Wall clock time and date at job start Tue Mar 31 2020 20:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47001 * 2 1 4 4 C 1.34954 * 126.03713 * 124.99785 * 3 2 1 5 5 C 1.35315 * 107.74451 * 180.02562 * 4 3 2 6 6 C 1.50696 * 126.03620 * 180.02562 * 5 4 3 7 7 C 1.50695 * 109.47254 * 90.00452 * 6 5 4 8 8 O 1.21279 * 119.99986 * 359.97438 * 7 6 5 9 9 N 1.34775 * 120.00355 * 180.02562 * 7 6 5 10 10 C 1.46498 * 120.00447 * 179.97438 * 9 7 6 11 11 H 1.09000 * 109.47081 * 34.99508 * 10 9 7 12 12 C 1.52996 * 109.46928 * 274.99717 * 10 9 7 13 13 C 1.53005 * 109.47476 * 154.99786 * 10 9 7 14 14 N 1.46898 * 109.46739 * 304.99835 * 13 10 9 15 15 C 1.46901 * 111.00024 * 179.97438 * 14 13 10 16 16 C 1.50703 * 109.47502 * 180.02562 * 15 14 13 17 17 O 1.21295 * 119.99466 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99950 * 180.02562 * 16 15 14 19 19 C 1.37097 * 119.99846 * 180.02562 * 18 16 15 20 20 H 1.08000 * 119.99679 * 0.02562 * 19 18 16 21 21 C 1.38946 * 120.00115 * 180.02562 * 19 18 16 22 22 N 1.31409 * 119.99950 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00061 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47464 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47259 * 119.99610 * 23 21 19 26 26 H 1.48501 * 109.47000 * 239.99862 * 23 21 19 27 27 C 1.39867 * 107.92134 * 0.02562 * 5 4 3 28 28 N 1.30834 * 108.20347 * 359.97438 * 27 5 4 29 29 H 1.08998 * 109.47034 * 60.00149 * 1 2 3 30 30 H 1.09001 * 109.47204 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47440 * 300.00340 * 1 2 3 32 32 H 1.08993 * 109.47166 * 239.99637 * 2 1 3 33 33 H 1.08999 * 109.46588 * 119.99558 * 2 1 3 34 34 H 1.08001 * 126.12517 * 359.75938 * 4 3 2 35 35 H 1.09006 * 109.46835 * 209.99807 * 6 5 4 36 36 H 1.09003 * 109.47438 * 329.99807 * 6 5 4 37 37 H 0.97001 * 119.99975 * 359.97438 * 9 7 6 38 38 H 1.08995 * 109.47370 * 299.99467 * 12 10 9 39 39 H 1.08999 * 109.47401 * 60.00230 * 12 10 9 40 40 H 1.09008 * 109.47441 * 179.97438 * 12 10 9 41 41 H 1.08999 * 109.47072 * 64.99634 * 13 10 9 42 42 H 1.08997 * 109.46940 * 185.00260 * 13 10 9 43 43 H 1.00901 * 111.00413 * 303.95195 * 14 13 10 44 44 H 1.08996 * 109.47297 * 300.00565 * 15 14 13 45 45 H 1.09009 * 109.46721 * 60.00086 * 15 14 13 46 46 H 0.96996 * 120.00005 * 0.02562 * 18 16 15 47 47 H 0.96998 * 120.00561 * 180.02562 * 22 21 19 48 48 H 1.08000 * 125.89932 * 180.02562 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8731 1.9211 0.8940 5 6 3.0712 3.2138 0.5464 6 6 3.9547 4.1999 1.2660 7 6 5.3460 4.1413 0.6902 8 8 5.5958 3.3739 -0.2151 9 7 6.3132 4.9409 1.1819 10 6 7.6659 4.8835 0.6225 11 1 7.6083 4.6892 -0.4485 12 6 8.4519 3.7609 1.3028 13 6 8.3737 6.2188 0.8613 14 7 7.5585 7.3102 0.3117 15 6 8.2080 8.6107 0.5237 16 6 7.3440 9.7034 -0.0513 17 8 6.2906 9.4261 -0.5848 18 7 7.7420 10.9887 0.0272 19 6 6.9558 11.9828 -0.4954 20 1 6.0174 11.7360 -0.9697 21 6 7.3662 13.3078 -0.4150 22 7 8.5077 13.6082 0.1626 23 14 6.2946 14.6624 -1.1264 24 1 5.0697 14.0659 -1.7171 25 1 5.9139 15.6101 -0.0484 26 1 7.0487 15.3881 -2.1800 27 6 2.3111 3.4729 -0.5988 28 7 1.6797 2.3751 -0.9273 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8900 34 1 3.3159 1.4137 1.7382 35 1 3.5525 5.2055 1.1426 36 1 3.9895 3.9502 2.3265 37 1 6.1136 5.5544 1.9063 38 1 8.5096 3.9551 2.3737 39 1 7.9477 2.8096 1.1326 40 1 9.4583 3.7178 0.8863 41 1 8.5106 6.3711 1.9319 42 1 9.3459 6.2078 0.3685 43 1 7.3631 7.1584 -0.6665 44 1 8.3434 8.7793 1.5919 45 1 9.1793 8.6166 0.0289 46 1 8.5846 11.2103 0.4535 47 1 8.7942 14.5331 0.2191 48 1 2.2557 4.4160 -1.1221 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321703010.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:11 Heat of formation + Delta-G solvation = -29.020274 kcal Electronic energy + Delta-G solvation = -28110.471889 eV Core-core repulsion = 24007.741014 eV Total energy + Delta-G solvation = -4102.730875 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.15685 -40.55678 -40.05959 -37.71922 -36.00148 -35.47636 -34.99507 -33.25599 -33.09838 -31.64024 -30.97410 -28.92369 -27.71902 -26.65989 -24.72160 -24.52180 -22.67017 -21.62865 -21.50266 -20.99537 -20.72867 -19.88090 -18.19836 -17.84894 -17.75384 -17.22173 -16.50864 -16.32256 -16.21354 -16.15275 -15.88380 -15.36402 -15.16110 -15.11377 -14.94333 -14.73070 -14.42684 -14.03491 -13.96205 -13.80673 -13.52583 -13.32145 -13.22450 -13.05592 -12.97747 -12.94132 -12.76878 -12.64262 -12.54202 -12.38531 -12.24104 -12.11283 -11.78455 -11.49612 -11.42978 -10.75443 -10.32243 -10.31886 -9.99059 -9.85510 -9.32645 -9.24877 -8.45478 -5.93600 1.01027 1.37209 1.42727 1.56515 1.68672 1.79094 1.89949 2.08575 2.30105 2.58611 2.94836 3.22314 3.55978 3.59913 3.88064 3.99583 4.09067 4.11342 4.20523 4.21892 4.36192 4.37231 4.37703 4.47207 4.51707 4.56561 4.63477 4.69807 4.75368 4.80306 4.81180 4.84778 4.90742 4.99571 5.13314 5.22455 5.23698 5.32335 5.42877 5.71666 5.73578 5.90530 6.12324 6.22217 6.34549 6.62492 6.77691 6.82628 7.15116 7.52226 7.59339 8.15093 8.72049 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013880 B = 0.001963 C = 0.001749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.860701 B =14261.906043 C =16008.955018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.121 3.879 3 N -0.377 5.377 4 C 0.069 3.931 5 C -0.235 4.235 6 C -0.054 4.054 7 C 0.512 3.488 8 O -0.588 6.588 9 N -0.703 5.703 10 C 0.146 3.854 11 H 0.055 0.945 12 C -0.150 4.150 13 C 0.055 3.945 14 N -0.676 5.676 15 C 0.066 3.934 16 C 0.437 3.563 17 O -0.623 6.623 18 N -0.574 5.574 19 C -0.332 4.332 20 H 0.077 0.923 21 C -0.012 4.012 22 N -0.920 5.920 23 Si 0.990 3.010 24 H -0.275 1.275 25 H -0.270 1.270 26 H -0.272 1.272 27 C 0.041 3.959 28 N -0.334 5.334 29 H 0.045 0.955 30 H 0.099 0.901 31 H 0.055 0.945 32 H 0.083 0.917 33 H 0.129 0.871 34 H 0.205 0.795 35 H 0.107 0.893 36 H 0.130 0.870 37 H 0.413 0.587 38 H 0.076 0.924 39 H 0.045 0.955 40 H 0.075 0.925 41 H 0.099 0.901 42 H 0.056 0.944 43 H 0.338 0.662 44 H 0.111 0.889 45 H 0.065 0.935 46 H 0.397 0.603 47 H 0.277 0.723 48 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.370 -25.809 9.636 27.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.001 3.999 3 N -0.159 5.159 4 C -0.078 4.078 5 C -0.247 4.247 6 C -0.094 4.094 7 C 0.299 3.701 8 O -0.469 6.469 9 N -0.355 5.355 10 C 0.041 3.959 11 H 0.073 0.927 12 C -0.209 4.209 13 C -0.074 4.074 14 N -0.308 5.308 15 C -0.066 4.066 16 C 0.225 3.775 17 O -0.510 6.510 18 N -0.212 5.212 19 C -0.462 4.462 20 H 0.095 0.905 21 C -0.212 4.212 22 N -0.561 5.561 23 Si 0.814 3.186 24 H -0.200 1.200 25 H -0.195 1.195 26 H -0.197 1.197 27 C -0.145 4.145 28 N -0.156 5.156 29 H 0.065 0.935 30 H 0.118 0.882 31 H 0.074 0.926 32 H 0.101 0.899 33 H 0.147 0.853 34 H 0.222 0.778 35 H 0.125 0.875 36 H 0.147 0.853 37 H 0.250 0.750 38 H 0.095 0.905 39 H 0.064 0.936 40 H 0.094 0.906 41 H 0.117 0.883 42 H 0.074 0.926 43 H 0.156 0.844 44 H 0.129 0.871 45 H 0.082 0.918 46 H 0.231 0.769 47 H 0.087 0.913 48 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -6.047 -27.012 8.407 28.929 hybrid contribution 1.166 1.780 -0.417 2.169 sum -4.880 -25.231 7.991 26.912 Atomic orbital electron populations 1.22000 0.93508 1.03943 1.02126 1.22026 0.96349 0.76123 1.05366 1.48936 1.35588 1.10756 1.20644 1.22786 0.94306 0.93999 0.96705 1.19694 1.07542 0.95995 1.01440 1.19916 0.88559 0.99865 1.01099 1.21161 0.87607 0.79244 0.82043 1.90660 1.83545 1.41042 1.31647 1.45848 1.09393 1.41166 1.39058 1.20869 0.82355 0.94785 0.97909 0.92677 1.22030 1.00053 0.97052 1.01717 1.22376 0.94467 0.88491 1.02104 1.60068 1.46872 1.00254 1.23583 1.21545 0.94563 0.87979 1.02528 1.20965 0.88233 0.84210 0.84109 1.90508 1.27118 1.83289 1.50053 1.41932 1.21666 1.05112 1.52444 1.19679 1.03836 0.86896 1.35770 0.90490 1.25989 0.97912 0.99928 0.97375 1.69666 1.21570 1.20785 1.44044 0.84906 0.77948 0.77549 0.78151 1.19960 1.19537 1.19737 1.23979 0.96170 0.97658 0.96668 1.77207 1.25608 0.97714 1.15089 0.93540 0.88190 0.92551 0.89901 0.85335 0.77830 0.87503 0.85254 0.75042 0.90496 0.93619 0.90578 0.88260 0.92610 0.84407 0.87069 0.91751 0.76941 0.91350 0.80348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.79 10.10 71.98 0.73 -1.06 16 2 C 0.12 1.47 7.23 86.38 0.62 2.09 16 3 N -0.38 -7.89 3.68 -348.06 -1.28 -9.17 16 4 C 0.07 1.30 11.36 83.54 0.95 2.25 16 5 C -0.23 -5.34 4.59 -20.15 -0.09 -5.43 16 6 C -0.05 -0.99 6.18 29.10 0.18 -0.81 16 7 C 0.51 12.53 7.79 87.66 0.68 13.22 16 8 O -0.59 -19.68 15.70 -3.03 -0.05 -19.73 16 9 N -0.70 -14.48 4.80 -442.54 -2.12 -16.61 16 10 C 0.15 3.02 2.81 44.99 0.13 3.15 16 11 H 0.05 1.48 7.58 -2.39 -0.02 1.46 16 12 C -0.15 -2.41 9.48 71.98 0.68 -1.72 16 13 C 0.05 1.06 5.24 86.31 0.45 1.51 16 14 N -0.68 -19.30 5.85 -517.92 -3.03 -22.33 16 15 C 0.07 2.08 6.17 85.56 0.53 2.61 16 16 C 0.44 20.20 7.82 87.66 0.69 20.88 16 17 O -0.62 -34.10 15.78 -3.08 -0.05 -34.15 16 18 N -0.57 -28.89 5.29 -306.98 -1.62 -30.51 16 19 C -0.33 -18.77 9.68 84.04 0.81 -17.95 16 20 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 21 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 22 N -0.92 -49.12 13.05 21.66 0.28 -48.84 16 23 Si 0.99 42.93 29.55 68.60 2.03 44.96 16 24 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 25 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 26 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 27 C 0.04 1.10 11.96 85.24 1.02 2.12 16 28 N -0.33 -9.33 12.42 -57.03 -0.71 -10.04 16 29 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.13 0.64 8.07 -2.39 -0.02 0.62 16 34 H 0.20 2.10 8.06 -2.91 -0.02 2.08 16 35 H 0.11 1.92 8.14 -2.38 -0.02 1.90 16 36 H 0.13 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.41 7.11 8.60 -92.71 -0.80 6.31 16 38 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 41 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.34 11.22 8.43 -89.69 -0.76 10.46 16 44 H 0.11 2.99 8.14 -2.39 -0.02 2.97 16 45 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 46 H 0.40 18.84 7.90 -92.71 -0.73 18.10 16 47 H 0.28 13.83 8.31 -92.71 -0.77 13.06 16 48 H 0.18 4.51 8.06 -2.91 -0.02 4.49 16 Total: -1.00 -80.70 411.36 0.00 -80.70 By element: Atomic # 1 Polarization: 46.35 SS G_CDS: -1.29 Total: 45.06 kcal Atomic # 6 Polarization: 12.81 SS G_CDS: 7.85 Total: 20.66 kcal Atomic # 7 Polarization: -129.01 SS G_CDS: -8.48 Total: -137.50 kcal Atomic # 8 Polarization: -53.78 SS G_CDS: -0.10 Total: -53.87 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -80.70 0.00 -80.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321703010.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.679 kcal (2) G-P(sol) polarization free energy of solvation -80.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds