 1.19198 1.20750 1.20795 1.23785 0.95258 0.97493 0.95627 1.77297 1.24354 0.96775 1.13398 0.91038 0.90857 0.92120 0.89943 0.88880 0.81457 0.87708 0.88737 0.76044 0.92392 0.92035 0.91820 0.90517 0.94085 0.82960 0.89615 0.93907 0.77497 0.91944 0.80119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.00 10.10 37.16 0.38 -0.63 16 2 C 0.13 0.89 7.23 -4.04 -0.03 0.86 16 3 N -0.38 -4.02 3.68 -61.37 -0.23 -4.25 16 4 C 0.06 0.65 11.36 -17.22 -0.20 0.45 16 5 C -0.21 -2.46 4.59 -105.06 -0.48 -2.94 16 6 C -0.06 -0.60 6.18 -29.04 -0.18 -0.78 16 7 C 0.51 6.41 7.79 -10.99 -0.09 6.32 16 8 O -0.54 -8.90 15.70 5.56 0.09 -8.82 16 9 N -0.71 -7.76 4.80 -53.81 -0.26 -8.02 16 10 C 0.15 1.60 2.81 -67.93 -0.19 1.41 16 11 H 0.08 1.12 7.58 -51.93 -0.39 0.72 16 12 C -0.16 -1.46 9.48 37.16 0.35 -1.11 16 13 C 0.05 0.53 5.24 -3.82 -0.02 0.51 16 14 N -0.67 -9.99 5.85 -115.05 -0.67 -10.66 16 15 C 0.05 0.84 6.17 -4.97 -0.03 0.81 16 16 C 0.44 10.16 7.82 -10.98 -0.09 10.08 16 17 O -0.58 -15.55 15.78 5.54 0.09 -15.47 16 18 N -0.56 -14.10 5.29 -10.96 -0.06 -14.16 16 19 C -0.30 -8.27 9.68 -14.93 -0.14 -8.42 16 20 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 21 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 22 N -0.90 -24.37 13.05 55.50 0.72 -23.65 16 23 Si 0.93 21.00 29.55 -169.99 -5.02 15.97 16 24 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 25 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 26 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 27 C 0.06 0.83 11.96 -17.37 -0.21 0.62 16 28 N -0.30 -3.97 12.42 30.62 0.38 -3.59 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.09 0.37 8.07 -51.93 -0.42 -0.05 16 34 H 0.17 1.13 8.06 -52.49 -0.42 0.71 16 35 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.40 3.89 8.60 -40.82 -0.35 3.54 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.52 8.14 -51.92 -0.42 0.09 16 41 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.35 5.84 8.43 -39.29 -0.33 5.51 16 44 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 45 H 0.04 0.66 8.14 -51.92 -0.42 0.23 16 46 H 0.39 9.35 7.90 -40.82 -0.32 9.02 16 47 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 48 H 0.18 2.05 8.06 -52.49 -0.42 1.62 16 LS Contribution 411.36 15.07 6.20 6.20 Total: -1.00 -35.75 411.36 -7.45 -43.21 By element: Atomic # 1 Polarization: 23.22 SS G_CDS: -7.67 Total: 15.55 kcal Atomic # 6 Polarization: 8.70 SS G_CDS: -1.02 Total: 7.68 kcal Atomic # 7 Polarization: -64.22 SS G_CDS: -0.11 Total: -64.33 kcal Atomic # 8 Polarization: -24.46 SS G_CDS: 0.17 Total: -24.28 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -35.75 -7.45 -43.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321703010.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.120 kcal (2) G-P(sol) polarization free energy of solvation -35.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds