Wall clock time and date at job start Tue Mar 31 2020 20:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.47351 * 2 1 4 4 C 1.52998 * 109.47144 * 239.99523 * 2 1 3 5 5 N 1.46905 * 109.46866 * 185.00017 * 4 2 1 6 6 C 1.46902 * 110.99810 * 180.02562 * 5 4 2 7 7 C 1.50703 * 109.47032 * 180.02562 * 6 5 4 8 8 O 1.21287 * 119.99590 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99890 * 180.02562 * 7 6 5 10 10 C 1.37101 * 119.99851 * 179.97438 * 9 7 6 11 11 H 1.07998 * 120.00089 * 359.97438 * 10 9 7 12 12 C 1.38948 * 119.99566 * 179.97438 * 10 9 7 13 13 N 1.31406 * 120.00633 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99667 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47164 * 60.00237 * 14 12 10 16 16 H 1.48498 * 109.47332 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.47419 * 300.00331 * 14 12 10 18 18 N 1.46506 * 109.46932 * 119.99574 * 2 1 3 19 19 C 1.34773 * 120.00045 * 275.00528 * 18 2 1 20 20 O 1.21280 * 119.99971 * 359.97438 * 19 18 2 21 21 C 1.50703 * 119.99928 * 180.02562 * 19 18 2 22 22 C 1.52999 * 109.46968 * 179.97438 * 21 19 18 23 23 C 1.50703 * 109.46620 * 179.97438 * 22 21 19 24 24 C 1.34669 * 126.59045 * 84.95969 * 23 22 21 25 25 N 1.34128 * 108.01780 * 180.02562 * 24 23 22 26 26 C 1.30495 * 109.25774 * 359.72199 * 25 24 23 27 27 N 1.35045 * 108.69990 * 0.44365 * 26 25 24 28 28 C 1.46499 * 126.39849 * 179.82112 * 27 26 25 29 29 H 1.08992 * 109.47185 * 300.00332 * 1 2 3 30 30 H 1.09001 * 109.46562 * 60.00009 * 1 2 3 31 31 H 1.08999 * 109.46957 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47251 * 305.00347 * 4 2 1 33 33 H 1.09005 * 109.46955 * 65.00811 * 4 2 1 34 34 H 1.00894 * 110.99967 * 56.04791 * 5 4 2 35 35 H 1.09005 * 109.46972 * 300.00254 * 6 5 4 36 36 H 1.09001 * 109.47504 * 59.99964 * 6 5 4 37 37 H 0.97008 * 119.99872 * 359.97438 * 9 7 6 38 38 H 0.97003 * 120.00465 * 179.97438 * 13 12 10 39 39 H 0.97007 * 119.99450 * 95.00038 * 18 2 1 40 40 H 1.08996 * 109.47010 * 59.99518 * 21 19 18 41 41 H 1.09000 * 109.46804 * 299.99611 * 21 19 18 42 42 H 1.08996 * 109.47442 * 60.00036 * 22 21 19 43 43 H 1.09006 * 109.46894 * 299.99387 * 22 21 19 44 44 H 1.08000 * 125.99191 * 0.02748 * 24 23 22 45 45 H 1.07997 * 125.65170 * 180.29145 * 26 25 24 46 46 H 1.09002 * 109.47391 * 269.69091 * 28 27 26 47 47 H 1.09001 * 109.46813 * 149.69147 * 28 27 26 48 48 H 1.09004 * 109.47041 * 29.69274 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5041 -0.8267 -1.1903 6 6 4.0305 -1.5150 -2.3765 7 6 5.5318 -1.6046 -2.2804 8 8 6.1066 -1.1403 -1.3186 9 7 6.2357 -2.1997 -3.2637 10 6 7.6015 -2.2807 -3.1766 11 1 8.1134 -1.8673 -2.3202 12 6 8.3270 -2.8947 -4.1901 13 7 7.7043 -3.3972 -5.2324 14 14 10.1880 -3.0044 -4.0717 15 1 10.5625 -3.7639 -2.8518 16 1 10.7202 -3.6998 -5.2710 17 1 10.7610 -1.6363 -3.9984 18 7 2.0183 -0.6906 1.1963 19 6 2.1469 -0.0182 2.3572 20 8 1.8589 1.1587 2.4115 21 6 2.6498 -0.7284 3.5876 22 6 2.7016 0.2549 4.7586 23 6 3.2039 -0.4556 5.9891 24 6 4.4909 -0.6548 6.3320 25 7 4.5118 -1.3254 7.4933 26 6 3.2868 -1.5442 7.8861 27 7 2.4396 -1.0228 6.9729 28 6 0.9759 -1.0532 7.0278 29 1 -0.3633 0.5138 0.8899 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6054 -1.7198 -1.2950 33 1 1.7518 -0.1584 -2.1369 34 1 3.7996 -1.2883 -0.3432 35 1 3.6096 -2.5191 -2.4306 36 1 3.7560 -0.9573 -3.2719 37 1 5.7758 -2.5706 -4.0331 38 1 8.2108 -3.8256 -5.9401 39 1 2.2490 -1.6318 1.1527 40 1 3.6491 -1.1202 3.3980 41 1 1.9776 -1.5507 3.8326 42 1 1.7025 0.6470 4.9483 43 1 3.3741 1.0769 4.5133 44 1 5.3547 -0.3312 5.7703 45 1 2.9982 -2.0593 8.7904 46 1 0.6120 -1.9506 6.5275 47 1 0.5753 -0.1710 6.5284 48 1 0.6515 -1.0604 8.0684 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321724483.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:45 Heat of formation + Delta-G solvation = -45.491419 kcal Electronic energy + Delta-G solvation = -28212.828509 eV Core-core repulsion = 24109.383392 eV Total energy + Delta-G solvation = -4103.445117 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.02714 -40.91777 -40.12087 -37.93223 -36.03540 -35.22885 -35.04442 -34.50866 -33.25876 -32.14635 -29.67067 -28.96685 -27.76671 -26.71750 -25.65380 -24.57531 -22.41268 -22.21015 -21.39449 -21.06924 -20.68215 -19.91047 -18.50285 -17.93711 -17.57111 -17.21758 -16.88183 -16.64736 -16.51680 -16.32223 -16.02416 -15.52051 -15.34243 -15.20833 -15.04847 -14.51246 -14.32102 -14.10902 -14.09172 -13.84402 -13.75219 -13.53130 -13.44203 -13.20364 -13.07830 -13.02631 -12.98207 -12.79095 -12.61914 -12.43197 -12.15739 -12.12701 -11.92228 -11.50414 -10.95286 -10.85889 -10.48447 -10.36535 -10.06177 -10.01515 -9.32037 -9.31322 -8.46780 -5.95294 1.05562 1.39547 1.41792 1.52296 1.67399 1.91988 2.05705 2.15900 2.28075 2.30513 2.89942 3.20668 3.49870 3.60148 3.86624 3.90760 3.95356 3.97234 4.02822 4.20006 4.21673 4.28759 4.38926 4.43881 4.48465 4.50739 4.56490 4.60140 4.68825 4.70914 4.72296 4.76414 4.82198 4.93501 5.06786 5.11071 5.29100 5.40767 5.44101 5.56235 5.77929 5.87124 6.09056 6.32899 6.38751 6.54950 6.60348 7.12820 7.13325 7.28043 7.56620 8.12263 8.70176 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010373 B = 0.002169 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2698.569771 B =12906.557099 C =15193.106242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.145 3.855 3 H 0.065 0.935 4 C 0.056 3.944 5 N -0.688 5.688 6 C 0.066 3.934 7 C 0.435 3.565 8 O -0.625 6.625 9 N -0.572 5.572 10 C -0.334 4.334 11 H 0.077 0.923 12 C -0.012 4.012 13 N -0.919 5.919 14 Si 0.991 3.009 15 H -0.272 1.272 16 H -0.270 1.270 17 H -0.274 1.274 18 N -0.716 5.716 19 C 0.516 3.484 20 O -0.581 6.581 21 C -0.126 4.126 22 C -0.017 4.017 23 C -0.020 4.020 24 C -0.054 4.054 25 N -0.540 5.540 26 C 0.180 3.820 27 N -0.457 5.457 28 C 0.062 3.938 29 H 0.048 0.952 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.059 0.941 33 H 0.097 0.903 34 H 0.344 0.656 35 H 0.073 0.927 36 H 0.105 0.895 37 H 0.397 0.603 38 H 0.278 0.722 39 H 0.409 0.591 40 H 0.101 0.899 41 H 0.114 0.886 42 H 0.082 0.918 43 H 0.079 0.921 44 H 0.164 0.836 45 H 0.239 0.761 46 H 0.092 0.908 47 H 0.089 0.911 48 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.217 -0.020 17.902 28.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.040 3.960 3 H 0.083 0.917 4 C -0.073 4.073 5 N -0.321 5.321 6 C -0.067 4.067 7 C 0.223 3.777 8 O -0.511 6.511 9 N -0.210 5.210 10 C -0.464 4.464 11 H 0.095 0.905 12 C -0.212 4.212 13 N -0.560 5.560 14 Si 0.814 3.186 15 H -0.197 1.197 16 H -0.194 1.194 17 H -0.199 1.199 18 N -0.368 5.368 19 C 0.304 3.696 20 O -0.461 6.461 21 C -0.166 4.166 22 C -0.056 4.056 23 C -0.136 4.136 24 C -0.201 4.201 25 N -0.258 5.258 26 C -0.102 4.102 27 N -0.140 5.140 28 C -0.079 4.079 29 H 0.067 0.933 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.077 0.923 33 H 0.115 0.885 34 H 0.163 0.837 35 H 0.091 0.909 36 H 0.123 0.877 37 H 0.231 0.769 38 H 0.087 0.913 39 H 0.245 0.755 40 H 0.119 0.881 41 H 0.133 0.867 42 H 0.101 0.899 43 H 0.097 0.903 44 H 0.181 0.819 45 H 0.255 0.745 46 H 0.110 0.890 47 H 0.108 0.892 48 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -21.341 1.388 18.543 28.305 hybrid contribution 0.286 -1.189 -0.804 1.463 sum -21.055 0.199 17.739 27.532 Atomic orbital electron populations 1.22045 0.93069 1.03118 1.02681 1.20968 0.94774 0.96850 0.83368 0.91687 1.22366 0.86119 1.00552 0.98288 1.59976 1.10321 1.57637 1.04163 1.21547 0.90105 0.99160 0.95849 1.20963 0.90795 0.82168 0.83823 1.90502 1.72889 1.52740 1.34980 1.41924 1.06807 1.51645 1.20602 1.19604 0.83164 1.36920 1.06693 0.90490 1.26006 1.04785 0.95853 0.94555 1.69653 1.38295 1.38438 1.09569 0.85023 0.76983 0.78555 0.77997 1.19678 1.19407 1.19921 1.46018 1.66922 1.14433 1.09453 1.20957 0.76398 0.86832 0.85384 1.90685 1.51963 1.17616 1.85817 1.21611 1.04357 0.99508 0.91167 1.19600 1.02482 0.95983 0.87544 1.21217 0.91632 1.05670 0.95077 1.22276 0.96390 1.05127 0.96313 1.70230 1.23209 1.18752 1.13616 1.25613 0.84162 1.02466 0.97973 1.45539 1.09111 1.41730 1.17578 1.22388 0.74221 1.04906 1.06371 0.93263 0.90224 0.90782 0.92287 0.88512 0.83719 0.90933 0.87677 0.76891 0.91280 0.75539 0.88090 0.86743 0.89944 0.90291 0.81913 0.74478 0.88950 0.89238 0.86882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 9.48 71.98 0.68 -1.54 16 2 C 0.15 2.88 2.88 44.99 0.13 3.01 16 3 H 0.06 1.75 7.58 -2.39 -0.02 1.73 16 4 C 0.06 1.08 5.30 86.30 0.46 1.53 16 5 N -0.69 -20.07 6.12 -517.91 -3.17 -23.23 16 6 C 0.07 2.10 6.17 85.56 0.53 2.62 16 7 C 0.43 20.31 7.82 87.66 0.69 21.00 16 8 O -0.62 -34.50 15.78 -3.05 -0.05 -34.55 16 9 N -0.57 -28.99 5.29 -306.99 -1.62 -30.61 16 10 C -0.33 -18.96 9.68 84.04 0.81 -18.14 16 11 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 12 C -0.01 -0.64 5.50 84.93 0.47 -0.18 16 13 N -0.92 -49.18 13.05 21.66 0.28 -48.90 16 14 Si 0.99 43.04 29.55 68.60 2.03 45.07 16 15 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 16 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 17 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 18 N -0.72 -13.26 4.36 -442.52 -1.93 -15.19 16 19 C 0.52 11.20 7.79 87.66 0.68 11.89 16 20 O -0.58 -17.16 15.64 -3.03 -0.05 -17.21 16 21 C -0.13 -2.02 5.68 29.85 0.17 -1.85 16 22 C -0.02 -0.30 4.84 29.85 0.14 -0.16 16 23 C -0.02 -0.39 6.21 40.95 0.25 -0.13 16 24 C -0.05 -1.30 11.79 83.52 0.98 -0.31 16 25 N -0.54 -13.51 11.25 -200.32 -2.25 -15.76 16 26 C 0.18 2.96 12.56 180.26 2.26 5.23 16 27 N -0.46 -6.45 3.15 -537.88 -1.70 -8.14 16 28 C 0.06 0.30 11.00 127.77 1.41 1.70 16 29 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.10 1.72 8.14 -2.38 -0.02 1.70 16 34 H 0.34 10.40 7.28 -89.70 -0.65 9.74 16 35 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 36 H 0.11 3.02 8.14 -2.39 -0.02 3.01 16 37 H 0.40 18.93 7.90 -92.70 -0.73 18.20 16 38 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 39 H 0.41 5.79 8.15 -92.70 -0.76 5.03 16 40 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.08 1.33 7.05 -2.39 -0.02 1.31 16 43 H 0.08 1.68 8.10 -2.38 -0.02 1.66 16 44 H 0.16 3.85 8.06 -2.91 -0.02 3.83 16 45 H 0.24 1.77 8.06 -2.91 -0.02 1.74 16 46 H 0.09 0.21 8.14 -2.39 -0.02 0.19 16 47 H 0.09 0.42 7.12 -2.39 -0.02 0.40 16 48 H 0.11 0.00 8.14 -2.38 -0.02 -0.02 16 Total: -1.00 -81.63 406.54 0.07 -81.56 By element: Atomic # 1 Polarization: 43.44 SS G_CDS: -1.14 Total: 42.29 kcal Atomic # 6 Polarization: 15.00 SS G_CDS: 9.67 Total: 24.67 kcal Atomic # 7 Polarization: -131.45 SS G_CDS: -10.38 Total: -141.84 kcal Atomic # 8 Polarization: -51.66 SS G_CDS: -0.10 Total: -51.76 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -81.63 0.07 -81.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321724483.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.067 kcal (2) G-P(sol) polarization free energy of solvation -81.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds