Wall clock time and date at job start Tue Mar 31 2020 20:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.47351 * 2 1 4 4 C 1.52998 * 109.47144 * 239.99523 * 2 1 3 5 5 N 1.46905 * 109.46866 * 185.00017 * 4 2 1 6 6 C 1.46902 * 110.99810 * 180.02562 * 5 4 2 7 7 C 1.50703 * 109.47032 * 180.02562 * 6 5 4 8 8 O 1.21287 * 119.99590 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99890 * 180.02562 * 7 6 5 10 10 C 1.37101 * 119.99851 * 179.97438 * 9 7 6 11 11 H 1.07998 * 120.00089 * 359.97438 * 10 9 7 12 12 C 1.38948 * 119.99566 * 179.97438 * 10 9 7 13 13 N 1.31406 * 120.00633 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99667 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47164 * 60.00237 * 14 12 10 16 16 H 1.48498 * 109.47332 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.47419 * 300.00331 * 14 12 10 18 18 N 1.46506 * 109.46932 * 119.99574 * 2 1 3 19 19 C 1.34773 * 120.00045 * 275.00528 * 18 2 1 20 20 O 1.21280 * 119.99971 * 359.97438 * 19 18 2 21 21 C 1.50703 * 119.99928 * 180.02562 * 19 18 2 22 22 C 1.52999 * 109.46968 * 179.97438 * 21 19 18 23 23 C 1.50703 * 109.46620 * 179.97438 * 22 21 19 24 24 C 1.34669 * 126.59045 * 84.95969 * 23 22 21 25 25 N 1.34128 * 108.01780 * 180.02562 * 24 23 22 26 26 C 1.30495 * 109.25774 * 359.72199 * 25 24 23 27 27 N 1.35045 * 108.69990 * 0.44365 * 26 25 24 28 28 C 1.46499 * 126.39849 * 179.82112 * 27 26 25 29 29 H 1.08992 * 109.47185 * 300.00332 * 1 2 3 30 30 H 1.09001 * 109.46562 * 60.00009 * 1 2 3 31 31 H 1.08999 * 109.46957 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47251 * 305.00347 * 4 2 1 33 33 H 1.09005 * 109.46955 * 65.00811 * 4 2 1 34 34 H 1.00894 * 110.99967 * 56.04791 * 5 4 2 35 35 H 1.09005 * 109.46972 * 300.00254 * 6 5 4 36 36 H 1.09001 * 109.47504 * 59.99964 * 6 5 4 37 37 H 0.97008 * 119.99872 * 359.97438 * 9 7 6 38 38 H 0.97003 * 120.00465 * 179.97438 * 13 12 10 39 39 H 0.97007 * 119.99450 * 95.00038 * 18 2 1 40 40 H 1.08996 * 109.47010 * 59.99518 * 21 19 18 41 41 H 1.09000 * 109.46804 * 299.99611 * 21 19 18 42 42 H 1.08996 * 109.47442 * 60.00036 * 22 21 19 43 43 H 1.09006 * 109.46894 * 299.99387 * 22 21 19 44 44 H 1.08000 * 125.99191 * 0.02748 * 24 23 22 45 45 H 1.07997 * 125.65170 * 180.29145 * 26 25 24 46 46 H 1.09002 * 109.47391 * 269.69091 * 28 27 26 47 47 H 1.09001 * 109.46813 * 149.69147 * 28 27 26 48 48 H 1.09004 * 109.47041 * 29.69274 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5041 -0.8267 -1.1903 6 6 4.0305 -1.5150 -2.3765 7 6 5.5318 -1.6046 -2.2804 8 8 6.1066 -1.1403 -1.3186 9 7 6.2357 -2.1997 -3.2637 10 6 7.6015 -2.2807 -3.1766 11 1 8.1134 -1.8673 -2.3202 12 6 8.3270 -2.8947 -4.1901 13 7 7.7043 -3.3972 -5.2324 14 14 10.1880 -3.0044 -4.0717 15 1 10.5625 -3.7639 -2.8518 16 1 10.7202 -3.6998 -5.2710 17 1 10.7610 -1.6363 -3.9984 18 7 2.0183 -0.6906 1.1963 19 6 2.1469 -0.0182 2.3572 20 8 1.8589 1.1587 2.4115 21 6 2.6498 -0.7284 3.5876 22 6 2.7016 0.2549 4.7586 23 6 3.2039 -0.4556 5.9891 24 6 4.4909 -0.6548 6.3320 25 7 4.5118 -1.3254 7.4933 26 6 3.2868 -1.5442 7.8861 27 7 2.4396 -1.0228 6.9729 28 6 0.9759 -1.0532 7.0278 29 1 -0.3633 0.5138 0.8899 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6054 -1.7198 -1.2950 33 1 1.7518 -0.1584 -2.1369 34 1 3.7996 -1.2883 -0.3432 35 1 3.6096 -2.5191 -2.4306 36 1 3.7560 -0.9573 -3.2719 37 1 5.7758 -2.5706 -4.0331 38 1 8.2108 -3.8256 -5.9401 39 1 2.2490 -1.6318 1.1527 40 1 3.6491 -1.1202 3.3980 41 1 1.9776 -1.5507 3.8326 42 1 1.7025 0.6470 4.9483 43 1 3.3741 1.0769 4.5133 44 1 5.3547 -0.3312 5.7703 45 1 2.9982 -2.0593 8.7904 46 1 0.6120 -1.9506 6.5275 47 1 0.5753 -0.1710 6.5284 48 1 0.6515 -1.0604 8.0684 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321724483.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:46 Heat of formation + Delta-G solvation = -18.486056 kcal Electronic energy + Delta-G solvation = -28211.657469 eV Core-core repulsion = 24109.383392 eV Total energy + Delta-G solvation = -4102.274077 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.33759 -40.01500 -38.34186 -36.85811 -34.53962 -34.28718 -33.82903 -33.65551 -31.36146 -31.15671 -28.93243 -27.63863 -27.32083 -25.19588 -24.73480 -23.27423 -21.69079 -21.39031 -20.53138 -20.01787 -19.27232 -17.93937 -17.64682 -17.03522 -16.48498 -16.10568 -15.92998 -15.80946 -15.35227 -14.82791 -14.61232 -14.46836 -14.28066 -13.95255 -13.77229 -13.63081 -13.37002 -13.26361 -13.20137 -13.11183 -12.95554 -12.61855 -12.40909 -12.31852 -11.97788 -11.76618 -11.63135 -11.49033 -11.43485 -11.08159 -10.99218 -10.44600 -10.22383 -10.15900 -9.97652 -9.83374 -9.51208 -9.22052 -8.56742 -8.49707 -8.12106 -7.97710 -6.42883 -3.83815 1.74207 2.46813 2.54417 2.92768 3.08310 3.20055 3.25816 3.30444 3.88377 4.02215 4.24468 4.29279 4.33751 4.47364 4.62379 4.66736 4.67793 4.76160 4.91103 4.95167 4.98064 5.14031 5.16750 5.18811 5.24524 5.26017 5.37910 5.43913 5.50613 5.58476 5.60646 5.73278 5.78104 5.87957 5.93486 6.02527 6.13925 6.23312 6.37988 6.53116 6.91399 7.11161 7.34498 7.54074 7.56364 7.85241 8.04619 8.11042 8.59575 9.16526 9.52417 10.03770 10.74663 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010373 B = 0.002169 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2698.569771 B =12906.557099 C =15193.106242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.143 3.857 3 H 0.098 0.902 4 C 0.050 3.950 5 N -0.667 5.667 6 C 0.050 3.950 7 C 0.439 3.561 8 O -0.582 6.582 9 N -0.563 5.563 10 C -0.300 4.300 11 H 0.103 0.897 12 C 0.022 3.978 13 N -0.902 5.902 14 Si 0.931 3.069 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.273 1.273 18 N -0.723 5.723 19 C 0.519 3.481 20 O -0.541 6.541 21 C -0.137 4.137 22 C -0.025 4.025 23 C -0.024 4.024 24 C -0.021 4.021 25 N -0.493 5.493 26 C 0.175 3.825 27 N -0.461 5.461 28 C 0.070 3.930 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.055 0.945 32 H 0.031 0.969 33 H 0.087 0.913 34 H 0.348 0.652 35 H 0.043 0.957 36 H 0.087 0.913 37 H 0.392 0.608 38 H 0.272 0.728 39 H 0.398 0.602 40 H 0.103 0.897 41 H 0.088 0.912 42 H 0.075 0.925 43 H 0.097 0.903 44 H 0.171 0.829 45 H 0.203 0.797 46 H 0.077 0.923 47 H 0.086 0.914 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.054 1.391 17.911 26.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.039 3.961 3 H 0.116 0.884 4 C -0.080 4.080 5 N -0.300 5.300 6 C -0.083 4.083 7 C 0.224 3.776 8 O -0.466 6.466 9 N -0.199 5.199 10 C -0.429 4.429 11 H 0.120 0.880 12 C -0.179 4.179 13 N -0.543 5.543 14 Si 0.758 3.242 15 H -0.199 1.199 16 H -0.210 1.210 17 H -0.198 1.198 18 N -0.375 5.375 19 C 0.306 3.694 20 O -0.418 6.418 21 C -0.177 4.177 22 C -0.064 4.064 23 C -0.138 4.138 24 C -0.169 4.169 25 N -0.210 5.210 26 C -0.107 4.107 27 N -0.144 5.144 28 C -0.073 4.073 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.050 0.950 33 H 0.105 0.895 34 H 0.167 0.833 35 H 0.061 0.939 36 H 0.105 0.895 37 H 0.225 0.775 38 H 0.082 0.918 39 H 0.232 0.768 40 H 0.121 0.879 41 H 0.106 0.894 42 H 0.094 0.906 43 H 0.115 0.885 44 H 0.188 0.812 45 H 0.220 0.780 46 H 0.095 0.905 47 H 0.105 0.895 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -19.127 2.829 18.582 26.817 hybrid contribution -0.313 -1.651 -0.847 1.882 sum -19.440 1.178 17.735 26.340 Atomic orbital electron populations 1.22141 0.95126 1.01963 1.02707 1.21040 0.93319 0.98562 0.83198 0.88385 1.22305 0.88887 0.98931 0.97859 1.60005 1.07428 1.57575 1.04977 1.21694 0.95204 0.96914 0.94439 1.19791 0.88049 0.84370 0.85363 1.90531 1.71101 1.51491 1.33508 1.41858 1.07418 1.50857 1.19807 1.19657 0.81506 1.35193 1.06591 0.87953 1.25263 1.00735 0.96735 0.95190 1.69599 1.36827 1.38567 1.09335 0.85913 0.82075 0.78657 0.77564 1.19884 1.20981 1.19842 1.46046 1.67573 1.13946 1.09917 1.20539 0.77085 0.87260 0.84532 1.90702 1.50082 1.15878 1.85158 1.21672 1.04070 0.99333 0.92651 1.19719 1.02697 0.96431 0.87558 1.21268 0.91968 1.05947 0.94663 1.22183 0.95455 1.03608 0.95619 1.70295 1.20848 1.17072 1.12799 1.24935 0.84876 1.03534 0.97309 1.45324 1.07560 1.42897 1.18662 1.22050 0.76909 1.04023 1.04300 0.91993 0.91391 0.92631 0.95050 0.89485 0.83257 0.93893 0.89464 0.77470 0.91810 0.76834 0.87851 0.89379 0.90650 0.88452 0.81152 0.78007 0.90482 0.89531 0.89398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.37 9.48 37.16 0.35 -1.01 16 2 C 0.14 1.51 2.88 -67.93 -0.20 1.32 16 3 H 0.10 1.30 7.58 -51.93 -0.39 0.91 16 4 C 0.05 0.55 5.30 -3.82 -0.02 0.53 16 5 N -0.67 -10.21 6.12 -115.05 -0.70 -10.91 16 6 C 0.05 0.85 6.17 -4.97 -0.03 0.82 16 7 C 0.44 10.23 7.82 -10.98 -0.09 10.14 16 8 O -0.58 -15.72 15.78 5.55 0.09 -15.63 16 9 N -0.56 -14.13 5.29 -10.96 -0.06 -14.19 16 10 C -0.30 -8.34 9.68 -14.93 -0.14 -8.49 16 11 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 12 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 13 N -0.90 -24.40 13.05 55.50 0.72 -23.67 16 14 Si 0.93 21.07 29.55 -169.99 -5.02 16.05 16 15 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 16 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 17 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 18 N -0.72 -7.10 4.36 -53.80 -0.23 -7.33 16 19 C 0.52 5.71 7.79 -10.99 -0.09 5.62 16 20 O -0.54 -7.83 15.64 5.56 0.09 -7.75 16 21 C -0.14 -1.14 5.68 -27.88 -0.16 -1.30 16 22 C -0.03 -0.22 4.84 -27.88 -0.13 -0.36 16 23 C -0.02 -0.23 6.21 -81.60 -0.51 -0.74 16 24 C -0.02 -0.24 11.79 -17.81 -0.21 -0.45 16 25 N -0.49 -6.07 11.25 -14.67 -0.17 -6.23 16 26 C 0.18 1.56 12.56 -90.38 -1.14 0.42 16 27 N -0.46 -3.61 3.15 -121.36 -0.38 -3.99 16 28 C 0.07 0.26 11.00 59.85 0.66 0.92 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.35 5.41 7.28 -39.30 -0.29 5.13 16 35 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 37 H 0.39 9.37 7.90 -40.82 -0.32 9.05 16 38 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 39 H 0.40 3.18 8.15 -40.82 -0.33 2.85 16 40 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.07 0.63 7.05 -51.93 -0.37 0.26 16 43 H 0.10 0.96 8.10 -51.93 -0.42 0.54 16 44 H 0.17 1.79 8.06 -52.49 -0.42 1.37 16 45 H 0.20 1.01 8.06 -52.49 -0.42 0.59 16 46 H 0.08 0.22 8.14 -51.93 -0.42 -0.21 16 47 H 0.09 0.31 7.12 -51.93 -0.37 -0.06 16 48 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 LS Contribution 406.54 15.07 6.13 6.13 Total: -1.00 -36.36 406.54 -8.83 -45.19 By element: Atomic # 1 Polarization: 21.90 SS G_CDS: -7.50 Total: 14.41 kcal Atomic # 6 Polarization: 9.73 SS G_CDS: -1.79 Total: 7.94 kcal Atomic # 7 Polarization: -65.51 SS G_CDS: -0.82 Total: -66.33 kcal Atomic # 8 Polarization: -23.55 SS G_CDS: 0.17 Total: -23.37 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -36.36 -8.83 -45.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321724483.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.702 kcal (2) G-P(sol) polarization free energy of solvation -36.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds