Wall clock time and date at job start Tue Mar 31 2020 20:06:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99728 * 2 1 3 5 5 N 1.46895 * 109.46918 * 185.00194 * 4 2 1 6 6 C 1.46908 * 110.99864 * 180.02562 * 5 4 2 7 7 C 1.50696 * 109.46912 * 179.97438 * 6 5 4 8 8 O 1.21293 * 120.00517 * 0.02562 * 7 6 5 9 9 N 1.34785 * 119.99759 * 179.97438 * 7 6 5 10 10 C 1.37098 * 119.99820 * 180.02562 * 9 7 6 11 11 H 1.07997 * 120.00078 * 359.97438 * 10 9 7 12 12 C 1.38951 * 119.99541 * 180.02562 * 10 9 7 13 13 N 1.31405 * 120.00561 * 359.97438 * 12 10 9 14 14 Si 1.86809 * 119.99409 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47337 * 59.99682 * 14 12 10 16 16 H 1.48502 * 109.46668 * 179.97438 * 14 12 10 17 17 H 1.48494 * 109.47030 * 299.99457 * 14 12 10 18 18 N 1.46500 * 109.46998 * 119.99942 * 2 1 3 19 19 C 1.34773 * 119.99910 * 275.00232 * 18 2 1 20 20 O 1.21288 * 120.00271 * 359.97438 * 19 18 2 21 21 C 1.50699 * 119.99928 * 179.97438 * 19 18 2 22 22 H 1.08995 * 109.47183 * 60.00106 * 21 19 18 23 23 C 1.52999 * 109.47204 * 299.99575 * 21 19 18 24 24 C 1.50710 * 109.47340 * 179.97438 * 21 19 18 25 25 C 1.39863 * 126.03896 * 59.68608 * 24 21 19 26 26 N 1.30834 * 108.20007 * 179.81875 * 25 24 21 27 27 N 1.40077 * 108.20619 * 0.44537 * 26 25 24 28 28 C 1.46505 * 126.03986 * 179.73840 * 27 26 25 29 29 C 1.34943 * 107.92981 * 359.71503 * 27 26 25 30 30 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 31 31 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 33 33 H 1.08998 * 109.47192 * 305.00392 * 4 2 1 34 34 H 1.08998 * 109.46934 * 65.00238 * 4 2 1 35 35 H 1.00902 * 111.00298 * 56.04947 * 5 4 2 36 36 H 1.08999 * 109.47023 * 300.00086 * 6 5 4 37 37 H 1.08996 * 109.47022 * 59.99922 * 6 5 4 38 38 H 0.96996 * 119.99928 * 0.02562 * 9 7 6 39 39 H 0.96996 * 120.00444 * 180.02562 * 13 12 10 40 40 H 0.96995 * 120.00293 * 94.99410 * 18 2 1 41 41 H 1.08999 * 109.46749 * 60.00120 * 23 21 19 42 42 H 1.09001 * 109.47211 * 179.97438 * 23 21 19 43 43 H 1.08999 * 109.47113 * 300.00023 * 23 21 19 44 44 H 1.08001 * 125.89837 * 0.02562 * 25 24 21 45 45 H 1.09008 * 109.46952 * 269.97728 * 28 27 26 46 46 H 1.09006 * 109.46793 * 29.96794 * 28 27 26 47 47 H 1.08993 * 109.47757 * 149.97513 * 28 27 26 48 48 H 1.08001 * 126.13718 * 180.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 3.5040 -0.8267 -1.1903 6 6 4.0304 -1.5150 -2.3766 7 6 5.5318 -1.6035 -2.2811 8 8 6.1067 -1.1393 -1.3192 9 7 6.2356 -2.1993 -3.2641 10 6 7.6014 -2.2803 -3.1770 11 1 8.1134 -1.8663 -2.3209 12 6 8.3270 -2.8940 -4.1907 13 7 7.7041 -3.3973 -5.2325 14 14 10.1881 -3.0037 -4.0722 15 1 10.5626 -3.7632 -2.8524 16 1 10.7201 -3.7000 -5.2712 17 1 10.7608 -1.6357 -3.9989 18 7 2.0184 -0.6906 1.1962 19 6 2.1470 -0.0182 2.3571 20 8 1.8590 1.1587 2.4115 21 6 2.6488 -0.7288 3.5877 22 1 3.6479 -1.1213 3.3987 23 6 1.7042 -1.8822 3.9314 24 6 2.7001 0.2398 4.7413 25 6 1.6163 0.9487 5.2694 26 7 2.0521 1.6823 6.2612 27 7 3.4309 1.4708 6.3891 28 6 4.3121 2.1028 7.3742 29 6 3.8041 0.5817 5.4452 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.6054 -1.7198 -1.2951 34 1 1.7517 -0.1584 -2.1369 35 1 3.7996 -1.2884 -0.3432 36 1 3.6096 -2.5190 -2.4308 37 1 3.7559 -0.9572 -3.2719 38 1 5.7758 -2.5708 -4.0331 39 1 8.2106 -3.8261 -5.9399 40 1 2.2490 -1.6317 1.1527 41 1 1.6675 -2.5826 3.0971 42 1 2.0673 -2.3965 4.8213 43 1 0.7051 -1.4896 4.1205 44 1 0.5954 0.8967 4.9210 45 1 4.7101 3.0307 6.9632 46 1 3.7470 2.3199 8.2807 47 1 5.1347 1.4283 7.6116 48 1 4.8045 0.2093 5.2811 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321770808.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:06 Heat of formation + Delta-G solvation = 3.308182 kcal Electronic energy + Delta-G solvation = -28677.613371 eV Core-core repulsion = 24576.284363 eV Total energy + Delta-G solvation = -4101.329008 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.42848 -39.79278 -38.31604 -36.73219 -34.57080 -34.24758 -33.62891 -32.79843 -31.24913 -30.85606 -29.45557 -27.59423 -26.69875 -25.09250 -24.55581 -23.26115 -21.85723 -21.21988 -20.56640 -19.85120 -19.23747 -17.92339 -17.38187 -16.80382 -16.27152 -15.94507 -15.53411 -15.41542 -15.15348 -14.59365 -14.53947 -14.46490 -14.18643 -13.94445 -13.72534 -13.55554 -13.10433 -13.06590 -13.02810 -12.80989 -12.66533 -12.56086 -12.25093 -11.93454 -11.89935 -11.75269 -11.62805 -11.61066 -11.45851 -11.05622 -10.94458 -10.62487 -10.45814 -10.23069 -9.70565 -9.51736 -9.46329 -9.07073 -8.50443 -8.47811 -8.08934 -7.97735 -6.43304 -3.84202 1.77376 2.39343 2.63991 2.75360 3.18647 3.24515 3.27729 3.29031 3.88863 4.05355 4.27734 4.30503 4.60138 4.68753 4.81200 4.88202 4.90113 4.97884 5.02387 5.11415 5.14354 5.19920 5.22097 5.25289 5.29205 5.45419 5.48880 5.53382 5.59479 5.65556 5.72847 5.76591 5.84576 5.94531 6.00247 6.04490 6.12057 6.24907 6.51742 6.53923 6.85842 7.15500 7.51400 7.53348 7.59828 7.61043 8.04326 8.30806 8.59579 9.16118 9.52472 10.03979 10.74319 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.012106 B = 0.002248 C = 0.001969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2312.428361 B =12453.914768 C =14220.056791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.145 3.855 3 H 0.096 0.904 4 C 0.051 3.949 5 N -0.667 5.667 6 C 0.050 3.950 7 C 0.440 3.560 8 O -0.583 6.583 9 N -0.563 5.563 10 C -0.300 4.300 11 H 0.102 0.898 12 C 0.022 3.978 13 N -0.902 5.902 14 Si 0.931 3.069 15 H -0.274 1.274 16 H -0.284 1.284 17 H -0.273 1.273 18 N -0.724 5.724 19 C 0.523 3.477 20 O -0.531 6.531 21 C -0.032 4.032 22 H 0.103 0.897 23 C -0.137 4.137 24 C -0.216 4.216 25 C 0.081 3.919 26 N -0.305 5.305 27 N -0.380 5.380 28 C 0.103 3.897 29 C 0.063 3.937 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.032 0.968 34 H 0.086 0.914 35 H 0.348 0.652 36 H 0.043 0.957 37 H 0.087 0.913 38 H 0.392 0.608 39 H 0.272 0.728 40 H 0.396 0.604 41 H 0.061 0.939 42 H 0.067 0.933 43 H 0.060 0.940 44 H 0.177 0.823 45 H 0.073 0.927 46 H 0.087 0.913 47 H 0.086 0.914 48 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.012 1.871 17.622 22.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.040 3.960 3 H 0.114 0.886 4 C -0.079 4.079 5 N -0.300 5.300 6 C -0.083 4.083 7 C 0.225 3.775 8 O -0.467 6.467 9 N -0.200 5.200 10 C -0.429 4.429 11 H 0.120 0.880 12 C -0.179 4.179 13 N -0.543 5.543 14 Si 0.758 3.242 15 H -0.199 1.199 16 H -0.210 1.210 17 H -0.199 1.199 18 N -0.376 5.376 19 C 0.309 3.691 20 O -0.406 6.406 21 C -0.055 4.055 22 H 0.121 0.879 23 C -0.195 4.195 24 C -0.228 4.228 25 C -0.106 4.106 26 N -0.126 5.126 27 N -0.161 5.161 28 C -0.038 4.038 29 C -0.084 4.084 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.050 0.950 34 H 0.104 0.896 35 H 0.167 0.833 36 H 0.061 0.939 37 H 0.105 0.895 38 H 0.225 0.775 39 H 0.082 0.918 40 H 0.230 0.770 41 H 0.080 0.920 42 H 0.086 0.914 43 H 0.079 0.921 44 H 0.194 0.806 45 H 0.092 0.908 46 H 0.105 0.895 47 H 0.105 0.895 48 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -13.841 4.504 18.905 23.860 hybrid contribution 0.866 -2.264 -1.188 2.699 sum -12.975 2.240 17.717 22.074 Atomic orbital electron populations 1.22140 0.95175 1.01949 1.02652 1.20999 0.93300 0.98476 0.83222 0.88567 1.22301 0.88771 0.98935 0.97934 1.60002 1.07557 1.57522 1.04907 1.21691 0.95110 0.96945 0.94518 1.19808 0.88089 0.84264 0.85322 1.90526 1.71129 1.51513 1.33528 1.41860 1.07402 1.50852 1.19884 1.19649 0.81537 1.35189 1.06570 0.87994 1.25261 1.00684 0.96780 0.95197 1.69597 1.36808 1.38536 1.09367 0.85920 0.82144 0.78618 0.77551 1.19925 1.20971 1.19875 1.46019 1.67992 1.13806 1.09813 1.20518 0.77190 0.87248 0.84189 1.90699 1.49236 1.15792 1.84869 1.19531 1.01588 0.94342 0.90023 0.87856 1.21747 0.99157 0.96392 1.02179 1.19410 0.93061 1.07387 1.02962 1.23552 0.99852 0.94073 0.93076 1.77337 0.89176 1.24221 1.21831 1.48364 1.06599 1.34296 1.26882 1.21827 0.92440 0.98429 0.91123 1.22300 0.99886 0.94210 0.91969 0.91567 0.92612 0.91919 0.95040 0.89598 0.83257 0.93869 0.89501 0.77458 0.91808 0.77005 0.92016 0.91428 0.92112 0.80641 0.90799 0.89462 0.89533 0.80906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.47 9.48 37.16 0.35 -1.12 16 2 C 0.14 1.62 2.88 -67.93 -0.20 1.42 16 3 H 0.10 1.36 7.58 -51.93 -0.39 0.97 16 4 C 0.05 0.57 5.30 -3.83 -0.02 0.55 16 5 N -0.67 -10.34 6.12 -115.06 -0.70 -11.04 16 6 C 0.05 0.85 6.17 -4.97 -0.03 0.82 16 7 C 0.44 10.21 7.82 -10.98 -0.09 10.13 16 8 O -0.58 -15.65 15.78 5.55 0.09 -15.56 16 9 N -0.56 -14.08 5.29 -10.96 -0.06 -14.14 16 10 C -0.30 -8.29 9.68 -14.93 -0.14 -8.43 16 11 H 0.10 2.95 7.16 -52.49 -0.38 2.58 16 12 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 13 N -0.90 -24.28 13.05 55.50 0.72 -23.56 16 14 Si 0.93 20.87 29.55 -169.99 -5.02 15.85 16 15 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 16 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 17 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 18 N -0.72 -7.57 4.25 -53.80 -0.23 -7.80 16 19 C 0.52 6.39 7.07 -10.99 -0.08 6.31 16 20 O -0.53 -8.57 15.02 5.55 0.08 -8.48 16 21 C -0.03 -0.31 3.09 -92.92 -0.29 -0.60 16 22 H 0.10 0.90 8.11 -51.93 -0.42 0.47 16 23 C -0.14 -0.98 8.98 37.16 0.33 -0.64 16 24 C -0.22 -2.44 4.37 -105.05 -0.46 -2.90 16 25 C 0.08 1.00 10.76 -17.37 -0.19 0.81 16 26 N -0.30 -4.03 12.57 30.62 0.39 -3.64 16 27 N -0.38 -4.11 4.01 -68.15 -0.27 -4.38 16 28 C 0.10 0.66 11.47 59.85 0.69 1.35 16 29 C 0.06 0.65 11.38 -17.22 -0.20 0.45 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.35 5.45 7.28 -39.29 -0.29 5.17 16 36 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 38 H 0.39 9.35 7.90 -40.82 -0.32 9.02 16 39 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 40 H 0.40 3.34 7.57 -40.82 -0.31 3.04 16 41 H 0.06 0.36 7.56 -51.93 -0.39 -0.04 16 42 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.06 0.45 8.03 -51.93 -0.42 0.03 16 44 H 0.18 1.93 8.06 -52.49 -0.42 1.51 16 45 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 46 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.17 1.27 8.06 -52.49 -0.42 0.84 16 LS Contribution 406.09 15.07 6.12 6.12 Total: -1.00 -36.22 406.09 -6.84 -43.07 By element: Atomic # 1 Polarization: 22.47 SS G_CDS: -7.55 Total: 14.92 kcal Atomic # 6 Polarization: 9.05 SS G_CDS: -0.41 Total: 8.65 kcal Atomic # 7 Polarization: -64.41 SS G_CDS: -0.15 Total: -64.56 kcal Atomic # 8 Polarization: -24.21 SS G_CDS: 0.17 Total: -24.04 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -36.22 -6.84 -43.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321770808.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.375 kcal (2) G-P(sol) polarization free energy of solvation -36.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds