Wall clock time and date at job start Tue Mar 31 2020 20:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99728 * 2 1 3 5 5 N 1.46895 * 109.46918 * 185.00194 * 4 2 1 6 6 C 1.46908 * 110.99864 * 180.02562 * 5 4 2 7 7 C 1.50696 * 109.46912 * 179.97438 * 6 5 4 8 8 O 1.21293 * 120.00517 * 0.02562 * 7 6 5 9 9 N 1.34785 * 119.99759 * 179.97438 * 7 6 5 10 10 C 1.37098 * 119.99820 * 180.02562 * 9 7 6 11 11 H 1.07997 * 120.00078 * 359.97438 * 10 9 7 12 12 C 1.38951 * 119.99541 * 180.02562 * 10 9 7 13 13 N 1.31405 * 120.00561 * 359.97438 * 12 10 9 14 14 Si 1.86809 * 119.99409 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47337 * 59.99682 * 14 12 10 16 16 H 1.48502 * 109.46668 * 179.97438 * 14 12 10 17 17 H 1.48494 * 109.47030 * 299.99457 * 14 12 10 18 18 N 1.46500 * 109.46998 * 119.99942 * 2 1 3 19 19 C 1.34773 * 119.99910 * 275.00232 * 18 2 1 20 20 O 1.21288 * 120.00271 * 359.97438 * 19 18 2 21 21 C 1.50699 * 119.99928 * 179.97438 * 19 18 2 22 22 H 1.08995 * 109.47183 * 60.00106 * 21 19 18 23 23 C 1.52999 * 109.47204 * 299.99575 * 21 19 18 24 24 C 1.50710 * 109.47340 * 179.97438 * 21 19 18 25 25 C 1.39863 * 126.03896 * 59.68608 * 24 21 19 26 26 N 1.30834 * 108.20007 * 179.81875 * 25 24 21 27 27 N 1.40077 * 108.20619 * 0.44537 * 26 25 24 28 28 C 1.46505 * 126.03986 * 179.73840 * 27 26 25 29 29 C 1.34943 * 107.92981 * 359.71503 * 27 26 25 30 30 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 31 31 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 33 33 H 1.08998 * 109.47192 * 305.00392 * 4 2 1 34 34 H 1.08998 * 109.46934 * 65.00238 * 4 2 1 35 35 H 1.00902 * 111.00298 * 56.04947 * 5 4 2 36 36 H 1.08999 * 109.47023 * 300.00086 * 6 5 4 37 37 H 1.08996 * 109.47022 * 59.99922 * 6 5 4 38 38 H 0.96996 * 119.99928 * 0.02562 * 9 7 6 39 39 H 0.96996 * 120.00444 * 180.02562 * 13 12 10 40 40 H 0.96995 * 120.00293 * 94.99410 * 18 2 1 41 41 H 1.08999 * 109.46749 * 60.00120 * 23 21 19 42 42 H 1.09001 * 109.47211 * 179.97438 * 23 21 19 43 43 H 1.08999 * 109.47113 * 300.00023 * 23 21 19 44 44 H 1.08001 * 125.89837 * 0.02562 * 25 24 21 45 45 H 1.09008 * 109.46952 * 269.97728 * 28 27 26 46 46 H 1.09006 * 109.46793 * 29.96794 * 28 27 26 47 47 H 1.08993 * 109.47757 * 149.97513 * 28 27 26 48 48 H 1.08001 * 126.13718 * 180.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 3.5040 -0.8267 -1.1903 6 6 4.0304 -1.5150 -2.3766 7 6 5.5318 -1.6035 -2.2811 8 8 6.1067 -1.1393 -1.3192 9 7 6.2356 -2.1993 -3.2641 10 6 7.6014 -2.2803 -3.1770 11 1 8.1134 -1.8663 -2.3209 12 6 8.3270 -2.8940 -4.1907 13 7 7.7041 -3.3973 -5.2325 14 14 10.1881 -3.0037 -4.0722 15 1 10.5626 -3.7632 -2.8524 16 1 10.7201 -3.7000 -5.2712 17 1 10.7608 -1.6357 -3.9989 18 7 2.0184 -0.6906 1.1962 19 6 2.1470 -0.0182 2.3571 20 8 1.8590 1.1587 2.4115 21 6 2.6488 -0.7288 3.5877 22 1 3.6479 -1.1213 3.3987 23 6 1.7042 -1.8822 3.9314 24 6 2.7001 0.2398 4.7413 25 6 1.6163 0.9487 5.2694 26 7 2.0521 1.6823 6.2612 27 7 3.4309 1.4708 6.3891 28 6 4.3121 2.1028 7.3742 29 6 3.8041 0.5817 5.4452 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.6054 -1.7198 -1.2951 34 1 1.7517 -0.1584 -2.1369 35 1 3.7996 -1.2884 -0.3432 36 1 3.6096 -2.5190 -2.4308 37 1 3.7559 -0.9572 -3.2719 38 1 5.7758 -2.5708 -4.0331 39 1 8.2106 -3.8261 -5.9399 40 1 2.2490 -1.6317 1.1527 41 1 1.6675 -2.5826 3.0971 42 1 2.0673 -2.3965 4.8213 43 1 0.7051 -1.4896 4.1205 44 1 0.5954 0.8967 4.9210 45 1 4.7101 3.0307 6.9632 46 1 3.7470 2.3199 8.2807 47 1 5.1347 1.4283 7.6116 48 1 4.8045 0.2093 5.2811 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321770808.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:05 Heat of formation + Delta-G solvation = -25.026898 kcal Electronic energy + Delta-G solvation = -28678.842072 eV Core-core repulsion = 24576.284363 eV Total energy + Delta-G solvation = -4102.557709 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.24514 -40.74827 -40.08331 -37.84188 -36.00271 -35.37002 -35.00229 -33.57087 -33.22872 -31.77628 -30.19696 -28.94255 -27.34455 -26.68495 -25.40058 -24.56295 -22.74701 -22.01377 -21.47663 -21.08395 -20.63672 -19.88283 -18.34923 -17.68506 -17.67471 -16.90724 -16.86586 -16.34706 -16.26635 -16.14951 -15.89238 -15.41456 -15.31918 -15.11098 -14.94782 -14.65922 -14.28819 -14.01066 -13.85345 -13.62264 -13.52909 -13.42312 -13.30571 -13.10311 -13.01898 -12.99917 -12.76762 -12.61964 -12.47163 -12.43035 -12.40849 -12.11761 -11.88759 -11.48502 -11.45160 -10.66164 -10.33864 -10.30996 -9.99746 -9.97823 -9.30733 -9.28133 -8.45004 -5.93479 0.96618 1.40800 1.42948 1.53494 1.70957 1.76776 1.83134 2.07748 2.30081 2.43246 2.93147 3.22586 3.54011 3.61992 3.81420 3.94845 4.02780 4.23175 4.24720 4.29921 4.31963 4.40511 4.42403 4.43004 4.51931 4.53437 4.62927 4.68143 4.72151 4.79377 4.84653 4.85591 4.88063 5.04404 5.14032 5.22278 5.32124 5.38100 5.42355 5.63962 5.69782 5.89837 6.11666 6.16092 6.43316 6.62281 6.67127 6.75108 7.14534 7.41382 7.58713 8.14150 8.72017 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.012106 B = 0.002248 C = 0.001969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2312.428361 B =12453.914768 C =14220.056791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.147 3.853 3 H 0.060 0.940 4 C 0.057 3.943 5 N -0.687 5.687 6 C 0.065 3.935 7 C 0.436 3.564 8 O -0.624 6.624 9 N -0.573 5.573 10 C -0.333 4.333 11 H 0.078 0.922 12 C -0.013 4.013 13 N -0.920 5.920 14 Si 0.991 3.009 15 H -0.270 1.270 16 H -0.271 1.271 17 H -0.274 1.274 18 N -0.714 5.714 19 C 0.519 3.481 20 O -0.577 6.577 21 C -0.026 4.026 22 H 0.116 0.884 23 C -0.131 4.131 24 C -0.233 4.233 25 C 0.067 3.933 26 N -0.341 5.341 27 N -0.383 5.383 28 C 0.094 3.906 29 C 0.060 3.940 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.045 0.955 33 H 0.061 0.939 34 H 0.095 0.905 35 H 0.345 0.655 36 H 0.074 0.926 37 H 0.103 0.897 38 H 0.397 0.603 39 H 0.277 0.723 40 H 0.408 0.592 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.055 0.945 44 H 0.177 0.823 45 H 0.078 0.922 46 H 0.091 0.909 47 H 0.116 0.884 48 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.004 0.277 17.288 22.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.042 3.958 3 H 0.079 0.921 4 C -0.072 4.072 5 N -0.321 5.321 6 C -0.067 4.067 7 C 0.224 3.776 8 O -0.510 6.510 9 N -0.210 5.210 10 C -0.463 4.463 11 H 0.096 0.904 12 C -0.213 4.213 13 N -0.560 5.560 14 Si 0.815 3.185 15 H -0.195 1.195 16 H -0.196 1.196 17 H -0.200 1.200 18 N -0.367 5.367 19 C 0.306 3.694 20 O -0.456 6.456 21 C -0.049 4.049 22 H 0.134 0.866 23 C -0.188 4.188 24 C -0.245 4.245 25 C -0.119 4.119 26 N -0.163 5.163 27 N -0.165 5.165 28 C -0.046 4.046 29 C -0.087 4.087 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.064 0.936 33 H 0.079 0.921 34 H 0.113 0.887 35 H 0.164 0.836 36 H 0.092 0.908 37 H 0.121 0.879 38 H 0.231 0.769 39 H 0.087 0.913 40 H 0.245 0.755 41 H 0.097 0.903 42 H 0.095 0.905 43 H 0.074 0.926 44 H 0.194 0.806 45 H 0.096 0.904 46 H 0.110 0.890 47 H 0.135 0.865 48 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -13.865 2.878 18.553 23.340 hybrid contribution 0.853 -1.712 -1.054 2.184 sum -13.012 1.166 17.499 21.838 Atomic orbital electron populations 1.22045 0.93315 1.03148 1.02428 1.20912 0.94612 0.96700 0.83553 0.92142 1.22342 0.86184 1.00562 0.98106 1.59968 1.10271 1.57653 1.04198 1.21546 0.90172 0.99181 0.95807 1.20940 0.90741 0.82109 0.83821 1.90495 1.72858 1.52718 1.34947 1.41930 1.06822 1.51633 1.20657 1.19611 0.83145 1.36854 1.06691 0.90388 1.26014 1.04785 0.95899 0.94555 1.69655 1.38302 1.38458 1.09630 0.85018 0.76979 0.78519 0.78011 1.19517 1.19554 1.19962 1.45956 1.67210 1.14305 1.09203 1.21026 0.76405 0.86792 0.85173 1.90679 1.51408 1.17874 1.85627 1.19565 1.02645 0.94445 0.88216 0.86637 1.21726 0.98205 0.95634 1.03255 1.19690 0.93058 1.08050 1.03717 1.23691 1.00445 0.94451 0.93269 1.77244 0.90971 1.25340 1.22778 1.48729 1.06123 1.34183 1.27452 1.22164 0.92707 0.99265 0.90466 1.22836 1.00899 0.93584 0.91377 0.90405 0.90594 0.93588 0.92123 0.88715 0.83595 0.90836 0.87859 0.76926 0.91318 0.75537 0.90268 0.90529 0.92631 0.80629 0.90380 0.88990 0.86530 0.78006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 9.48 71.98 0.68 -1.83 16 2 C 0.15 3.13 2.88 44.99 0.13 3.26 16 3 H 0.06 1.75 7.58 -2.39 -0.02 1.73 16 4 C 0.06 1.14 5.30 86.30 0.46 1.60 16 5 N -0.69 -20.08 6.12 -517.95 -3.17 -23.24 16 6 C 0.07 2.07 6.17 85.55 0.53 2.59 16 7 C 0.44 20.09 7.82 87.65 0.69 20.78 16 8 O -0.62 -33.84 15.78 -3.07 -0.05 -33.89 16 9 N -0.57 -28.66 5.29 -306.98 -1.62 -30.28 16 10 C -0.33 -18.63 9.68 84.04 0.81 -17.82 16 11 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 12 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 13 N -0.92 -48.81 13.05 21.66 0.28 -48.52 16 14 Si 0.99 42.29 29.55 68.60 2.03 44.32 16 15 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 16 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 17 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 18 N -0.71 -14.14 4.25 -442.52 -1.88 -16.02 16 19 C 0.52 12.63 7.07 87.66 0.62 13.25 16 20 O -0.58 -19.33 15.02 -3.05 -0.05 -19.38 16 21 C -0.03 -0.48 3.09 -12.28 -0.04 -0.52 16 22 H 0.12 1.83 8.11 -2.39 -0.02 1.81 16 23 C -0.13 -1.66 8.98 71.98 0.65 -1.02 16 24 C -0.23 -5.24 4.37 -20.14 -0.09 -5.33 16 25 C 0.07 1.72 10.76 85.23 0.92 2.64 16 26 N -0.34 -9.30 12.57 -57.03 -0.72 -10.02 16 27 N -0.38 -8.16 4.01 -369.54 -1.48 -9.64 16 28 C 0.09 1.10 11.47 127.77 1.47 2.57 16 29 C 0.06 1.19 11.38 83.54 0.95 2.14 16 30 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.34 10.30 7.28 -89.69 -0.65 9.65 16 36 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.10 2.98 8.14 -2.39 -0.02 2.96 16 38 H 0.40 18.74 7.90 -92.71 -0.73 18.01 16 39 H 0.28 13.83 8.31 -92.71 -0.77 13.06 16 40 H 0.41 6.02 7.57 -92.71 -0.70 5.32 16 41 H 0.08 0.72 7.56 -2.39 -0.02 0.70 16 42 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.05 0.77 8.03 -2.39 -0.02 0.75 16 44 H 0.18 4.18 8.06 -2.91 -0.02 4.15 16 45 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 46 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 47 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 48 H 0.20 2.57 8.06 -2.91 -0.02 2.55 16 Total: -1.00 -80.72 406.09 0.49 -80.23 By element: Atomic # 1 Polarization: 45.44 SS G_CDS: -1.09 Total: 44.34 kcal Atomic # 6 Polarization: 13.86 SS G_CDS: 8.24 Total: 22.10 kcal Atomic # 7 Polarization: -129.14 SS G_CDS: -8.59 Total: -137.73 kcal Atomic # 8 Polarization: -53.17 SS G_CDS: -0.09 Total: -53.27 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Total: -80.72 0.49 -80.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321770808.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.200 kcal (2) G-P(sol) polarization free energy of solvation -80.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds